| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is ylqH [H]
Identifier: 74317614
GI number: 74317614
Start: 1682278
End: 1682652
Strand: Direct
Name: ylqH [H]
Synonym: Tbd_1596
Alternate gene names: 74317614
Gene position: 1682278-1682652 (Clockwise)
Preceding gene: 74317613
Following gene: 74317615
Centisome position: 57.81
GC content: 67.47
Gene sequence:
>375_bases ATGCCGACGCCTGACACGCAGCCGGCCGCGAGCGGGGATGTCGGCGCGTTATCCGAAGGGGCATCCCTTGGGACAGCGGC TCTACAGTCCCGGCCTACTCCCCGCGCGTGCGCCGCCCTCGCCTACCGCGGCGGGGACGCGGCGCCGCGCGTCGTCGCCA AGGGCCGCGGCATCCTGGCTGACAGCATCATCGAAAAAGCCCGCGCGTCGGGCGTGTACGTCCACGAGTCTCGCGAACTG CTGGCGCTTTTGATGCAGATCGACCTCGACAGCCACATCCCGCCGCAACTGTACATCGCCGTCGCGGAATTGCTGGCGTG GCTCTATCATCTGGAAGAAACCGGCGACCGACGCCTATCGCATCCTCCCACTTGA
Upstream 100 bases:
>100_bases CGGCCCGCGGTCGAAACGCTGCTTCAGGATAACCAGGCGCGCCTGCTTTCCCAGATGTCCGCGGCCGGCTGTGCGCTTCA AGCTTTTGTGGTGCAACACG
Downstream 100 bases:
>100_bases GCACAATGTCTTCTTCCCCCCCGCAACACGATCTCGGCCACTGCGACGGCGACGACTTCCTCGCGCGTTATACCCTGCAT TCACGCGCCGAAATCCTTTT
Product: flagellar protein FhlB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 124; Mature: 123
Protein sequence:
>124_residues MPTPDTQPAASGDVGALSEGASLGTAALQSRPTPRACAALAYRGGDAAPRVVAKGRGILADSIIEKARASGVYVHESREL LALLMQIDLDSHIPPQLYIAVAELLAWLYHLEETGDRRLSHPPT
Sequences:
>Translated_124_residues MPTPDTQPAASGDVGALSEGASLGTAALQSRPTPRACAALAYRGGDAAPRVVAKGRGILADSIIEKARASGVYVHESREL LALLMQIDLDSHIPPQLYIAVAELLAWLYHLEETGDRRLSHPPT >Mature_123_residues PTPDTQPAASGDVGALSEGASLGTAALQSRPTPRACAALAYRGGDAAPRVVAKGRGILADSIIEKARASGVYVHESRELL ALLMQIDLDSHIPPQLYIAVAELLAWLYHLEETGDRRLSHPPT
Specific function: Required For Formation Of The Rod Structure In The Basal Body Of The Flagellar Apparatus. Together With Flii And Flih, May Constitute The Export Apparatus Of Flagellin. [C]
COG id: COG2257
COG function: function code S; Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane. [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004683 - InterPro: IPR006135 [H]
Pfam domain/function: PF01312 Bac_export_2 [H]
EC number: NA
Molecular weight: Translated: 13093; Mature: 12962
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTPDTQPAASGDVGALSEGASLGTAALQSRPTPRACAALAYRGGDAAPRVVAKGRGILA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHCCCCCHH DSIIEKARASGVYVHESRELLALLMQIDLDSHIPPQLYIAVAELLAWLYHLEETGDRRLS HHHHHHHHHCCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC HPPT CCCC >Mature Secondary Structure PTPDTQPAASGDVGALSEGASLGTAALQSRPTPRACAALAYRGGDAAPRVVAKGRGILA CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHCCCCCHH DSIIEKARASGVYVHESRELLALLMQIDLDSHIPPQLYIAVAELLAWLYHLEETGDRRLS HHHHHHHHHCCEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC HPPT CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]