| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is murI [H]
Identifier: 74317540
GI number: 74317540
Start: 1610025
End: 1610822
Strand: Direct
Name: murI [H]
Synonym: Tbd_1522
Alternate gene names: 74317540
Gene position: 1610025-1610822 (Clockwise)
Preceding gene: 74317538
Following gene: 74317541
Centisome position: 55.33
GC content: 64.79
Gene sequence:
>798_bases ATGTCCACGAATGCACACTCCCCCATCGGCGTATTCGACTCCGGCATCGGCGGGCTGACGGTCGTGCGCGCGCTCATGGA GCGGCTTCCCTACGAGAACATCGTCTATTTCGGCGACACCGCGCGCGTGCCCTACGGCGTGAAATCGGTCGAGACGATCG CCCACTTCACGACGCAGATCGCGCAGTTCCTGCTGGAAAAGGACGTCAAGCTGCTCGTCATCGCGTGTAACACGATGGCT GCCGTCGCCGCGCAGGTCGTCAAGGACCTGTCGCCGGTGCCCGTCCTCGACGTGATCGACGCCGGCGCGGCCTCGGCACG CGGTGGAAAAAAGATCGGCGTCATCGGCACGCCGACGACGATCAACAGCAACGCTTACGCGCGCGCCATCCACGACTACG CGCCCGACTCGCGCATCCATTCACAGGCCTGCCCGCTGTTCGTTCCGCTGGTCGAGGAAGGCTGGCTCGACAACGAGGTG ACGCGCCTGACCGCGCAGGATTACATGAAGCCGCTCCTGGCCGAGCACATCGACACGCTCGTGCTCGGCTGCACCCATTA CCCGCTGCTCAAACCCTTGCTGCGCGAAGTGGTGGGCGACGGTGTCGCGCTCGTCGATTCCGCGGAAGCGATGGCCGAGC AGGTCGCGGCTGTTCTCGCCGAGAAAAGTCTCGCCAATCCCGGGCCGGCGCAACCGCGCTACGACTTCTACGTCACCGAC GTGCCGCTGCGCTTCCAGACGATAGGCGAACGCTTTCTCGGGCGCACGCTCAACAACGTGCACCTCGTGAAGTGGTGA
Upstream 100 bases:
>100_bases GAATCGCAGCCGCACCCGCTCATGTGCGCCGTACCCCGCGCCGCCGGGCAGGCCGCGGCGAGTAGAATGCCGTCTTTCTC ATCGCGCCATCCTGCCACTC
Downstream 100 bases:
>100_bases ACGCCACGCGCTGAGATGATCCGGGTCAACGCCGAGATCGAACTCGACGAGCGCGAAATCCAGGAGGATTTCGTGCGCGC CTCCGGCCCGGGCGGACAAA
Product: glutamate racemase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MSTNAHSPIGVFDSGIGGLTVVRALMERLPYENIVYFGDTARVPYGVKSVETIAHFTTQIAQFLLEKDVKLLVIACNTMA AVAAQVVKDLSPVPVLDVIDAGAASARGGKKIGVIGTPTTINSNAYARAIHDYAPDSRIHSQACPLFVPLVEEGWLDNEV TRLTAQDYMKPLLAEHIDTLVLGCTHYPLLKPLLREVVGDGVALVDSAEAMAEQVAAVLAEKSLANPGPAQPRYDFYVTD VPLRFQTIGERFLGRTLNNVHLVKW
Sequences:
>Translated_265_residues MSTNAHSPIGVFDSGIGGLTVVRALMERLPYENIVYFGDTARVPYGVKSVETIAHFTTQIAQFLLEKDVKLLVIACNTMA AVAAQVVKDLSPVPVLDVIDAGAASARGGKKIGVIGTPTTINSNAYARAIHDYAPDSRIHSQACPLFVPLVEEGWLDNEV TRLTAQDYMKPLLAEHIDTLVLGCTHYPLLKPLLREVVGDGVALVDSAEAMAEQVAAVLAEKSLANPGPAQPRYDFYVTD VPLRFQTIGERFLGRTLNNVHLVKW >Mature_264_residues STNAHSPIGVFDSGIGGLTVVRALMERLPYENIVYFGDTARVPYGVKSVETIAHFTTQIAQFLLEKDVKLLVIACNTMAA VAAQVVKDLSPVPVLDVIDAGAASARGGKKIGVIGTPTTINSNAYARAIHDYAPDSRIHSQACPLFVPLVEEGWLDNEVT RLTAQDYMKPLLAEHIDTLVLGCTHYPLLKPLLREVVGDGVALVDSAEAMAEQVAAVLAEKSLANPGPAQPRYDFYVTDV PLRFQTIGERFLGRTLNNVHLVKW
Specific function: Provides the (R)-glutamate required for cell wall biosynthesis [H]
COG id: COG0796
COG function: function code M; Glutamate racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate/glutamate racemases family [H]
Homologues:
Organism=Escherichia coli, GI87082355, Length=218, Percent_Identity=31.651376146789, Blast_Score=86, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015942 - InterPro: IPR001920 - InterPro: IPR018187 - InterPro: IPR004391 [H]
Pfam domain/function: PF01177 Asp_Glu_race [H]
EC number: =5.1.1.3 [H]
Molecular weight: Translated: 28691; Mature: 28560
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: PS00924 ASP_GLU_RACEMASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTNAHSPIGVFDSGIGGLTVVRALMERLPYENIVYFGDTARVPYGVKSVETIAHFTTQI CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH AQFLLEKDVKLLVIACNTMAAVAAQVVKDLSPVPVLDVIDAGAASARGGKKIGVIGTPTT HHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCE INSNAYARAIHDYAPDSRIHSQACPLFVPLVEEGWLDNEVTRLTAQDYMKPLLAEHIDTL ECCCHHHHHHHHCCCCCHHHHCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH VLGCTHYPLLKPLLREVVGDGVALVDSAEAMAEQVAAVLAEKSLANPGPAQPRYDFYVTD HHHCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC VPLRFQTIGERFLGRTLNNVHLVKW CCHHHHHHHHHHHHHCCCCEEEEEC >Mature Secondary Structure STNAHSPIGVFDSGIGGLTVVRALMERLPYENIVYFGDTARVPYGVKSVETIAHFTTQI CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH AQFLLEKDVKLLVIACNTMAAVAAQVVKDLSPVPVLDVIDAGAASARGGKKIGVIGTPTT HHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCE INSNAYARAIHDYAPDSRIHSQACPLFVPLVEEGWLDNEVTRLTAQDYMKPLLAEHIDTL ECCCHHHHHHHHCCCCCHHHHCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH VLGCTHYPLLKPLLREVVGDGVALVDSAEAMAEQVAAVLAEKSLANPGPAQPRYDFYVTD HHHCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC VPLRFQTIGERFLGRTLNNVHLVKW CCHHHHHHHHHHHHHCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA