Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

Click here to switch to the map view.

The map label for this gene is murI [H]

Identifier: 74317540

GI number: 74317540

Start: 1610025

End: 1610822

Strand: Direct

Name: murI [H]

Synonym: Tbd_1522

Alternate gene names: 74317540

Gene position: 1610025-1610822 (Clockwise)

Preceding gene: 74317538

Following gene: 74317541

Centisome position: 55.33

GC content: 64.79

Gene sequence:

>798_bases
ATGTCCACGAATGCACACTCCCCCATCGGCGTATTCGACTCCGGCATCGGCGGGCTGACGGTCGTGCGCGCGCTCATGGA
GCGGCTTCCCTACGAGAACATCGTCTATTTCGGCGACACCGCGCGCGTGCCCTACGGCGTGAAATCGGTCGAGACGATCG
CCCACTTCACGACGCAGATCGCGCAGTTCCTGCTGGAAAAGGACGTCAAGCTGCTCGTCATCGCGTGTAACACGATGGCT
GCCGTCGCCGCGCAGGTCGTCAAGGACCTGTCGCCGGTGCCCGTCCTCGACGTGATCGACGCCGGCGCGGCCTCGGCACG
CGGTGGAAAAAAGATCGGCGTCATCGGCACGCCGACGACGATCAACAGCAACGCTTACGCGCGCGCCATCCACGACTACG
CGCCCGACTCGCGCATCCATTCACAGGCCTGCCCGCTGTTCGTTCCGCTGGTCGAGGAAGGCTGGCTCGACAACGAGGTG
ACGCGCCTGACCGCGCAGGATTACATGAAGCCGCTCCTGGCCGAGCACATCGACACGCTCGTGCTCGGCTGCACCCATTA
CCCGCTGCTCAAACCCTTGCTGCGCGAAGTGGTGGGCGACGGTGTCGCGCTCGTCGATTCCGCGGAAGCGATGGCCGAGC
AGGTCGCGGCTGTTCTCGCCGAGAAAAGTCTCGCCAATCCCGGGCCGGCGCAACCGCGCTACGACTTCTACGTCACCGAC
GTGCCGCTGCGCTTCCAGACGATAGGCGAACGCTTTCTCGGGCGCACGCTCAACAACGTGCACCTCGTGAAGTGGTGA

Upstream 100 bases:

>100_bases
GAATCGCAGCCGCACCCGCTCATGTGCGCCGTACCCCGCGCCGCCGGGCAGGCCGCGGCGAGTAGAATGCCGTCTTTCTC
ATCGCGCCATCCTGCCACTC

Downstream 100 bases:

>100_bases
ACGCCACGCGCTGAGATGATCCGGGTCAACGCCGAGATCGAACTCGACGAGCGCGAAATCCAGGAGGATTTCGTGCGCGC
CTCCGGCCCGGGCGGACAAA

Product: glutamate racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSTNAHSPIGVFDSGIGGLTVVRALMERLPYENIVYFGDTARVPYGVKSVETIAHFTTQIAQFLLEKDVKLLVIACNTMA
AVAAQVVKDLSPVPVLDVIDAGAASARGGKKIGVIGTPTTINSNAYARAIHDYAPDSRIHSQACPLFVPLVEEGWLDNEV
TRLTAQDYMKPLLAEHIDTLVLGCTHYPLLKPLLREVVGDGVALVDSAEAMAEQVAAVLAEKSLANPGPAQPRYDFYVTD
VPLRFQTIGERFLGRTLNNVHLVKW

Sequences:

>Translated_265_residues
MSTNAHSPIGVFDSGIGGLTVVRALMERLPYENIVYFGDTARVPYGVKSVETIAHFTTQIAQFLLEKDVKLLVIACNTMA
AVAAQVVKDLSPVPVLDVIDAGAASARGGKKIGVIGTPTTINSNAYARAIHDYAPDSRIHSQACPLFVPLVEEGWLDNEV
TRLTAQDYMKPLLAEHIDTLVLGCTHYPLLKPLLREVVGDGVALVDSAEAMAEQVAAVLAEKSLANPGPAQPRYDFYVTD
VPLRFQTIGERFLGRTLNNVHLVKW
>Mature_264_residues
STNAHSPIGVFDSGIGGLTVVRALMERLPYENIVYFGDTARVPYGVKSVETIAHFTTQIAQFLLEKDVKLLVIACNTMAA
VAAQVVKDLSPVPVLDVIDAGAASARGGKKIGVIGTPTTINSNAYARAIHDYAPDSRIHSQACPLFVPLVEEGWLDNEVT
RLTAQDYMKPLLAEHIDTLVLGCTHYPLLKPLLREVVGDGVALVDSAEAMAEQVAAVLAEKSLANPGPAQPRYDFYVTDV
PLRFQTIGERFLGRTLNNVHLVKW

Specific function: Provides the (R)-glutamate required for cell wall biosynthesis [H]

COG id: COG0796

COG function: function code M; Glutamate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI87082355, Length=218, Percent_Identity=31.651376146789, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004391 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: =5.1.1.3 [H]

Molecular weight: Translated: 28691; Mature: 28560

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNAHSPIGVFDSGIGGLTVVRALMERLPYENIVYFGDTARVPYGVKSVETIAHFTTQI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
AQFLLEKDVKLLVIACNTMAAVAAQVVKDLSPVPVLDVIDAGAASARGGKKIGVIGTPTT
HHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCE
INSNAYARAIHDYAPDSRIHSQACPLFVPLVEEGWLDNEVTRLTAQDYMKPLLAEHIDTL
ECCCHHHHHHHHCCCCCHHHHCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VLGCTHYPLLKPLLREVVGDGVALVDSAEAMAEQVAAVLAEKSLANPGPAQPRYDFYVTD
HHHCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
VPLRFQTIGERFLGRTLNNVHLVKW
CCHHHHHHHHHHHHHCCCCEEEEEC
>Mature Secondary Structure 
STNAHSPIGVFDSGIGGLTVVRALMERLPYENIVYFGDTARVPYGVKSVETIAHFTTQI
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
AQFLLEKDVKLLVIACNTMAAVAAQVVKDLSPVPVLDVIDAGAASARGGKKIGVIGTPTT
HHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCE
INSNAYARAIHDYAPDSRIHSQACPLFVPLVEEGWLDNEVTRLTAQDYMKPLLAEHIDTL
ECCCHHHHHHHHCCCCCHHHHCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VLGCTHYPLLKPLLREVVGDGVALVDSAEAMAEQVAAVLAEKSLANPGPAQPRYDFYVTD
HHHCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
VPLRFQTIGERFLGRTLNNVHLVKW
CCHHHHHHHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA