| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317484
Identifier: 74317484
GI number: 74317484
Start: 1550614
End: 1551651
Strand: Reverse
Name: 74317484
Synonym: Tbd_1466
Alternate gene names: NA
Gene position: 1551651-1550614 (Counterclockwise)
Preceding gene: 74317487
Following gene: 74317482
Centisome position: 53.32
GC content: 68.79
Gene sequence:
>1038_bases ATGCTCGTTTCCGCGCACAGGCCGCTGCCATCGTTCGCCGACAAGGTCGGCTTCCTGCGCGACGCCGCGCATTACCCGGC GCCGACGCGGCGGGTCGTCACGGTGGAAACGCATGTTTCCTGGGTCTTTCTGACCGACAGTTTCGCCTACAAGCTGAAGA AGCCGGTGCGTTGCAGCTATCTCGACTTCAGCACCCTCGAGGCACGACGCCGCGACTGCGACGAGGAGGTGCGGCTCAAC CGGCGGCTCGCGGCTTCGGTCTACCTCGGCGTGCTGCCGCTGGTCTGGCACCGCGAGGGCGGGCTCGGCCTCGGCGGCGA GGGAGAGACTGTGGAGTGGCTCGTCAAGATGCGACGGCTGCCCGCTTCCCGCATGCTCGACAGCCTGATACGCGAGCGGG CGGTGAGCGAGGCGCAGATGCGGCAGCTGGCGCGCCTGCTTGCGGCCTTCTATGCCGGCATCGTCCCCGAACCGATGGGC GCAGCGCGCTATCGGGCGCGGCTGGCGCAGCAGATCGCCGAGCCGCTGCACGAACTGGGTGACGTCGACTTCGGCGTGCC CCACGCGCGTGCGGTGGGTGTGGCCGACGCGCAGGCCGAATTCGTGCGCCGCGAAGCCGCGCTGCTCGACGAACGCGTCG CGCGCGGCCGCATCGTCGAGGGCCACGGCGACCTGCGGCCCGAACACGTGTGCCTGCTTGCCGATCCCGTCGTCATCGAT TGCGTCGAGTTCAAGCGCGACTTCCGGATTCTCGACCCGCTCGACGAACTCGGTTATCTCGCGCTCGAATGCGAGCGTCT CGGCATGGCGGAAATCGGCCCGTGGCTGTTGATCGGCTACGCCGAAGCGAGCGGCGATACGTGGCCGGCGCCCTTGCTGC ACTTCTACCAGAGCTGCCGTGCGATGCTGCGCGCCAAGCTCGCGGTCTGGCATCTCAAGGACGATGACGGCCGCCATCCG CCCGCGAGATGGCCGGCCCTCGCGCACGACTATCTCGAACTGGCCGAGCGCCACATCGCCAGGGCGACGCTGCGCTAA
Upstream 100 bases:
>100_bases CAAGCATTCGGCGCAGGCCGTTGAACGCATGGCATTTTTTTCGCGGCGCGGGCGGCGGTTCCGGCGGGACCCGCGGCCGC CCGGGGCCGGCTACTAGATC
Downstream 100 bases:
>100_bases TCGCCGAGCAGATCGCCGAGCGAGCGTGCTTCGTGCAGCCGCCGGATCGCCTCGGCGAAGAGCGGCGCGATGTCGAGGAT TTCGACGCGCTCGCCCAGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MLVSAHRPLPSFADKVGFLRDAAHYPAPTRRVVTVETHVSWVFLTDSFAYKLKKPVRCSYLDFSTLEARRRDCDEEVRLN RRLAASVYLGVLPLVWHREGGLGLGGEGETVEWLVKMRRLPASRMLDSLIRERAVSEAQMRQLARLLAAFYAGIVPEPMG AARYRARLAQQIAEPLHELGDVDFGVPHARAVGVADAQAEFVRREAALLDERVARGRIVEGHGDLRPEHVCLLADPVVID CVEFKRDFRILDPLDELGYLALECERLGMAEIGPWLLIGYAEASGDTWPAPLLHFYQSCRAMLRAKLAVWHLKDDDGRHP PARWPALAHDYLELAERHIARATLR
Sequences:
>Translated_345_residues MLVSAHRPLPSFADKVGFLRDAAHYPAPTRRVVTVETHVSWVFLTDSFAYKLKKPVRCSYLDFSTLEARRRDCDEEVRLN RRLAASVYLGVLPLVWHREGGLGLGGEGETVEWLVKMRRLPASRMLDSLIRERAVSEAQMRQLARLLAAFYAGIVPEPMG AARYRARLAQQIAEPLHELGDVDFGVPHARAVGVADAQAEFVRREAALLDERVARGRIVEGHGDLRPEHVCLLADPVVID CVEFKRDFRILDPLDELGYLALECERLGMAEIGPWLLIGYAEASGDTWPAPLLHFYQSCRAMLRAKLAVWHLKDDDGRHP PARWPALAHDYLELAERHIARATLR >Mature_345_residues MLVSAHRPLPSFADKVGFLRDAAHYPAPTRRVVTVETHVSWVFLTDSFAYKLKKPVRCSYLDFSTLEARRRDCDEEVRLN RRLAASVYLGVLPLVWHREGGLGLGGEGETVEWLVKMRRLPASRMLDSLIRERAVSEAQMRQLARLLAAFYAGIVPEPMG AARYRARLAQQIAEPLHELGDVDFGVPHARAVGVADAQAEFVRREAALLDERVARGRIVEGHGDLRPEHVCLLADPVVID CVEFKRDFRILDPLDELGYLALECERLGMAEIGPWLLIGYAEASGDTWPAPLLHFYQSCRAMLRAKLAVWHLKDDDGRHP PARWPALAHDYLELAERHIARATLR
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 38959; Mature: 38959
Theoretical pI: Translated: 7.39; Mature: 7.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVSAHRPLPSFADKVGFLRDAAHYPAPTRRVVTVETHVSWVFLTDSFAYKLKKPVRCSY CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECHHHHHHCCCCEEEC LDFSTLEARRRDCDEEVRLNRRLAASVYLGVLPLVWHREGGLGLGGEGETVEWLVKMRRL CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHC PASRMLDSLIRERAVSEAQMRQLARLLAAFYAGIVPEPMGAARYRARLAQQIAEPLHELG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC DVDFGVPHARAVGVADAQAEFVRREAALLDERVARGRIVEGHGDLRPEHVCLLADPVVID CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECCHHHH CVEFKRDFRILDPLDELGYLALECERLGMAEIGPWLLIGYAEASGDTWPAPLLHFYQSCR HHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH AMLRAKLAVWHLKDDDGRHPPARWPALAHDYLELAERHIARATLR HHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLVSAHRPLPSFADKVGFLRDAAHYPAPTRRVVTVETHVSWVFLTDSFAYKLKKPVRCSY CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECHHHHHHCCCCEEEC LDFSTLEARRRDCDEEVRLNRRLAASVYLGVLPLVWHREGGLGLGGEGETVEWLVKMRRL CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHC PASRMLDSLIRERAVSEAQMRQLARLLAAFYAGIVPEPMGAARYRARLAQQIAEPLHELG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC DVDFGVPHARAVGVADAQAEFVRREAALLDERVARGRIVEGHGDLRPEHVCLLADPVVID CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECCHHHH CVEFKRDFRILDPLDELGYLALECERLGMAEIGPWLLIGYAEASGDTWPAPLLHFYQSCR HHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH AMLRAKLAVWHLKDDDGRHPPARWPALAHDYLELAERHIARATLR HHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]