| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317405
Identifier: 74317405
GI number: 74317405
Start: 1466682
End: 1467269
Strand: Reverse
Name: 74317405
Synonym: Tbd_1387
Alternate gene names: NA
Gene position: 1467269-1466682 (Counterclockwise)
Preceding gene: 74317406
Following gene: 74317398
Centisome position: 50.42
GC content: 66.33
Gene sequence:
>588_bases ATGGCGCTTTATCATCCCGATATCCCAAGCACGGCCCAGGTCGCGGGGCACCCGATCCACCCCATGCTCGTTCCGTTCCC GATCGCCTTTCTGGTCACTGCACTGATCACGGACCTGACCTATCTCAATACCGAGGATCCATTCTGGGCGCTGGCTTCGC TGTGGCTGCTGCGCGCGGGCCTCGTGATGGGCATCCTCGCGGCCGTGTTCGGTCTGGTCGACTTCTATTCGCGGCGCACG ATCCGCGACCACAAGATCGCCTGGTACCACTTCATCGGCAACGCGACGGTACTGATCCTTGCATGGGTCAACGTCTCGAT GCGCAACGAGGCGCCAATCGACGGCCTCACCCCCGCCGGGATCACGCTTTCGGCCGTGGTCGCCGGCATTTTGCTCGTCA CGGCCTGGCTTGGCGGCGAGATGGCCTACCGACATCACATCGGCGCGGTTCCCGCCGCGCGCGAATCGGTGACCGTCGAA CGAACGCCGCCGGGGGCGCGGCCGTCGACGATGGCGTCGAGCTACGTCCCGGCCGGGCACGAACGTCGCACCGGACCGGG AGACCGCCGCAACCACGTCGCCGCCTGA
Upstream 100 bases:
>100_bases CCGTGCGGTTGCATGTTCATGCCCGCGTCCTATTCTTCCATCCTGTTCTCCACCGCCGGCATGCGCTGGCGTCCCGGTCA AAGCGTAAAGGAGGTGTGCG
Downstream 100 bases:
>100_bases ACGGCGGGAGTGGGCACGTACGTTTGCATATGTCCGGGCGTTCAGCAGATGCGCGGTAACGGATCGTCTTCCAGTTCGTC GATCACGCGGCGCCCGCCGA
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 195; Mature: 194
Protein sequence:
>195_residues MALYHPDIPSTAQVAGHPIHPMLVPFPIAFLVTALITDLTYLNTEDPFWALASLWLLRAGLVMGILAAVFGLVDFYSRRT IRDHKIAWYHFIGNATVLILAWVNVSMRNEAPIDGLTPAGITLSAVVAGILLVTAWLGGEMAYRHHIGAVPAARESVTVE RTPPGARPSTMASSYVPAGHERRTGPGDRRNHVAA
Sequences:
>Translated_195_residues MALYHPDIPSTAQVAGHPIHPMLVPFPIAFLVTALITDLTYLNTEDPFWALASLWLLRAGLVMGILAAVFGLVDFYSRRT IRDHKIAWYHFIGNATVLILAWVNVSMRNEAPIDGLTPAGITLSAVVAGILLVTAWLGGEMAYRHHIGAVPAARESVTVE RTPPGARPSTMASSYVPAGHERRTGPGDRRNHVAA >Mature_194_residues ALYHPDIPSTAQVAGHPIHPMLVPFPIAFLVTALITDLTYLNTEDPFWALASLWLLRAGLVMGILAAVFGLVDFYSRRTI RDHKIAWYHFIGNATVLILAWVNVSMRNEAPIDGLTPAGITLSAVVAGILLVTAWLGGEMAYRHHIGAVPAARESVTVER TPPGARPSTMASSYVPAGHERRTGPGDRRNHVAA
Specific function: Unknown
COG id: COG4244
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21121; Mature: 20990
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALYHPDIPSTAQVAGHPIHPMLVPFPIAFLVTALITDLTYLNTEDPFWALASLWLLRAG CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LVMGILAAVFGLVDFYSRRTIRDHKIAWYHFIGNATVLILAWVNVSMRNEAPIDGLTPAG HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCC ITLSAVVAGILLVTAWLGGEMAYRHHIGAVPAARESVTVERTPPGARPSTMASSYVPAGH HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCC ERRTGPGDRRNHVAA CCCCCCCCCCCCCCC >Mature Secondary Structure ALYHPDIPSTAQVAGHPIHPMLVPFPIAFLVTALITDLTYLNTEDPFWALASLWLLRAG CCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LVMGILAAVFGLVDFYSRRTIRDHKIAWYHFIGNATVLILAWVNVSMRNEAPIDGLTPAG HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCC ITLSAVVAGILLVTAWLGGEMAYRHHIGAVPAARESVTVERTPPGARPSTMASSYVPAGH HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCC ERRTGPGDRRNHVAA CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA