| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317389
Identifier: 74317389
GI number: 74317389
Start: 1451736
End: 1453541
Strand: Direct
Name: 74317389
Synonym: Tbd_1371
Alternate gene names: NA
Gene position: 1451736-1453541 (Clockwise)
Preceding gene: 74317388
Following gene: 74317390
Centisome position: 49.89
GC content: 68.94
Gene sequence:
>1806_bases ATGGCCTCTGTTCCCTCCCTGCGGGCTGCGATGACCGGAGCCGGCGTGCTCGCCGCGAGTCTGGTGCTGGCGAACGCGAG CGACCGGGAGTCGTCTCGCCCCGGCGAGGCCGCGTTGCTGGCCGCCCAATCACAGTTTTGCACGTCGGTCCGGGGCCGCC AGGGTGCCCTGTTCGAACAGCTTGCCGCGGCGAAAACCGAGCTCGGGCCTTTTCCGACCGAGCGAGGGGCAGGCGACCCG GCCTCCTCGGCGGCGCCGCCGCTCTTCGAGAATCTCGGCTCCCTCCACTTCCCGATCACCACGGCCACGTCCGCCGCGCA GCGCTATTTCGACCAGGGTTTGAAGCTCGCCTACGCGTTCAATCATGCCGAAGCCGCGCGCGCGTTCCGCCACGCGCAAC GCCTCGATCCGCACTGCCCGCTCTGCTACTGGGGGGAAGCCCTGGTGCTCGGCCCCAACATCAACGCGCCGATGGAGCCG GCAGCCAACACGGCCGCCCTCGAGGCCCTGCGTCGCGCCCAAGCCCTCGTGGACGTCGCGAACCCGAAGGAACGTGCGCT CATCGGCGCCCTCGCCCGACGGTACGCGGACGAACCGGACGGGGCGCGTGGCGGCCTAGACGCGGGCTATGCTGATGCGA TGCGCGCGGTTGCTGCGCGTTACTCGGACGACGCCGACGTCAGCTTGCTGTACGTCGAATCGCTGATGGATCTGTCGCCT TGGGACTACTGGGAAGCGGCCGGCACCCGGCCCAAGGGGCGTACTGCGGAAATCGTCGCCCTGCTCGAGAAAGTGCTGCA GAAGCGTCCCGACCATCCCGGTGCGATCCATTTCTACATCCACATGGTCGAAGCGTCGGCCGACCCCGGCCGGGCTCTGC CCTACGCGAACAGGCTCGGCGACCTGATGCCGGACGCGGGGCATCTCGTCCACATGCCCTTCCACATCTACTACCGCGTC GGACGTTACAAGGACGCCATCGAAGCCAACCGGCGGGCCGTGGCGGTCGATGAGCGCTACCTCGCCGCGGCTTCACCCAT CGGCATCTATCCGCTTGCCTACTACCCGCACAACATCCATTCCCTGATGAGTTCGGCACAGATGGCCGGAGACGGTCGAA GCGCGGTCGCCGCGGCAGAGAAACTCGCGCGCGTCGTCAGCGCCGAGACGGGGCGAAGCATCGCCTGGGTGCAGCCGATC CTCGTCGCGCCTTACTTCGCCCATGCCCAGTTCAGCCCGCCCGACGTCGCCCTCGCGCAGCCCGACCCCGGGAGCGAGCT TCCGTATGTGAAAGCGATGTGGCACTACATGCGCGGCGCGGCCTTGGCCTTGCTCGGCAGGCCCGCCGAGGCGCGACGAG AAGTTGCCGCGATGCGCGACCTCGCCCGCCACCGCGATCTGGCCATGCTGGCGCAAAACGGCGTGCCCGCGCCGGACCTG ATCGAACTGGCACAGCAGGTGGTGCTCGGCCGGATCGCACAGTCCGGCGGCGACCTCGTCGCCGCGCAACAAATCTTCGA GCGCGCGGTTGTGCTCGAGGACAAACTCCCCTACTCGGAGCCGCCCTACTGGTACTACCCGGTGCGCCAATCACTCGGCG CCGTCCTGCTCGAGGCCGGCAGACTCGAAGACGCCGAGAGCGCTTTCCGGACCAGCCTCATGCGCACGCCGAACAGCGGT TGGGCCCTCTATGGACTGGCGGTCGCTTATGCGCGTCAGGGCAGGCAGGGCGCGGCCGCAGAGGTCCGCGAGCGGTTCGC GCGGGCCTGGGCCGGCGACGCTGCCCCCGATCTTGCCCGGCTCTAA
Upstream 100 bases:
>100_bases CGCGGTCACGGCGCCTCGCTCCCTCACCGCCTTGATTGAAGGCCGCGCTGATCTACATAAAGAAGAGCGGGCCGAGAGTC GGCTCGCCAAGGAGACGGCG
Downstream 100 bases:
>100_bases CGGTTCGGGTGTTTCGCTCGTTTGAAAGGAGACCACGTCATGAATACAAAAATTCTCACCGCCGCCCTGCTCGGCGCAAG CCTCTCGGTGCCTGTCGCGC
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: TPR Domain-Containing Protein; TPR Domain Protein; Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Repeat Protein; Tetratricopeptide Domain Protein; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Domain-Containing Protein; TPR Repeat Protein; Redoxin Domain-Containing Protein; Tetratricopeptide Region; Tetratricopeptide Repeat Domain Protein
Number of amino acids: Translated: 601; Mature: 600
Protein sequence:
>601_residues MASVPSLRAAMTGAGVLAASLVLANASDRESSRPGEAALLAAQSQFCTSVRGRQGALFEQLAAAKTELGPFPTERGAGDP ASSAAPPLFENLGSLHFPITTATSAAQRYFDQGLKLAYAFNHAEAARAFRHAQRLDPHCPLCYWGEALVLGPNINAPMEP AANTAALEALRRAQALVDVANPKERALIGALARRYADEPDGARGGLDAGYADAMRAVAARYSDDADVSLLYVESLMDLSP WDYWEAAGTRPKGRTAEIVALLEKVLQKRPDHPGAIHFYIHMVEASADPGRALPYANRLGDLMPDAGHLVHMPFHIYYRV GRYKDAIEANRRAVAVDERYLAAASPIGIYPLAYYPHNIHSLMSSAQMAGDGRSAVAAAEKLARVVSAETGRSIAWVQPI LVAPYFAHAQFSPPDVALAQPDPGSELPYVKAMWHYMRGAALALLGRPAEARREVAAMRDLARHRDLAMLAQNGVPAPDL IELAQQVVLGRIAQSGGDLVAAQQIFERAVVLEDKLPYSEPPYWYYPVRQSLGAVLLEAGRLEDAESAFRTSLMRTPNSG WALYGLAVAYARQGRQGAAAEVRERFARAWAGDAAPDLARL
Sequences:
>Translated_601_residues MASVPSLRAAMTGAGVLAASLVLANASDRESSRPGEAALLAAQSQFCTSVRGRQGALFEQLAAAKTELGPFPTERGAGDP ASSAAPPLFENLGSLHFPITTATSAAQRYFDQGLKLAYAFNHAEAARAFRHAQRLDPHCPLCYWGEALVLGPNINAPMEP AANTAALEALRRAQALVDVANPKERALIGALARRYADEPDGARGGLDAGYADAMRAVAARYSDDADVSLLYVESLMDLSP WDYWEAAGTRPKGRTAEIVALLEKVLQKRPDHPGAIHFYIHMVEASADPGRALPYANRLGDLMPDAGHLVHMPFHIYYRV GRYKDAIEANRRAVAVDERYLAAASPIGIYPLAYYPHNIHSLMSSAQMAGDGRSAVAAAEKLARVVSAETGRSIAWVQPI LVAPYFAHAQFSPPDVALAQPDPGSELPYVKAMWHYMRGAALALLGRPAEARREVAAMRDLARHRDLAMLAQNGVPAPDL IELAQQVVLGRIAQSGGDLVAAQQIFERAVVLEDKLPYSEPPYWYYPVRQSLGAVLLEAGRLEDAESAFRTSLMRTPNSG WALYGLAVAYARQGRQGAAAEVRERFARAWAGDAAPDLARL >Mature_600_residues ASVPSLRAAMTGAGVLAASLVLANASDRESSRPGEAALLAAQSQFCTSVRGRQGALFEQLAAAKTELGPFPTERGAGDPA SSAAPPLFENLGSLHFPITTATSAAQRYFDQGLKLAYAFNHAEAARAFRHAQRLDPHCPLCYWGEALVLGPNINAPMEPA ANTAALEALRRAQALVDVANPKERALIGALARRYADEPDGARGGLDAGYADAMRAVAARYSDDADVSLLYVESLMDLSPW DYWEAAGTRPKGRTAEIVALLEKVLQKRPDHPGAIHFYIHMVEASADPGRALPYANRLGDLMPDAGHLVHMPFHIYYRVG RYKDAIEANRRAVAVDERYLAAASPIGIYPLAYYPHNIHSLMSSAQMAGDGRSAVAAAEKLARVVSAETGRSIAWVQPIL VAPYFAHAQFSPPDVALAQPDPGSELPYVKAMWHYMRGAALALLGRPAEARREVAAMRDLARHRDLAMLAQNGVPAPDLI ELAQQVVLGRIAQSGGDLVAAQQIFERAVVLEDKLPYSEPPYWYYPVRQSLGAVLLEAGRLEDAESAFRTSLMRTPNSGW ALYGLAVAYARQGRQGAAAEVRERFARAWAGDAAPDLARL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64773; Mature: 64642
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASVPSLRAAMTGAGVLAASLVLANASDRESSRPGEAALLAAQSQFCTSVRGRQGALFEQ CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH LAAAKTELGPFPTERGAGDPASSAAPPLFENLGSLHFPITTATSAAQRYFDQGLKLAYAF HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEEE NHAEAARAFRHAQRLDPHCPLCYWGEALVLGPNINAPMEPAANTAALEALRRAQALVDVA CHHHHHHHHHHHHHCCCCCCEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCC NPKERALIGALARRYADEPDGARGGLDAGYADAMRAVAARYSDDADVSLLYVESLMDLSP CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCC WDYWEAAGTRPKGRTAEIVALLEKVLQKRPDHPGAIHFYIHMVEASADPGRALPYANRLG CCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCHHHHH DLMPDAGHLVHMPFHIYYRVGRYKDAIEANRRAVAVDERYLAAASPIGIYPLAYYPHNIH HCCCCCCCEEECCHHEEHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCCCEEEECCCHHH SLMSSAQMAGDGRSAVAAAEKLARVVSAETGRSIAWVQPILVAPYFAHAQFSPPDVALAQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHCCCCCCCCCEEEC PDPGSELPYVKAMWHYMRGAALALLGRPAEARREVAAMRDLARHRDLAMLAQNGVPAPDL CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH IELAQQVVLGRIAQSGGDLVAAQQIFERAVVLEDKLPYSEPPYWYYPVRQSLGAVLLEAG HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHC RLEDAESAFRTSLMRTPNSGWALYGLAVAYARQGRQGAAAEVRERFARAWAGDAAPDLAR CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHC L C >Mature Secondary Structure ASVPSLRAAMTGAGVLAASLVLANASDRESSRPGEAALLAAQSQFCTSVRGRQGALFEQ CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH LAAAKTELGPFPTERGAGDPASSAAPPLFENLGSLHFPITTATSAAQRYFDQGLKLAYAF HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEEE NHAEAARAFRHAQRLDPHCPLCYWGEALVLGPNINAPMEPAANTAALEALRRAQALVDVA CHHHHHHHHHHHHHCCCCCCEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCC NPKERALIGALARRYADEPDGARGGLDAGYADAMRAVAARYSDDADVSLLYVESLMDLSP CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCC WDYWEAAGTRPKGRTAEIVALLEKVLQKRPDHPGAIHFYIHMVEASADPGRALPYANRLG CCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCHHHHH DLMPDAGHLVHMPFHIYYRVGRYKDAIEANRRAVAVDERYLAAASPIGIYPLAYYPHNIH HCCCCCCCEEECCHHEEHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCCCEEEECCCHHH SLMSSAQMAGDGRSAVAAAEKLARVVSAETGRSIAWVQPILVAPYFAHAQFSPPDVALAQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHCCCCCCCCCEEEC PDPGSELPYVKAMWHYMRGAALALLGRPAEARREVAAMRDLARHRDLAMLAQNGVPAPDL CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH IELAQQVVLGRIAQSGGDLVAAQQIFERAVVLEDKLPYSEPPYWYYPVRQSLGAVLLEAG HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHC RLEDAESAFRTSLMRTPNSGWALYGLAVAYARQGRQGAAAEVRERFARAWAGDAAPDLAR CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHC L C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA