| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317353
Identifier: 74317353
GI number: 74317353
Start: 1419294
End: 1420583
Strand: Reverse
Name: 74317353
Synonym: Tbd_1335
Alternate gene names: NA
Gene position: 1420583-1419294 (Counterclockwise)
Preceding gene: 74317354
Following gene: 74317352
Centisome position: 48.82
GC content: 68.06
Gene sequence:
>1290_bases ATGGTCACCTCCCTATCTGCCGCCCGCACGCTGCGGCCCACGCTTTGCCGTAGCGTTGCGCTGTTCGCACTGTCGGGCCT CGCCAGCACGGCATGCGCGGCGTCTCTTTCCTTCGATGACGCGCTCGCGCTGGCCGTGCGGGAAACCCCAGTATTGCGCA GCGTCGCGGCGCAGAGCGACGCCGCGCGCAAAACAGCGATTCCGGCCGGCGAATTGCCGGATCCAAAGCTGGTGCTCGGC ATCGACAACCTGCCTATTGAAGGCGCCGACCGTTTCAGCCTGACCGGCGACGGCATGACCATGCAGCGCCTCGGCCTCAT GCAGGAATTCCCCAACGCCGCCAAGCGTGCTGCCCGCGTTTCGGCGGCGCAGGGACGCGTTGCCCAGGCGGAAGCGCAAA CACGCATCACCCGGCTCGCTGTGTTGCGGGAAACGGCGGTCGCCTGGATTGCGCGGGATGCCGTCGAGCGCCAGCTCGCC CGCATCGATTCGCTGGAGGGCGAGAACCACCTGTTAGATGCCGTGGTGCGTGCCCGTATCGCCGGCGGCAAGGGCAGTGC GCTGGAGGCGCTGGCGTCGCGTCAGGAAGCCGCGATGATCGATGCGCGCCGGGATGAGCTGACTGCGCGCCGCCAACAAG CCATCGCGGCGCTCAGACGCTGGGTCGGGCCGCGGGCGGAGGCGCCACTGGAAGGCAGCGTTCCGGACTGGCCGGTCGTC CACGGCAAGCTCGCGCACGCGCTGCATGATCACCCGGAGCTGGCGATATTCGAGCCTAGGGGGCGCGTGCTGGATGCGGA AGCGGCCGAAGCCCGCGCTGAGAAGAAACCCGACTGGACGCTGGAACTGGCATACCAGAAGCGCGGCGCGCGGTTCGGCG ATATGGCCATGGTGCAGGTGAGCTTTGACCTGCCGGTGTTTGCCGCCGCCCGCCAGGATCCGAAGATCGCGGCCCGGCTT GCCGAGCGCGAAGGACTTGATGCCGAACGCGAAGCGGTGTTGCGCGAACACGCGGCGATGCTGGAGACGGATTTTGCTGA GCACCAGCGCCTCGCCCTCGCCGTCAAGCGCCAGCGCGAAGTGCTGCTGCCGCTGGCCGGCGAAAAGGTGGATCTGGCGC TGGCGGCCTGGCGCAGCGGCAAGGGCGAGCTCGTCGATCTGGTGATGGCGCGGCGCGAGCGCATCGACGCCGAACTCATG GCCATCGCGCTCGAAGGCGAGCGCCGACAGTTGGCCGCCCGCCTGCTCTATGCCTACAGCGAACCCGATTTGACCGGAGA AAAACAATGA
Upstream 100 bases:
>100_bases GTGCTGCACTGCGTTCGCCCCGCGCGGACGACAGTTCGGCTATTTCGTGCCATCACGCCGCTACCGGTCTGATGTTGCCG TTCTCGCAAGGAGTTGGAAC
Downstream 100 bases:
>100_bases ATCGCCAAACGATTAAAAAAACCGTGCTGGGCCTCTTCGTCGTGGTTGCACTGCTCGCCGCCGGCGTGGCGGCCGGCCTC TGGTGGGCCGGCCGCTACCC
Product: CzcC family heavy metal RND efflux outer membrane protein
Products: NA
Alternate protein names: CzcC Family Heavy Metal RND Efflux Outer Membrane Protein; Outer Membrane Cation Efflux Protein; Outer Membrane Protein; Heavy Metal RND Efflux Outer Membrane Protein CzcC Family; Cobalt-Zinc-Cadmium Resistance Outer Membrane Porin; Heavy Metal RND Efflux CzcC Family; Cation Resistance Protein CzcC; Efflux System Outer Membrane Protein; Outer Membrane Silver Efflux Protein; Outer Membrane Cation Efflux System Protein CzcC; Cation Efflux Protein
Number of amino acids: Translated: 429; Mature: 429
Protein sequence:
>429_residues MVTSLSAARTLRPTLCRSVALFALSGLASTACAASLSFDDALALAVRETPVLRSVAAQSDAARKTAIPAGELPDPKLVLG IDNLPIEGADRFSLTGDGMTMQRLGLMQEFPNAAKRAARVSAAQGRVAQAEAQTRITRLAVLRETAVAWIARDAVERQLA RIDSLEGENHLLDAVVRARIAGGKGSALEALASRQEAAMIDARRDELTARRQQAIAALRRWVGPRAEAPLEGSVPDWPVV HGKLAHALHDHPELAIFEPRGRVLDAEAAEARAEKKPDWTLELAYQKRGARFGDMAMVQVSFDLPVFAAARQDPKIAARL AEREGLDAEREAVLREHAAMLETDFAEHQRLALAVKRQREVLLPLAGEKVDLALAAWRSGKGELVDLVMARRERIDAELM AIALEGERRQLAARLLYAYSEPDLTGEKQ
Sequences:
>Translated_429_residues MVTSLSAARTLRPTLCRSVALFALSGLASTACAASLSFDDALALAVRETPVLRSVAAQSDAARKTAIPAGELPDPKLVLG IDNLPIEGADRFSLTGDGMTMQRLGLMQEFPNAAKRAARVSAAQGRVAQAEAQTRITRLAVLRETAVAWIARDAVERQLA RIDSLEGENHLLDAVVRARIAGGKGSALEALASRQEAAMIDARRDELTARRQQAIAALRRWVGPRAEAPLEGSVPDWPVV HGKLAHALHDHPELAIFEPRGRVLDAEAAEARAEKKPDWTLELAYQKRGARFGDMAMVQVSFDLPVFAAARQDPKIAARL AEREGLDAEREAVLREHAAMLETDFAEHQRLALAVKRQREVLLPLAGEKVDLALAAWRSGKGELVDLVMARRERIDAELM AIALEGERRQLAARLLYAYSEPDLTGEKQ >Mature_429_residues MVTSLSAARTLRPTLCRSVALFALSGLASTACAASLSFDDALALAVRETPVLRSVAAQSDAARKTAIPAGELPDPKLVLG IDNLPIEGADRFSLTGDGMTMQRLGLMQEFPNAAKRAARVSAAQGRVAQAEAQTRITRLAVLRETAVAWIARDAVERQLA RIDSLEGENHLLDAVVRARIAGGKGSALEALASRQEAAMIDARRDELTARRQQAIAALRRWVGPRAEAPLEGSVPDWPVV HGKLAHALHDHPELAIFEPRGRVLDAEAAEARAEKKPDWTLELAYQKRGARFGDMAMVQVSFDLPVFAAARQDPKIAARL AEREGLDAEREAVLREHAAMLETDFAEHQRLALAVKRQREVLLPLAGEKVDLALAAWRSGKGELVDLVMARRERIDAELM AIALEGERRQLAARLLYAYSEPDLTGEKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46654; Mature: 46654
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTSLSAARTLRPTLCRSVALFALSGLASTACAASLSFDDALALAVRETPVLRSVAAQSD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHH AARKTAIPAGELPDPKLVLGIDNLPIEGADRFSLTGDGMTMQRLGLMQEFPNAAKRAARV HHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHCCHHHHHHHHH SAAQGRVAQAEAQTRITRLAVLRETAVAWIARDAVERQLARIDSLEGENHLLDAVVRARI HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH AGGKGSALEALASRQEAAMIDARRDELTARRQQAIAALRRWVGPRAEAPLEGSVPDWPVV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH HGKLAHALHDHPELAIFEPRGRVLDAEAAEARAEKKPDWTLELAYQKRGARFGDMAMVQV HHHHHHHHCCCCCEEEECCCCCEECCHHHHHHHCCCCCCEEEEHHHHCCCCCCCEEEEEE SFDLPVFAAARQDPKIAARLAEREGLDAEREAVLREHAAMLETDFAEHQRLALAVKRQRE EECCCEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLLPLAGEKVDLALAAWRSGKGELVDLVMARRERIDAELMAIALEGERRQLAARLLYAYS EECCCCCCCEEEEHEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHC EPDLTGEKQ CCCCCCCCC >Mature Secondary Structure MVTSLSAARTLRPTLCRSVALFALSGLASTACAASLSFDDALALAVRETPVLRSVAAQSD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHH AARKTAIPAGELPDPKLVLGIDNLPIEGADRFSLTGDGMTMQRLGLMQEFPNAAKRAARV HHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHCCHHHHHHHHH SAAQGRVAQAEAQTRITRLAVLRETAVAWIARDAVERQLARIDSLEGENHLLDAVVRARI HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH AGGKGSALEALASRQEAAMIDARRDELTARRQQAIAALRRWVGPRAEAPLEGSVPDWPVV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH HGKLAHALHDHPELAIFEPRGRVLDAEAAEARAEKKPDWTLELAYQKRGARFGDMAMVQV HHHHHHHHCCCCCEEEECCCCCEECCHHHHHHHCCCCCCEEEEHHHHCCCCCCCEEEEEE SFDLPVFAAARQDPKIAARLAEREGLDAEREAVLREHAAMLETDFAEHQRLALAVKRQRE EECCCEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLLPLAGEKVDLALAAWRSGKGELVDLVMARRERIDAELMAIALEGERRQLAARLLYAYS EECCCCCCCEEEEHEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHC EPDLTGEKQ CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA