| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yxiO [H]
Identifier: 74317292
GI number: 74317292
Start: 1340390
End: 1341682
Strand: Direct
Name: yxiO [H]
Synonym: Tbd_1274
Alternate gene names: 74317292
Gene position: 1340390-1341682 (Clockwise)
Preceding gene: 74317291
Following gene: 74317293
Centisome position: 46.06
GC content: 70.38
Gene sequence:
>1293_bases ATGGCGCCCCCGCTGCTGCAAGCGGGCGTGCGCCGGCACGAAGTCGCCGCGTGGGCGATGTACGACTTCGCGAACTCGGG CTACACGACGGTCGTCATCACCGCGGTGTTCAGCGCCTATTTCGTCGGTGTCGTCGCCGCGGACGCGCCGTGGGCGACCT TCGTCTGGACGCTAGCACTCTCGGCGTCCTACGCGCTGGTGATGCTGAGCGCGCCGCTCGTCGGCGCCTGGGCCGACGCC CACGCGAGCAAGAAGAAGCTGCTCTGGCTGACGACCCTCGGCTGCGTCGGCTTCACGGCGCTGCTGTACTTCGCGGCGCC GGGCGCGCTCGTGCTCGCAGTCGCCGCGCTCGTTATTTCGAATTACTTCTTCGGCACAGGCGAGAACCTGATCGCGGCCT TCCTGCCCGAACTCGCGCGGCCGCGGGCGCTCGGCCGGGTGTCGGGCTGGGGCTGGGCGCTCGGCTATTTCGGCGGTCTC GTCGCGCTCGGCGTCTGCCTCGCCTACATCGGCTGGGCGCGGGCGCGCGGGCAGGGCGCCACGGACTTCGTGCCCGTGAC GATGCTGCTCACGGCGGGCCTGTTCGCGCTGGCGAGCCTGCCGACGCTGATCCTGCTGCGCGAGCGCGCGACAGCGCGCG CCGAGCCGTCGCGAAAAAGCGCTTGGTCGCAGCTGCGCCACACGCTGTCGCACCTCGACCGGCTGCCCGATCTCAAGGCC TTCCTCGTCTGTACCGTGCTCTACCAGGCGGGCATCCAGGCCGTCATCACACTGGCCGCGATCTACGCGAGCCAGGTGTT CCACTTCGATACCGAACGGACGATCCGCCTCGTGTTCGTGGTCAACGTCACGGCCGCCCTCGGGGCGTTCCTCTTCGGCC ACGTGCAGGACCGGATCGGCCACGTGCGGGCGATCGCACTGACCCTCGTAGGCTGGATCGTGATGGTCGCCCTCGCGTGG GCGGCGCCCGACGAACGCATGTTCTGGGTCGCCGCCAATCTCGCCGGCCTGTGCATGGGCGCCTCGCAATCGGCCGGTCG CGCGATGGTCGGTCTGCTCGCACCGCCGGCGCAGCAGGCCGAATTCTTCGGCCTCTGGGGGCTCGCCGTGAAGCTCGCCT CGATACTCGGCCCGTTGACCTACGGCGTGGCGACCTGGCTTACGCACGGCGACCACCGCCAGGCCTTGCTCGTCACCGGC AGCTATTTCGTTGCCGGCCTGTGGACGCTGCGACACGTGCGCGCCGCACGCGGGCGCCGCGCCGCACAGCGTTTCGCGCG CGCAGCGGCATGA
Upstream 100 bases:
>100_bases GCATCGTCGAACGCGGCCGCCATCCCGACCTACTCGTGAAAAACGGCGTCTACGCCCACATGTGGGCACTGCAGCAGCAG GCCGAGGACGAGACCGCCTG
Downstream 100 bases:
>100_bases GCGCGGCCATGCTCCTCGAAACCGACTGGGCGCGCGACGCACCGCGGCTCGCCGCGGTGCGTCGAGCCGTCTTCATCGAC GAACAGGGCGTGCCGGAGCA
Product: putative integral membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 430; Mature: 429
Protein sequence:
>430_residues MAPPLLQAGVRRHEVAAWAMYDFANSGYTTVVITAVFSAYFVGVVAADAPWATFVWTLALSASYALVMLSAPLVGAWADA HASKKKLLWLTTLGCVGFTALLYFAAPGALVLAVAALVISNYFFGTGENLIAAFLPELARPRALGRVSGWGWALGYFGGL VALGVCLAYIGWARARGQGATDFVPVTMLLTAGLFALASLPTLILLRERATARAEPSRKSAWSQLRHTLSHLDRLPDLKA FLVCTVLYQAGIQAVITLAAIYASQVFHFDTERTIRLVFVVNVTAALGAFLFGHVQDRIGHVRAIALTLVGWIVMVALAW AAPDERMFWVAANLAGLCMGASQSAGRAMVGLLAPPAQQAEFFGLWGLAVKLASILGPLTYGVATWLTHGDHRQALLVTG SYFVAGLWTLRHVRAARGRRAAQRFARAAA
Sequences:
>Translated_430_residues MAPPLLQAGVRRHEVAAWAMYDFANSGYTTVVITAVFSAYFVGVVAADAPWATFVWTLALSASYALVMLSAPLVGAWADA HASKKKLLWLTTLGCVGFTALLYFAAPGALVLAVAALVISNYFFGTGENLIAAFLPELARPRALGRVSGWGWALGYFGGL VALGVCLAYIGWARARGQGATDFVPVTMLLTAGLFALASLPTLILLRERATARAEPSRKSAWSQLRHTLSHLDRLPDLKA FLVCTVLYQAGIQAVITLAAIYASQVFHFDTERTIRLVFVVNVTAALGAFLFGHVQDRIGHVRAIALTLVGWIVMVALAW AAPDERMFWVAANLAGLCMGASQSAGRAMVGLLAPPAQQAEFFGLWGLAVKLASILGPLTYGVATWLTHGDHRQALLVTG SYFVAGLWTLRHVRAARGRRAAQRFARAAA >Mature_429_residues APPLLQAGVRRHEVAAWAMYDFANSGYTTVVITAVFSAYFVGVVAADAPWATFVWTLALSASYALVMLSAPLVGAWADAH ASKKKLLWLTTLGCVGFTALLYFAAPGALVLAVAALVISNYFFGTGENLIAAFLPELARPRALGRVSGWGWALGYFGGLV ALGVCLAYIGWARARGQGATDFVPVTMLLTAGLFALASLPTLILLRERATARAEPSRKSAWSQLRHTLSHLDRLPDLKAF LVCTVLYQAGIQAVITLAAIYASQVFHFDTERTIRLVFVVNVTAALGAFLFGHVQDRIGHVRAIALTLVGWIVMVALAWA APDERMFWVAANLAGLCMGASQSAGRAMVGLLAPPAQQAEFFGLWGLAVKLASILGPLTYGVATWLTHGDHRQALLVTGS YFVAGLWTLRHVRAARGRRAAQRFARAAA
Specific function: Unknown
COG id: COG2270
COG function: function code R; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46013; Mature: 45882
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPPLLQAGVRRHEVAAWAMYDFANSGYTTVVITAVFSAYFVGVVAADAPWATFVWTLAL CCCCHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH SASYALVMLSAPLVGAWADAHASKKKLLWLTTLGCVGFTALLYFAAPGALVLAVAALVIS HHHHHHHHHHCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH NYFFGTGENLIAAFLPELARPRALGRVSGWGWALGYFGGLVALGVCLAYIGWARARGQGA HHCCCCCHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TDFVPVTMLLTAGLFALASLPTLILLRERATARAEPSRKSAWSQLRHTLSHLDRLPDLKA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHH FLVCTVLYQAGIQAVITLAAIYASQVFHFDTERTIRLVFVVNVTAALGAFLFGHVQDRIG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHH HVRAIALTLVGWIVMVALAWAAPDERMFWVAANLAGLCMGASQSAGRAMVGLLAPPAQQA HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCCCCCCCCCHHHHHCCCCHHHH EFFGLWGLAVKLASILGPLTYGVATWLTHGDHRQALLVTGSYFVAGLWTLRHVRAARGRR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH AAQRFARAAA HHHHHHHHCC >Mature Secondary Structure APPLLQAGVRRHEVAAWAMYDFANSGYTTVVITAVFSAYFVGVVAADAPWATFVWTLAL CCCHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH SASYALVMLSAPLVGAWADAHASKKKLLWLTTLGCVGFTALLYFAAPGALVLAVAALVIS HHHHHHHHHHCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH NYFFGTGENLIAAFLPELARPRALGRVSGWGWALGYFGGLVALGVCLAYIGWARARGQGA HHCCCCCHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TDFVPVTMLLTAGLFALASLPTLILLRERATARAEPSRKSAWSQLRHTLSHLDRLPDLKA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHH FLVCTVLYQAGIQAVITLAAIYASQVFHFDTERTIRLVFVVNVTAALGAFLFGHVQDRIG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHH HVRAIALTLVGWIVMVALAWAAPDERMFWVAANLAGLCMGASQSAGRAMVGLLAPPAQQA HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCCCCCCCCCHHHHHCCCCHHHH EFFGLWGLAVKLASILGPLTYGVATWLTHGDHRQALLVTGSYFVAGLWTLRHVRAARGRR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH AAQRFARAAA HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]