| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is fliH [H]
Identifier: 74317108
GI number: 74317108
Start: 1151927
End: 1152532
Strand: Direct
Name: fliH [H]
Synonym: Tbd_1090
Alternate gene names: 74317108
Gene position: 1151927-1152532 (Clockwise)
Preceding gene: 74317107
Following gene: 74317109
Centisome position: 39.59
GC content: 70.13
Gene sequence:
>606_bases ATGAGCCTGGGCGACAAGCCGTCGGACGACGCCACCGCCTTCGAGCAGTGGGAGGTCGTGGAGGCCGCGCCGGCGAGCCC GGCGGCTCCTGCGGTCGACCCCGAAGCCGAACTCGCGCGCCTGCGCGAGACCGCACACGCCGAAGGTTACGCGGAGGGAA TGGCCGCCGGCCGCGCCGCCGGCGAGCAGGCCTGCGGGCGTATGAAGCAGCTCGTCGAAAGCTTTTCGGCGACACTCGAC AACCTCGATTTCCGCCTCGCCGACATGGTGCTCGACCTGGCGCTCGACGTCGCGCGCCAGGTCGTCGCCGGCGAACTCGC GGTGCGTCCGGAGCGCATCCTCGACGTCGTCAACCTCGCGCTCAAGCAGATGGCCGAGACCAGCCGGGAGGCGCGTCTGC TGCTGCATCCGGACGACGCCGCGCTGGTGCGGCCGCATCTCGACCAGGTGCTCGACAAGAACCGGCTGCGCATCGTCGAG GACGTGCGCATGGTGCGCGGCGGCTGCATGATCGAAACCGGACAGGGCGATCTCGACGGCACACTGCCGGCGCGCTGGCG CCAGGTCGTGCAGGTCCTCGGCTCCAATCAGAACTGGCTCGAATAG
Upstream 100 bases:
>100_bases TGCCGGTGACGGCGATCCAGGCGGCACAGGACGAGGCCGGTGCGACCTTGCGGCGACTCGTCGCCGAGGGCGCGATCGAT TACCCCGAGGAGGAGACGGT
Downstream 100 bases:
>100_bases TATCCTGGGAACCCCGGTTGACCGCTCTTGCTGCTAATTTGCCATCACTTTCTGAATCAGCGTCGAGAATCTTCGATGTC CGAATCTGACGCTACGCATT
Product: flagellar assembly protein FliH
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MSLGDKPSDDATAFEQWEVVEAAPASPAAPAVDPEAELARLRETAHAEGYAEGMAAGRAAGEQACGRMKQLVESFSATLD NLDFRLADMVLDLALDVARQVVAGELAVRPERILDVVNLALKQMAETSREARLLLHPDDAALVRPHLDQVLDKNRLRIVE DVRMVRGGCMIETGQGDLDGTLPARWRQVVQVLGSNQNWLE
Sequences:
>Translated_201_residues MSLGDKPSDDATAFEQWEVVEAAPASPAAPAVDPEAELARLRETAHAEGYAEGMAAGRAAGEQACGRMKQLVESFSATLD NLDFRLADMVLDLALDVARQVVAGELAVRPERILDVVNLALKQMAETSREARLLLHPDDAALVRPHLDQVLDKNRLRIVE DVRMVRGGCMIETGQGDLDGTLPARWRQVVQVLGSNQNWLE >Mature_200_residues SLGDKPSDDATAFEQWEVVEAAPASPAAPAVDPEAELARLRETAHAEGYAEGMAAGRAAGEQACGRMKQLVESFSATLDN LDFRLADMVLDLALDVARQVVAGELAVRPERILDVVNLALKQMAETSREARLLLHPDDAALVRPHLDQVLDKNRLRIVED VRMVRGGCMIETGQGDLDGTLPARWRQVVQVLGSNQNWLE
Specific function: Needed for flagellar regrowth and assembly [H]
COG id: COG1317
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway protein
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliH family [H]
Homologues:
Organism=Escherichia coli, GI87082004, Length=166, Percent_Identity=32.5301204819277, Blast_Score=78, Evalue=3e-16,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000563 - InterPro: IPR018035 [H]
Pfam domain/function: PF02108 FliH [H]
EC number: NA
Molecular weight: Translated: 21905; Mature: 21774
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLGDKPSDDATAFEQWEVVEAAPASPAAPAVDPEAELARLRETAHAEGYAEGMAAGRAA CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GEQACGRMKQLVESFSATLDNLDFRLADMVLDLALDVARQVVAGELAVRPERILDVVNLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LKQMAETSREARLLLHPDDAALVRPHLDQVLDKNRLRIVEDVRMVRGGCMIETGQGDLDG HHHHHHHHHHCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCCCCCC TLPARWRQVVQVLGSNQNWLE CCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SLGDKPSDDATAFEQWEVVEAAPASPAAPAVDPEAELARLRETAHAEGYAEGMAAGRAA CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GEQACGRMKQLVESFSATLDNLDFRLADMVLDLALDVARQVVAGELAVRPERILDVVNLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LKQMAETSREARLLLHPDDAALVRPHLDQVLDKNRLRIVEDVRMVRGGCMIETGQGDLDG HHHHHHHHHHCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCCCCCC TLPARWRQVVQVLGSNQNWLE CCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1646201; 11677609; 2656645 [H]