| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is ybhG [C]
Identifier: 74317102
GI number: 74317102
Start: 1144110
End: 1145180
Strand: Reverse
Name: ybhG [C]
Synonym: Tbd_1084
Alternate gene names: 74317102
Gene position: 1145180-1144110 (Counterclockwise)
Preceding gene: 74317103
Following gene: 74317101
Centisome position: 39.36
GC content: 71.34
Gene sequence:
>1071_bases GTGACTCCCCCTGCGCGCTCATCGGCGGGCAACGCCGGACCGCCGCGGGCAGCGGTGAAACGAATTACACTCGGCTTATT TATTGCGTCCTTTCGGGCTGCCCCGATGAACCTGCATCTCGCTCCCCTTCGGCTCCTGTTCGTGGCATTGCTGGCCGGTT GCCAGGCGGCCGACGAGGACCGGTTTCAAGGCTATGTCGAAGGCGAGCCGGTCCTGGTCGCAGCGCAGCAAAGCGGCCAG TTGACCTCACTGCAGGTGCGACGCGGCGACATGATTGCGACGGGCGCGCCGCTTTTCAGCCAGGATGCGGCGACCGAAGC CGCCAGCCTCGGCGAGGCCCGCGCGCAGCTGGCACAGGCGCAGGCTCAGTTCGGCAATCTCGCGACCGGCAAGCGACCGC CCGAGATCGCGGCGATCGCCGCCCGCGAGCGCGAGGCCGAGGCGCGGCGGGAGCTGTCCGCCGCCCACCTCGCGCGTCAG GAGGCCCTGGTCGCGAAGGGCTTCATCAGCGCCCAAGCCCTCGACGAGGCGCGCGCGCAACTCGCGCGCGACGAGGCCAG CGTCGCGCAAACGCGGGCCGAACTCGCGACCGCGCGCCTGCCGGGCCGCCGCGACGAGCGCGCCGGTGCCCGCGCGGCGG TGTCGGCGAGCCAGGCCGCGCTCGAGCAAAGCGCAATCAGGCTCGAGCAGAAATCGCAGCGCGCCCCCGTGGGCGGTTCG GTGCAGGACGTGTTTTTCCGGGTGGGCGAATGGGCGACGCCGGGGCAGGCGGTGGTCTCGATCCTGCCGCCGCAAAACAT CAAGGTCCGATTCTTCATTCCGGAACCCCGCCTCGGCGCGCTGCGGACCGGGCAAGGCGTCGCGATCCACTGCGACGGCT GCGGCGCCGGGATCCCCGCCACGATCCGCTTCGTCAGCGCCTCCGCCGAATACACGCCGCCCGTGCTGTACAGCGAAAAG AACCGCCATCGGCTCGTCTACCTCGTCGAAGCCTGGCCGGCCGCCGGGGACGCCGCGCGGCTGCACCCGGGGCAGCCCGT GAGCGTCGCCCTCGACAGCGGCAAACGATGA
Upstream 100 bases:
>100_bases CGAAAGCCTATTGCGCGCAGTGCGCACTGCTGGCGCTGCTGACGACCCCCAGCTGACAAACCGCCCTCGCACGGGATCGG CGCCGCCCGTCACGCCGCCC
Downstream 100 bases:
>100_bases GTGGCGATTACGCCATCGACGTGCAGGGCCTGAGCAAATCCTTCGGCCGCAAACGCGTCGTCAACGATCTGAGCCTGCGC GTCGAAGCGGGCGAGATCTA
Product: HlyD family secretion protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MTPPARSSAGNAGPPRAAVKRITLGLFIASFRAAPMNLHLAPLRLLFVALLAGCQAADEDRFQGYVEGEPVLVAAQQSGQ LTSLQVRRGDMIATGAPLFSQDAATEAASLGEARAQLAQAQAQFGNLATGKRPPEIAAIAAREREAEARRELSAAHLARQ EALVAKGFISAQALDEARAQLARDEASVAQTRAELATARLPGRRDERAGARAAVSASQAALEQSAIRLEQKSQRAPVGGS VQDVFFRVGEWATPGQAVVSILPPQNIKVRFFIPEPRLGALRTGQGVAIHCDGCGAGIPATIRFVSASAEYTPPVLYSEK NRHRLVYLVEAWPAAGDAARLHPGQPVSVALDSGKR
Sequences:
>Translated_356_residues MTPPARSSAGNAGPPRAAVKRITLGLFIASFRAAPMNLHLAPLRLLFVALLAGCQAADEDRFQGYVEGEPVLVAAQQSGQ LTSLQVRRGDMIATGAPLFSQDAATEAASLGEARAQLAQAQAQFGNLATGKRPPEIAAIAAREREAEARRELSAAHLARQ EALVAKGFISAQALDEARAQLARDEASVAQTRAELATARLPGRRDERAGARAAVSASQAALEQSAIRLEQKSQRAPVGGS VQDVFFRVGEWATPGQAVVSILPPQNIKVRFFIPEPRLGALRTGQGVAIHCDGCGAGIPATIRFVSASAEYTPPVLYSEK NRHRLVYLVEAWPAAGDAARLHPGQPVSVALDSGKR >Mature_355_residues TPPARSSAGNAGPPRAAVKRITLGLFIASFRAAPMNLHLAPLRLLFVALLAGCQAADEDRFQGYVEGEPVLVAAQQSGQL TSLQVRRGDMIATGAPLFSQDAATEAASLGEARAQLAQAQAQFGNLATGKRPPEIAAIAAREREAEARRELSAAHLARQE ALVAKGFISAQALDEARAQLARDEASVAQTRAELATARLPGRRDERAGARAAVSASQAALEQSAIRLEQKSQRAPVGGSV QDVFFRVGEWATPGQAVVSILPPQNIKVRFFIPEPRLGALRTGQGVAIHCDGCGAGIPATIRFVSASAEYTPPVLYSEKN RHRLVYLVEAWPAAGDAARLHPGQPVSVALDSGKR
Specific function: Unknown
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0194 family [H]
Homologues:
Organism=Escherichia coli, GI1787013, Length=287, Percent_Identity=28.9198606271777, Blast_Score=75, Evalue=9e-15, Organism=Escherichia coli, GI1789900, Length=277, Percent_Identity=26.3537906137184, Blast_Score=70, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 - InterPro: IPR022936 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 37563; Mature: 37432
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPPARSSAGNAGPPRAAVKRITLGLFIASFRAAPMNLHLAPLRLLFVALLAGCQAADED CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCHH RFQGYVEGEPVLVAAQQSGQLTSLQVRRGDMIATGAPLFSQDAATEAASLGEARAQLAQA HCCCEECCCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH QAQFGNLATGKRPPEIAAIAAREREAEARRELSAAHLARQEALVAKGFISAQALDEARAQ HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LARDEASVAQTRAELATARLPGRRDERAGARAAVSASQAALEQSAIRLEQKSQRAPVGGS HHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC VQDVFFRVGEWATPGQAVVSILPPQNIKVRFFIPEPRLGALRTGQGVAIHCDGCGAGIPA HHHHHHHHCCCCCCCHHEEEEECCCCEEEEEEECCCCCCCEECCCCEEEEECCCCCCCCE TIRFVSASAEYTPPVLYSEKNRHRLVYLVEAWPAAGDAARLHPGQPVSVALDSGKR EEEEEECCCCCCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCC >Mature Secondary Structure TPPARSSAGNAGPPRAAVKRITLGLFIASFRAAPMNLHLAPLRLLFVALLAGCQAADED CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCHH RFQGYVEGEPVLVAAQQSGQLTSLQVRRGDMIATGAPLFSQDAATEAASLGEARAQLAQA HCCCEECCCCEEEEECCCCCEEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH QAQFGNLATGKRPPEIAAIAAREREAEARRELSAAHLARQEALVAKGFISAQALDEARAQ HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LARDEASVAQTRAELATARLPGRRDERAGARAAVSASQAALEQSAIRLEQKSQRAPVGGS HHHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC VQDVFFRVGEWATPGQAVVSILPPQNIKVRFFIPEPRLGALRTGQGVAIHCDGCGAGIPA HHHHHHHHCCCCCCCHHEEEEECCCCEEEEEEECCCCCCCEECCCCEEEEECCCCCCCCE TIRFVSASAEYTPPVLYSEKNRHRLVYLVEAWPAAGDAARLHPGQPVSVALDSGKR EEEEEECCCCCCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA