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The map label for this gene is ygiD [H]

Identifier: 74317082

GI number: 74317082

Start: 1125479

End: 1126285

Strand: Reverse

Name: ygiD [H]

Synonym: Tbd_1064

Alternate gene names: 74317082

Gene position: 1126285-1125479 (Counterclockwise)

Preceding gene: 74317083

Following gene: 74317081

Centisome position: 38.71

GC content: 70.01

Gene sequence:

>807_bases
ATGACTCCCGCCCCTTGCCTCTTCATTTCCCACGGTTCGCCGATGTTCGCGCTCGAGCCGGGACTGCTCGGCGCGAACCT
GCGCGCGCTCGGTGAATCGCTCGCGGACGTCGTCGCGGTGCTGGTCGTGTCGCCGCACTGGCAAACCCGTGGGCTGCGCG
TCGGCAGCAGCCCGGCGCCGGAAACCCTTCATGATTTCAGCGGTTTTCCGGCGCCGCTCTATGCGCTGCAATACCCCGCG
CCGGGCGCGCCGCGATGGGCGCAAGAGGCTGCGACACTGCTCGCGCAGGCCGGATTCGACGCGGGACTCGACGAACGGCA
CGGGCTCGATCACGGCGCCTGGGTGCCGCTGCGGCATCTGTTCCCGAAGGCCGACAAGCCGGTGTTTCAGGTCTCGCTGC
CGCACGACATCGATGCAGCCGGCGCGCTGCGTCTGGGTCGGGCGCTCGCGGCGCTGCGCAGGCGGGGCGTGCTGATCGTC
GGCTCCGGCAGCCTTACGCACAATCTCTACGAGTTCCGCCAGCATGTCCGCGATCCCGAGTACGCGCAGGAATTCGCCGA
CTGGGTTCGCGGTGCGGTCGAGGCCCGCGATGTCGCGGCACTGGTCGACTATCGCCGGCGCGCGCCCCACGCTGCGCGCG
CGCATCCGAGCGAGGATCATTATCTGCCGCTGCTGGTGGCCGCGGGCGCCAGTGATGCGCGGGACGCAACCCGGCTGATC
GAAGGCGGCATGACCTACGAGGTGCTGTCGATGGACTCGTTCGCGTTCGGCCTGCCGGGCGCCGACAGCAGCGCGCCGCT
ACGGTAG

Upstream 100 bases:

>100_bases
CTCGGGACGTTCGCGACGCGCGAAGCGGCGGAAAAGCACGAGCGCGAAATCCAGTTCTTCAAACGTCGGCACTGACGCGA
AGCGGGTCCGGCCCGGCCTC

Downstream 100 bases:

>100_bases
CGGGCGATCATGTTTTCATACGGCGCTTTCTTGCTCCGGCCTCGCCGCCCCGACGGGCGGCCCGAGCGGGCGTCCCGCGC
GTTCGCCCGATGCTTCCTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MTPAPCLFISHGSPMFALEPGLLGANLRALGESLADVVAVLVVSPHWQTRGLRVGSSPAPETLHDFSGFPAPLYALQYPA
PGAPRWAQEAATLLAQAGFDAGLDERHGLDHGAWVPLRHLFPKADKPVFQVSLPHDIDAAGALRLGRALAALRRRGVLIV
GSGSLTHNLYEFRQHVRDPEYAQEFADWVRGAVEARDVAALVDYRRRAPHAARAHPSEDHYLPLLVAAGASDARDATRLI
EGGMTYEVLSMDSFAFGLPGADSSAPLR

Sequences:

>Translated_268_residues
MTPAPCLFISHGSPMFALEPGLLGANLRALGESLADVVAVLVVSPHWQTRGLRVGSSPAPETLHDFSGFPAPLYALQYPA
PGAPRWAQEAATLLAQAGFDAGLDERHGLDHGAWVPLRHLFPKADKPVFQVSLPHDIDAAGALRLGRALAALRRRGVLIV
GSGSLTHNLYEFRQHVRDPEYAQEFADWVRGAVEARDVAALVDYRRRAPHAARAHPSEDHYLPLLVAAGASDARDATRLI
EGGMTYEVLSMDSFAFGLPGADSSAPLR
>Mature_267_residues
TPAPCLFISHGSPMFALEPGLLGANLRALGESLADVVAVLVVSPHWQTRGLRVGSSPAPETLHDFSGFPAPLYALQYPAP
GAPRWAQEAATLLAQAGFDAGLDERHGLDHGAWVPLRHLFPKADKPVFQVSLPHDIDAAGALRLGRALAALRRRGVLIVG
SGSLTHNLYEFRQHVRDPEYAQEFADWVRGAVEARDVAALVDYRRRAPHAARAHPSEDHYLPLLVAAGASDARDATRLIE
GGMTYEVLSMDSFAFGLPGADSSAPLR

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=265, Percent_Identity=38.4905660377359, Blast_Score=160, Evalue=6e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28812; Mature: 28681

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAPCLFISHGSPMFALEPGLLGANLRALGESLADVVAVLVVSPHWQTRGLRVGSSPAP
CCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCC
ETLHDFSGFPAPLYALQYPAPGAPRWAQEAATLLAQAGFDAGLDERHGLDHGAWVPLRHL
HHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCHHHH
FPKADKPVFQVSLPHDIDAAGALRLGRALAALRRRGVLIVGSGSLTHNLYEFRQHVRDPE
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCCCHH
YAQEFADWVRGAVEARDVAALVDYRRRAPHAARAHPSEDHYLPLLVAAGASDARDATRLI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
EGGMTYEVLSMDSFAFGLPGADSSAPLR
HCCCEEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TPAPCLFISHGSPMFALEPGLLGANLRALGESLADVVAVLVVSPHWQTRGLRVGSSPAP
CCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCC
ETLHDFSGFPAPLYALQYPAPGAPRWAQEAATLLAQAGFDAGLDERHGLDHGAWVPLRHL
HHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCHHHH
FPKADKPVFQVSLPHDIDAAGALRLGRALAALRRRGVLIVGSGSLTHNLYEFRQHVRDPE
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCCCHH
YAQEFADWVRGAVEARDVAALVDYRRRAPHAARAHPSEDHYLPLLVAAGASDARDATRLI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
EGGMTYEVLSMDSFAFGLPGADSSAPLR
HCCCEEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]