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The map label for this gene is cobD [H]

Identifier: 74317062

GI number: 74317062

Start: 1108797

End: 1109714

Strand: Direct

Name: cobD [H]

Synonym: Tbd_1044

Alternate gene names: 74317062

Gene position: 1108797-1109714 (Clockwise)

Preceding gene: 74317061

Following gene: 74317063

Centisome position: 38.11

GC content: 68.63

Gene sequence:

>918_bases
ATGGTCTTTTTCTCGGTCCTCGCCGCCGTCGCGCTCGAGCATCTGCGGCCGCTGCGCCAGCCGATGCTCCACTATCGGCA
TTACACGCGTTTCATCCACTGGCTCGAAGGCAAGCTCAACGCCGGGGAATACACGCATGGCGCGATTGCCTGGACGCTTG
CCGTCGTTCCCTGGCTCGTCGCGGTGTGGGCGATCTTCGCCGTGCTCGAAGACGTCAGCCCGGTTCTGGGCTGGGTGTGG
AACGTGGCCGTGCTGTATTTCACGCTCGGGTTCAAGTATTACAGCGACAACGCCGAGCGCATCGCCCACCTGCTGCGCGC
GGGCGACCTCGACGCGGCGCGCGCGCAGCTCGGCCTGTGGCGCGGCGGCGACACCACCCACTTCACGAGCGACGACATCA
CGCGCGTGACGATCGAGCAGGTGATGGCGGAAAGCCACCGGCAGATGTTCGGCGTGTTGTTCTGGTTCGTGCTGCTGGCG
CCGCTCGGCCCGGTCGGCGCCGTCCTGTTCCGCGCGGCGTCGATTCTCTCGCGGCGCTGGGAGGTATCGCGCGGCCGCTT
CGGCCTGTGCGCGTGCCGCGTCTTCCATATCATCAACTGGGTGCCCGCGCGTCTGACCGCACTGACCTACGCGATCGCCG
GCAACTTCGAGGACGCGACCTACTGCTGGCGCACCCAGGCCGCGGCCTGGCCGGAGGAGGAAGAGGGCGTCGTGATCGCC
GCCGGCGCCGGCGCGATGGGGGTCAGGCTCGGGCAACCCGTCACGGTCGGCGGCGAGTCCGTGTGGCGGCCTGAATTGGG
GACGGGGCAGGCGCCCGACCCCGACTTCATCGCCAGCGCGGTCAGCATGATCTGGCGCGGCCTCGTGATCTGGCTCACGG
CAGGCCTGCTCATCGTCATCGCCGGCTGGGTCTCCTGA

Upstream 100 bases:

>100_bases
AAGACGCGGGCAGGCCGCTCGTGATGCCGACCGTCGAACGCTATCGTCCGGCGGGCCAGGCCAATCGCATCGGCACGCTC
ACCCTGGAAATGAATCGCTG

Downstream 100 bases:

>100_bases
ACCCGGGCTTTCATTCATGCTGAACGCGCTGTGGGTCGGCTTCTTTTTCGTCGCCTTTCTGATCGCGCTCGCCAATCTCG
TTTTCCTCGGCAACGCCGAG

Product: CobD/CbiB family protein

Products: ADP; phosphate; Adenosyl cobinamide phosphate; Adenosyl cobinamide

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MVFFSVLAAVALEHLRPLRQPMLHYRHYTRFIHWLEGKLNAGEYTHGAIAWTLAVVPWLVAVWAIFAVLEDVSPVLGWVW
NVAVLYFTLGFKYYSDNAERIAHLLRAGDLDAARAQLGLWRGGDTTHFTSDDITRVTIEQVMAESHRQMFGVLFWFVLLA
PLGPVGAVLFRAASILSRRWEVSRGRFGLCACRVFHIINWVPARLTALTYAIAGNFEDATYCWRTQAAAWPEEEEGVVIA
AGAGAMGVRLGQPVTVGGESVWRPELGTGQAPDPDFIASAVSMIWRGLVIWLTAGLLIVIAGWVS

Sequences:

>Translated_305_residues
MVFFSVLAAVALEHLRPLRQPMLHYRHYTRFIHWLEGKLNAGEYTHGAIAWTLAVVPWLVAVWAIFAVLEDVSPVLGWVW
NVAVLYFTLGFKYYSDNAERIAHLLRAGDLDAARAQLGLWRGGDTTHFTSDDITRVTIEQVMAESHRQMFGVLFWFVLLA
PLGPVGAVLFRAASILSRRWEVSRGRFGLCACRVFHIINWVPARLTALTYAIAGNFEDATYCWRTQAAAWPEEEEGVVIA
AGAGAMGVRLGQPVTVGGESVWRPELGTGQAPDPDFIASAVSMIWRGLVIWLTAGLLIVIAGWVS
>Mature_305_residues
MVFFSVLAAVALEHLRPLRQPMLHYRHYTRFIHWLEGKLNAGEYTHGAIAWTLAVVPWLVAVWAIFAVLEDVSPVLGWVW
NVAVLYFTLGFKYYSDNAERIAHLLRAGDLDAARAQLGLWRGGDTTHFTSDDITRVTIEQVMAESHRQMFGVLFWFVLLA
PLGPVGAVLFRAASILSRRWEVSRGRFGLCACRVFHIINWVPARLTALTYAIAGNFEDATYCWRTQAAAWPEEEEGVVIA
AGAGAMGVRLGQPVTVGGESVWRPELGTGQAPDPDFIASAVSMIWRGLVIWLTAGLLIVIAGWVS

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: 6.3.1.10

Molecular weight: Translated: 33862; Mature: 33862

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCC
>Mature Secondary Structure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HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; adenosylcobyric acid; (R)-1-aminopropan-2-yl phosphate; (R)-1-aminopropan-2-ol

Specific reaction: (1) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-yl phosphate = ADP + phosphate + adenosylcobinamide phosphate; (2) ATP + adenosylcobyric acid + (R)-1-aminopropan-2-ol = ADP + phosphate + adenosylcobinamide

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA