| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317059
Identifier: 74317059
GI number: 74317059
Start: 1103904
End: 1104860
Strand: Reverse
Name: 74317059
Synonym: Tbd_1041
Alternate gene names: NA
Gene position: 1104860-1103904 (Counterclockwise)
Preceding gene: 74317060
Following gene: 74317058
Centisome position: 37.97
GC content: 67.4
Gene sequence:
>957_bases ATGATCGCGCGTCTGTTCATGCTCCTGCTGTGCTTCTGTCCGCTGGCGTACGCGACGCCCGCAGCGGAAAACGCCGAGGT GACGGTAGCGATGGAAGCCGTGCGGCTCGGGCCCCATAGCTACTTCGTGCAGGGGCTAGCAGGCGCAGCGTCGAGCGAGA ACCAGGGTTTCATGTCGAACGCGGGCTTCGTCGTCACCCGCGAAGGCGTCGTCGTGTTCGACGCGCTCGCCTCGCCGCCG CTGGCCGAGAAACTGCTCGCCCTGATCCGCAGCGTGACCGCCCAGCCGGTCAGGCGGGTGATCGTGAGCCACTACCACGC CGATCATTTCTACGGTCTGCAGGTCTTCAAGGCGCAAGGCGCGGAGATCTGGGCGCATCGTCTGGCCGAAGGCGCGACCC GCACCGAGGAGGCGGCGCAGCGCCTGGAACAGCGCAAGGAGGCACTGTTCCCGTGGGTGGACGACACGACACGCCTGCTC GAGGCCGACCGGTTCGTCGACGGCGACATCGACTTCGAACTCGGCGGCGTCCACTTCGCCCTGCGCCACGTCGGACCGGC GCATTCGCGCGAGGACATGGCGCTGCTGGTGAAGGAAGACCGCGTGCTCTATGCGGGCGATCTCGTGTTTCGCGGCCGCG TCCCGTTCGTCGGCGACGCCGACGGCGGTGCGTGGATCGCCGCGCTGGACAAGCTGATCGCGCTCGATCCCGAAATACTC GTCCCCGGCCACGGCGCGCCATCGCGCGCGCCGCGGGCGGACCTCGTCTTCACCCGCGACTATCTCGCCTACCTGCGCGC CCGCATGGGCGAAGCGGCGCGCAATCTCGTTCCGTTCGACGAGGCCTATGCGCAGACCGACTGGTCGAAATACCGCGACC TGCCCGCCTTCGAGGAGGCCAATCGGGTCAATGCCTACAACCAGTACCTGAGGCTCGAACAGGAAAGCGAACCGTGA
Upstream 100 bases:
>100_bases CGGCAATTCGAAGCCTGGGGCGCCGGGCACCCCTGCCCCGACGGCGGGGAAGAGACAGGGCGCGCGCGCCTATAATGGTC CGTTCAACCGAAGGACTCCC
Downstream 100 bases:
>100_bases CGGTCTGACGCAGCCGTCGTTTGTGGAATCCGGCTGGCGTCATCCGACCCGACGCACCGAAAGCTCGGACACCAGCATCA CCGGGACAATTCTGGACGAT
Product: beta lactamase
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Beta-Lactamase-Like; Beta Lactamase; Beta-Lactamase-Like Protein; Beta-Lactamase; Metallo-Beta-Lactamase Superfamily Protein; Cyclase; Metallo-Beta-Lactamase; Metallo-Beta-Lactamase Domain Protein; Hydrolase; Beta-Lactamase Class B; Zn-Dependent Hydrolase; Polyketide Cyclase; Zn-Dependent Hydrolase Glyoxylase; SoxH Protein-Like; Cyclase/Dehydrase; Dehydrase; Metallo-Beta-Lactamase Superfamily; Beta Lactamase SoxH-Like Protein; SoxH Protein -Like Protein; Glyoxylase-Like Zinc-Dependent Hydrolase; Zn-Dependent Hydrolase Or Glyoxylase; Zn-Dependent Hydrolase Family Protein; Zn-Dependent Hydrolase Glyoxylase Family Protein; ActIV Cyclase; Bifunctional HHDD Isomerase/Cyclase/Dehydrase; Beta-Lactamase Domain Containing Protein; Rhodanese Domain Protein
Number of amino acids: Translated: 318; Mature: 318
Protein sequence:
>318_residues MIARLFMLLLCFCPLAYATPAAENAEVTVAMEAVRLGPHSYFVQGLAGAASSENQGFMSNAGFVVTREGVVVFDALASPP LAEKLLALIRSVTAQPVRRVIVSHYHADHFYGLQVFKAQGAEIWAHRLAEGATRTEEAAQRLEQRKEALFPWVDDTTRLL EADRFVDGDIDFELGGVHFALRHVGPAHSREDMALLVKEDRVLYAGDLVFRGRVPFVGDADGGAWIAALDKLIALDPEIL VPGHGAPSRAPRADLVFTRDYLAYLRARMGEAARNLVPFDEAYAQTDWSKYRDLPAFEEANRVNAYNQYLRLEQESEP
Sequences:
>Translated_318_residues MIARLFMLLLCFCPLAYATPAAENAEVTVAMEAVRLGPHSYFVQGLAGAASSENQGFMSNAGFVVTREGVVVFDALASPP LAEKLLALIRSVTAQPVRRVIVSHYHADHFYGLQVFKAQGAEIWAHRLAEGATRTEEAAQRLEQRKEALFPWVDDTTRLL EADRFVDGDIDFELGGVHFALRHVGPAHSREDMALLVKEDRVLYAGDLVFRGRVPFVGDADGGAWIAALDKLIALDPEIL VPGHGAPSRAPRADLVFTRDYLAYLRARMGEAARNLVPFDEAYAQTDWSKYRDLPAFEEANRVNAYNQYLRLEQESEP >Mature_318_residues MIARLFMLLLCFCPLAYATPAAENAEVTVAMEAVRLGPHSYFVQGLAGAASSENQGFMSNAGFVVTREGVVVFDALASPP LAEKLLALIRSVTAQPVRRVIVSHYHADHFYGLQVFKAQGAEIWAHRLAEGATRTEEAAQRLEQRKEALFPWVDDTTRLL EADRFVDGDIDFELGGVHFALRHVGPAHSREDMALLVKEDRVLYAGDLVFRGRVPFVGDADGGAWIAALDKLIALDPEIL VPGHGAPSRAPRADLVFTRDYLAYLRARMGEAARNLVPFDEAYAQTDWSKYRDLPAFEEANRVNAYNQYLRLEQESEP
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35273; Mature: 35273
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIARLFMLLLCFCPLAYATPAAENAEVTVAMEAVRLGPHSYFVQGLAGAASSENQGFMSN CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHCCCCCCCCCCCCC AGFVVTREGVVVFDALASPPLAEKLLALIRSVTAQPVRRVIVSHYHADHFYGLQVFKAQG CCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCC AEIWAHRLAEGATRTEEAAQRLEQRKEALFPWVDDTTRLLEADRFVDGDIDFELGGVHFA HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEECHHHHH LRHVGPAHSREDMALLVKEDRVLYAGDLVFRGRVPFVGDADGGAWIAALDKLIALDPEIL HHHCCCCCCCCCEEEEEECCCEEEECCEEEECCCCEEECCCCCHHHHHHHHHHHCCCCEE VPGHGAPSRAPRADLVFTRDYLAYLRARMGEAARNLVPFDEAYAQTDWSKYRDLPAFEEA ECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHCCCCCHHHH NRVNAYNQYLRLEQESEP HHHHHHHHHHHCCCCCCC >Mature Secondary Structure MIARLFMLLLCFCPLAYATPAAENAEVTVAMEAVRLGPHSYFVQGLAGAASSENQGFMSN CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHCCCCCCCCCCCCC AGFVVTREGVVVFDALASPPLAEKLLALIRSVTAQPVRRVIVSHYHADHFYGLQVFKAQG CCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCC AEIWAHRLAEGATRTEEAAQRLEQRKEALFPWVDDTTRLLEADRFVDGDIDFELGGVHFA HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEECHHHHH LRHVGPAHSREDMALLVKEDRVLYAGDLVFRGRVPFVGDADGGAWIAALDKLIALDPEIL HHHCCCCCCCCCEEEEEECCCEEEECCEEEECCCCEEECCCCCHHHHHHHHHHHCCCCEE VPGHGAPSRAPRADLVFTRDYLAYLRARMGEAARNLVPFDEAYAQTDWSKYRDLPAFEEA ECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHCCCCCHHHH NRVNAYNQYLRLEQESEP HHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA