| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is yceI [C]
Identifier: 74317048
GI number: 74317048
Start: 1095732
End: 1096292
Strand: Direct
Name: yceI [C]
Synonym: Tbd_1030
Alternate gene names: 74317048
Gene position: 1095732-1096292 (Clockwise)
Preceding gene: 74317047
Following gene: 74317049
Centisome position: 37.66
GC content: 67.74
Gene sequence:
>561_bases ATGAGGTCGACACTGAGACTGGCCGCGCTGCTGGCCGCGTTTACCGCGCCCGCGGCGCACGCCGTCGAGTACCGCACTGT GCTGCCGGAAAAGAGCACGCTTGCCTTCGAATTCCGCCAGATGGGCGTTCCGGTTAAAGGCGGCTTCAAGCGCTTCGCCA CTGCGTTGCGCTTCGACCCGGCCAGACCCGAAGCGGGGCAGGCGCGGATCGAGATCGACCTCGCCAGCATCGACGCCGGT TCGCCCGAGGCCGACGAGGAGGCCGCCGGGAAGCTCTGGTTCAACCGCAGCGTCTTTCCGAAGGCGACTTTCGTCTCGCG CGAGGTGCGTGCGCTCGGCGGCAACCGCTACGCCCTGGACGGCACGCTGACGCTCAAGGGCAAAAGCCGCCCGCTGACGG TGCCCGTCACCTATACGCCAGGGCGCGAGGTCGCCACGTTCGACGGCGCCTTCGTCCTCAAGCGCCTCGATTTCGGCATC GGCGAGGGCATGTGGGCCGACGTCTCGGCCGTCGCCAACGAAGTCCGGGTCAAGTTCCGAATTGCCGCCCGCGGCAACTA A
Upstream 100 bases:
>100_bases TGGCTTTGGTCGTCGTCCACGTCGCGGCGGCCCTGCAGCATCACTTCATCGAACGTCACCCGTTCCTGCAGCGCATGGGC TGGGGAAGAAAGGAGTTGTC
Downstream 100 bases:
>100_bases CCGTGCTCATCCACCGAAGGAGATCGAAATGAACCGTCTTGCCACCCTTGCATCAATTCTGTCCGCCGGCTTCGTGCTGT CCGCGCAGGCCGCGCCCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 186; Mature: 186
Protein sequence:
>186_residues MRSTLRLAALLAAFTAPAAHAVEYRTVLPEKSTLAFEFRQMGVPVKGGFKRFATALRFDPARPEAGQARIEIDLASIDAG SPEADEEAAGKLWFNRSVFPKATFVSREVRALGGNRYALDGTLTLKGKSRPLTVPVTYTPGREVATFDGAFVLKRLDFGI GEGMWADVSAVANEVRVKFRIAARGN
Sequences:
>Translated_186_residues MRSTLRLAALLAAFTAPAAHAVEYRTVLPEKSTLAFEFRQMGVPVKGGFKRFATALRFDPARPEAGQARIEIDLASIDAG SPEADEEAAGKLWFNRSVFPKATFVSREVRALGGNRYALDGTLTLKGKSRPLTVPVTYTPGREVATFDGAFVLKRLDFGI GEGMWADVSAVANEVRVKFRIAARGN >Mature_186_residues MRSTLRLAALLAAFTAPAAHAVEYRTVLPEKSTLAFEFRQMGVPVKGGFKRFATALRFDPARPEAGQARIEIDLASIDAG SPEADEEAAGKLWFNRSVFPKATFVSREVRALGGNRYALDGTLTLKGKSRPLTVPVTYTPGREVATFDGAFVLKRLDFGI GEGMWADVSAVANEVRVKFRIAARGN
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0312 family. Type 1 subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007372 [H]
Pfam domain/function: PF04264 YceI [H]
EC number: NA
Molecular weight: Translated: 20190; Mature: 20190
Theoretical pI: Translated: 10.60; Mature: 10.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSTLRLAALLAAFTAPAAHAVEYRTVLPEKSTLAFEFRQMGVPVKGGFKRFATALRFDP CCCHHHHHHHHHHHHCCCHHHEEHEEECCCCCHHEEEHHHCCCCCCCCHHHHHHHHHCCC ARPEAGQARIEIDLASIDAGSPEADEEAAGKLWFNRSVFPKATFVSREVRALGGNRYALD CCCCCCCEEEEEEEEECCCCCCCCCCHHCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEE GTLTLKGKSRPLTVPVTYTPGREVATFDGAFVLKRLDFGIGEGMWADVSAVANEVRVKFR EEEEECCCCCCEEEEEEECCCCCEEEECHHHHHHHHCCCCCCCCCHHHHHHHHEEEEEEE IAARGN EEECCC >Mature Secondary Structure MRSTLRLAALLAAFTAPAAHAVEYRTVLPEKSTLAFEFRQMGVPVKGGFKRFATALRFDP CCCHHHHHHHHHHHHCCCHHHEEHEEECCCCCHHEEEHHHCCCCCCCCHHHHHHHHHCCC ARPEAGQARIEIDLASIDAGSPEADEEAAGKLWFNRSVFPKATFVSREVRALGGNRYALD CCCCCCCEEEEEEEEECCCCCCCCCCHHCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEE GTLTLKGKSRPLTVPVTYTPGREVATFDGAFVLKRLDFGIGEGMWADVSAVANEVRVKFR EEEEECCCCCCEEEEEEECCCCCEEEECHHHHHHHHCCCCCCCCCHHHHHHHHEEEEEEE IAARGN EEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA