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The map label for this gene is ydaL [C]

Identifier: 74317018

GI number: 74317018

Start: 1067464

End: 1068123

Strand: Reverse

Name: ydaL [C]

Synonym: Tbd_1000

Alternate gene names: 74317018

Gene position: 1068123-1067464 (Counterclockwise)

Preceding gene: 74317019

Following gene: 74317017

Centisome position: 36.71

GC content: 72.27

Gene sequence:

>660_bases
ATGAAACGGCGTCGCAGCGCGCTCGCGCCAGCCGCGTTCGACGCGCTGGCGCGCGTGCGCCGCGTCCTGCACGAACAGCC
TGGCCGTCCGGAACAGGCGCCCCAAACCCCGCTTGAGCCGGCGGCGCCCGCCGACGGACGGCTGCTTTTCCGCCGTGCGG
TCGCCGACGTCGTCCCGTTGCCGCCCGCCGGCCGTGCCGAGCCCACTCGCCCGCGCCTCAAGCCGATCGCCCGCCAGCGG
CAGCGCGACGAGCGCCAAGTCCTCGTCGACGCCCTCTCCGACCCGTGGGACTGGGAAGCGGCTGCGTCTACCGGCGAGGA
GCTGTTCTTCGTCCGCCCCGGCGTTCCCTCGGCAGCCCTGCGCAAGCTGCGCCGCGGCGGCTGGGTGATTCGCGCCGAGC
TCGACCTGCACGGTCTGACCGCGGACGAGGCCCGCGTCGCGCTCGCGGCTTTCCTCAACCGCTGCATGATCGAGGACAGG
CGCTGCGTGCGGATCATCCACGGCAAGGGCCTGCGCTCGAAGAACCGCTTGCCGGTTCTGAAAAACAAGGTCCGCCACTG
GCTGACCCAGCGCGACGACGTGCTCGCTTTCTGCCAGGCACGCGCGGTCGACGGCGGCACCGGCGCCGTCCTCGTGCTGC
TCAAATCGTCAACCCGCTAG

Upstream 100 bases:

>100_bases
GACCACATCTACCGCCAGGCCGTCACGAGCGCCGGCACTGGCTGCATGGCGGCACTCGACGCCGAGCGCTATCTCGACGC
GCTGGGCAAGACCAAGTGAG

Downstream 100 bases:

>100_bases
CAAATCGAGAAAGATCGTAATGAACGAACCCGAAATCCAGGACTTCGAACTCCCCACGACCGGCAACACGCCCTTCAAGC
TTTCCGGGCAGCGCGGCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKRRRSALAPAAFDALARVRRVLHEQPGRPEQAPQTPLEPAAPADGRLLFRRAVADVVPLPPAGRAEPTRPRLKPIARQR
QRDERQVLVDALSDPWDWEAAASTGEELFFVRPGVPSAALRKLRRGGWVIRAELDLHGLTADEARVALAAFLNRCMIEDR
RCVRIIHGKGLRSKNRLPVLKNKVRHWLTQRDDVLAFCQARAVDGGTGAVLVLLKSSTR

Sequences:

>Translated_219_residues
MKRRRSALAPAAFDALARVRRVLHEQPGRPEQAPQTPLEPAAPADGRLLFRRAVADVVPLPPAGRAEPTRPRLKPIARQR
QRDERQVLVDALSDPWDWEAAASTGEELFFVRPGVPSAALRKLRRGGWVIRAELDLHGLTADEARVALAAFLNRCMIEDR
RCVRIIHGKGLRSKNRLPVLKNKVRHWLTQRDDVLAFCQARAVDGGTGAVLVLLKSSTR
>Mature_219_residues
MKRRRSALAPAAFDALARVRRVLHEQPGRPEQAPQTPLEPAAPADGRLLFRRAVADVVPLPPAGRAEPTRPRLKPIARQR
QRDERQVLVDALSDPWDWEAAASTGEELFFVRPGVPSAALRKLRRGGWVIRAELDLHGLTADEARVALAAFLNRCMIEDR
RCVRIIHGKGLRSKNRLPVLKNKVRHWLTQRDDVLAFCQARAVDGGTGAVLVLLKSSTR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=177, Percent_Identity=32.2033898305085, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1788671, Length=148, Percent_Identity=32.4324324324324, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 24436; Mature: 24436

Theoretical pI: Translated: 11.82; Mature: 11.82

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRRSALAPAAFDALARVRRVLHEQPGRPEQAPQTPLEPAAPADGRLLFRRAVADVVPL
CCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
PPAGRAEPTRPRLKPIARQRQRDERQVLVDALSDPWDWEAAASTGEELFFVRPGVPSAAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEECCCCCHHHH
RKLRRGGWVIRAELDLHGLTADEARVALAAFLNRCMIEDRRCVRIIHGKGLRSKNRLPVL
HHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCCCCCCCHH
KNKVRHWLTQRDDVLAFCQARAVDGGTGAVLVLLKSSTR
HHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MKRRRSALAPAAFDALARVRRVLHEQPGRPEQAPQTPLEPAAPADGRLLFRRAVADVVPL
CCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
PPAGRAEPTRPRLKPIARQRQRDERQVLVDALSDPWDWEAAASTGEELFFVRPGVPSAAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEECCCCCHHHH
RKLRRGGWVIRAELDLHGLTADEARVALAAFLNRCMIEDRRCVRIIHGKGLRSKNRLPVL
HHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCCCCCCCHH
KNKVRHWLTQRDDVLAFCQARAVDGGTGAVLVLLKSSTR
HHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA