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The map label for this gene is exbD1 [H]

Identifier: 74316930

GI number: 74316930

Start: 968190

End: 968609

Strand: Direct

Name: exbD1 [H]

Synonym: Tbd_0912

Alternate gene names: 74316930

Gene position: 968190-968609 (Clockwise)

Preceding gene: 74316929

Following gene: 74316931

Centisome position: 33.27

GC content: 68.57

Gene sequence:

>420_bases
ATGGCGATGGGAAGCTTCGATCCGCGCCGCCCGCAGACCCCGATTGCCGACATCAACGTGGTGCCCCTGGTCGACGTGAT
GCTGGTACTGCTGGTGATCTTCATCATCACCGCGCCGCTCCTGACCCATTCGGTCAAGGTCGACCTGCCCAAGGCGAGCA
GTGCGCCCAACATCACGCAGCCCGCGCACGTCGAATTCGCGATCCGCGCGAACGGCGAGCTGCGCTGGAACGGCGCACGC
GTCGCGCCGCAGGAGCTGGCCGCACGCTTCGCCACGGAGGCGCGCAAACAGCCGCAGCCCGAGCTGCACATCCGTGCCGA
TCGCCAGGCGCGCTACGAGCGCGTCGCCCAGGTCATGTCCGCGGCCGCCCAGGCCGGTCTCGTGCGCATCGGTTTCGTGA
CCGAGCCGGTCAAACCCTGA

Upstream 100 bases:

>100_bases
CGGCGCGAAAGGCGCCGGTGCGGCCGGCACGGCCGGCGAGGTTCGTCCGCTGCGCAGCGCAGCGCGGCCGCTGCAGCCGA
CAAGCGCGAAGGCCTGAGCC

Downstream 100 bases:

>100_bases
TCCTTCGGAAAGCGGCGTCGGCGCGCGCCGGCTTCCCGTGGCGACCGGCTTTCCGCTCGCAGCCCTCGTGTTCCGTCGTG
TCCGCTTTGGAACATGGCAG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MAMGSFDPRRPQTPIADINVVPLVDVMLVLLVIFIITAPLLTHSVKVDLPKASSAPNITQPAHVEFAIRANGELRWNGAR
VAPQELAARFATEARKQPQPELHIRADRQARYERVAQVMSAAAQAGLVRIGFVTEPVKP

Sequences:

>Translated_139_residues
MAMGSFDPRRPQTPIADINVVPLVDVMLVLLVIFIITAPLLTHSVKVDLPKASSAPNITQPAHVEFAIRANGELRWNGAR
VAPQELAARFATEARKQPQPELHIRADRQARYERVAQVMSAAAQAGLVRIGFVTEPVKP
>Mature_138_residues
AMGSFDPRRPQTPIADINVVPLVDVMLVLLVIFIITAPLLTHSVKVDLPKASSAPNITQPAHVEFAIRANGELRWNGARV
APQELAARFATEARKQPQPELHIRADRQARYERVAQVMSAAAQAGLVRIGFVTEPVKP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=137, Percent_Identity=35.7664233576642, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15220; Mature: 15089

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMGSFDPRRPQTPIADINVVPLVDVMLVLLVIFIITAPLLTHSVKVDLPKASSAPNITQ
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCC
PAHVEFAIRANGELRWNGARVAPQELAARFATEARKQPQPELHIRADRQARYERVAQVMS
CCEEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
AAAQAGLVRIGFVTEPVKP
HHHHCCEEEEEEECCCCCC
>Mature Secondary Structure 
AMGSFDPRRPQTPIADINVVPLVDVMLVLLVIFIITAPLLTHSVKVDLPKASSAPNITQ
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCC
PAHVEFAIRANGELRWNGARVAPQELAARFATEARKQPQPELHIRADRQARYERVAQVMS
CCEEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
AAAQAGLVRIGFVTEPVKP
HHHHCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]