Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74316863

Identifier: 74316863

GI number: 74316863

Start: 895031

End: 895717

Strand: Direct

Name: 74316863

Synonym: Tbd_0845

Alternate gene names: NA

Gene position: 895031-895717 (Clockwise)

Preceding gene: 74316862

Following gene: 74316864

Centisome position: 30.76

GC content: 73.36

Gene sequence:

>687_bases
ATGCGGTCAAGCGCTTCCTCGTCGAACACGCCGGCTGAGCCGCACGGCACGGGCACGGTGCCGCGCGGGCAGTCTGCCGC
CGGCGGCGCCTTCGCCGACCTGCTCGCGCGCGTCGCCGCCTGCACCGCCTGCGCCGAACATCTCCCGCATCCACCGCGCC
CCGTTCTGCGCGCCTCGCCGAGCGCCCGGCTGCTGATCGTCGGGCAGGCGCCGGGCCGGCGCGTGCACGCCACCGGCATT
CCCTGGAACGATCCGTCGGGCGACCGCCTGCGCGACTGGCTGGGCCTGACGCGCGACGCGTTCTACGATGCGTCGCGCAT
CGCGATCGTCCCTGCGGGCCTGTGCTATCCCGGCACCGTCGGCGGCAGCGACCTGCCGCCGCGCGCCGAGTGCGCGTCGC
GCTGGCAGCCGCCGCTGCGCGCCGCGATGCCGAAGATCGGCCTCACGCTCCTGATCGGCGCCTACGCGCAGGCCTACTAC
CTCGGCCGGCAACGCCGCACGACGCTCACCGAAACCGTCGAAGCCTGGCGCGACCTCGATCCCGCGCTTTTTCCGCTGCC
GCATCCGAGCCCGCGCAATCGTCGCTGGTTCAAGCAACACCCGTGGTTCGACGCCGAGGTCGTCCCGGCCCTGCGCGCGC
GGGTTGGAGCGCTGCTGGGCACAGGCGATAATGAGCCGGACCAATAA

Upstream 100 bases:

>100_bases
GCGATTCGCGAAGCGCTCGGCATCGACCCGGTCCGTCCGGCCGAGCTCGCCGACCTCGAAACCCAGCCGCAGAAGAAGCA
CGTCATGGACGCCGACGTCG

Downstream 100 bases:

>100_bases
TCGGCGCCGTCGGAGCGCCTCCAGGGAAACTGCATGAAACTCATCACTTCGCTCACGAGCCCCTACGGCCGCAAGGTTCG
CGTCGTCCTCGCCGAAAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MRSSASSSNTPAEPHGTGTVPRGQSAAGGAFADLLARVAACTACAEHLPHPPRPVLRASPSARLLIVGQAPGRRVHATGI
PWNDPSGDRLRDWLGLTRDAFYDASRIAIVPAGLCYPGTVGGSDLPPRAECASRWQPPLRAAMPKIGLTLLIGAYAQAYY
LGRQRRTTLTETVEAWRDLDPALFPLPHPSPRNRRWFKQHPWFDAEVVPALRARVGALLGTGDNEPDQ

Sequences:

>Translated_228_residues
MRSSASSSNTPAEPHGTGTVPRGQSAAGGAFADLLARVAACTACAEHLPHPPRPVLRASPSARLLIVGQAPGRRVHATGI
PWNDPSGDRLRDWLGLTRDAFYDASRIAIVPAGLCYPGTVGGSDLPPRAECASRWQPPLRAAMPKIGLTLLIGAYAQAYY
LGRQRRTTLTETVEAWRDLDPALFPLPHPSPRNRRWFKQHPWFDAEVVPALRARVGALLGTGDNEPDQ
>Mature_228_residues
MRSSASSSNTPAEPHGTGTVPRGQSAAGGAFADLLARVAACTACAEHLPHPPRPVLRASPSARLLIVGQAPGRRVHATGI
PWNDPSGDRLRDWLGLTRDAFYDASRIAIVPAGLCYPGTVGGSDLPPRAECASRWQPPLRAAMPKIGLTLLIGAYAQAYY
LGRQRRTTLTETVEAWRDLDPALFPLPHPSPRNRRWFKQHPWFDAEVVPALRARVGALLGTGDNEPDQ

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005122 [H]

Pfam domain/function: PF03167 UDG [H]

EC number: NA

Molecular weight: Translated: 24587; Mature: 24587

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSASSSNTPAEPHGTGTVPRGQSAAGGAFADLLARVAACTACAEHLPHPPRPVLRASP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCC
SARLLIVGQAPGRRVHATGIPWNDPSGDRLRDWLGLTRDAFYDASRIAIVPAGLCYPGTV
CCEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
GGSDLPPRAECASRWQPPLRAAMPKIGLTLLIGAYAQAYYLGRQRRTTLTETVEAWRDLD
CCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
PALFPLPHPSPRNRRWFKQHPWFDAEVVPALRARVGALLGTGDNEPDQ
CCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRSSASSSNTPAEPHGTGTVPRGQSAAGGAFADLLARVAACTACAEHLPHPPRPVLRASP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCC
SARLLIVGQAPGRRVHATGIPWNDPSGDRLRDWLGLTRDAFYDASRIAIVPAGLCYPGTV
CCEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
GGSDLPPRAECASRWQPPLRAAMPKIGLTLLIGAYAQAYYLGRQRRTTLTETVEAWRDLD
CCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
PALFPLPHPSPRNRRWFKQHPWFDAEVVPALRARVGALLGTGDNEPDQ
CCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]