Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is ywbL [H]

Identifier: 74316741

GI number: 74316741

Start: 765834

End: 767807

Strand: Reverse

Name: ywbL [H]

Synonym: Tbd_0723

Alternate gene names: 74316741

Gene position: 767807-765834 (Counterclockwise)

Preceding gene: 74316742

Following gene: 74316740

Centisome position: 26.39

GC content: 70.87

Gene sequence:

>1974_bases
ATGAATCAACGCACCTTCCAGGCGGCCTTCCACGCGGTGGGCTGGGTCGCCGCGCTCCTCGTGCTCGTCGCGCTGAGCCT
GCCGGCCCGCGCCGCCTCGGCCGACCCTGGGCGCACGGCCCAGACCATTGCGCACATGCTCGACTACGTCGGCGTCGACT
ACCCGGAATTCGTGCGCGACGGCAAGGTGCTCGACGCGGCCGAATATCAGGAGCAGTCGGAGTTTTCCGTCCAGGTCATC
GAACAGTTGCGCAAGCTGCCGGACAATCCCGCCAAGGCGGGGTTGCTGCGACAGGCCGAAACGCTCAACGCGCGCATCGC
CGCCCGTGCGCCCGGCGACGAGGTGTCCCGTCTCGCCGGCGAATTGAGGCAGGGCGTCATCGCCGCGTATCGCATCGCCG
TCGCGCCCAAGCGCGCACCCGACCTGCGCGGCGCCGCCCGGCTGTATGCCGCGCAGTGCGCCGCCTGTCACGGTGCGGAA
GGCAAGGGCGACGGCGTCCAGGCGGGCGGCATGGAGCCGGCGCCGGCCGACTTCCACGACGCGGCGCGCATGCGGCAACG
CAGCGTGTACGGCCTTTTCAGCACGATCAGTCTCGGCGTAAGCGGCACCGCGATGGGTGGATTCGACCAGCTGTCCGAGG
CGGAGCGCTGGGCACTCGCGTTCTACGTCTCCTCGCTCGGGACGCCGGCCGAGGTTGCCCAGCAAGGCGCGGCGCGATTC
GCCGCCGGCGGCAGCGACCTGCCCTTCGCCAACCTGAAAACGCTCGTGATGACGACCGAGAACGAAGTCCGCGCGCGCGA
CGGCGACGCCGCCGCCGCGGTCTTCGCCTGGCTCCGGCAAAACCCGGTCGAAGCGAAGGCGACGGCCGAGCCGCCGCTCG
CCTTCGCCGGCCGCCATGTCGACGAGAGCCTCGCCGCCTACCGCTCGGGCGACGTCGCGCTGGCCCAGCGGCTCGCCGTG
ACGGGCTATCTCGAAGGCTTCGAGCTCGTCGAGGCCAGTCTCGACGCCTCCGACCGCGCACTGCGGCAGGAAATCGAAAC
CCAGATGACGGCCTACCGCAATCTGCTGCGCGCCGGCGCACCCGTCGCCGATGCGGAAAAACAGGCCGCGCTGCTGCACG
CGCTGCTCGCCCGTGCGGGCGACACACTCGACGCCGGCGGGCTGTCGCCGTTCGCCGCCCTGCTCGGTGCCTTCTTCATC
CTCGTGCGTGAAGGCCTCGAAGCACTGCTCGTGGTCGCGGCGGTCGTCGCCTTCCTGGTCAAGGCCGAACGCCGCGAGGC
GCTGCGCTACGTCCATGTCGGCTGGATCGGCGCGCTGGGCCTGGGCGTGCTGACCTGGTTCGTCGCGAGCTACGTCATCG
CGATCAGCGGCGCCGGGCGCGAGGTCACGGAAGGGATCACCGCGCTCGCCGCGAGCGCGATCCTGCTCTACGTCGGCTTC
TGGCTGCACGACAAGTCCCACGCCGACCGCTGGAAGGCCTTCGTCGGCCGCCACCTGACGCACGCCTTGTCGCGCGGCAC
GCTGTGGGCGCTCGCCGGCGTCTCCTTCCTGGCGGTCTACCGCGAAGCCTTCGAGACGGTGCTGTTCTATCAGGCGCTCT
GGCAGCAGGCCGAAGGCGCGCGGAGTTCGGTGCTGGCGGGCGCCGGCCTCGGCGCCGCAACGCTCGCCGTGCTCGGCTGG
ATGATCTTCCGCTTCGGCCTGCGCCTGCCGATCGGCCCCTTCTTCGCCGCGAGCTCGGCGCTGCTCGCGCTGCTCGCGGT
CATGTTCGCCGGCCACGGCGTCGCCGCGCTGCAGGAAGCGGGCTGGCTGCCGCTCGATCCTGTCAATTTCATAGAGGTCC
CGCTTCTCGGCATTTACGCCAACGTACAGGCCTTGTCGCTGCAGGGCGGCCTGATTGCAGTGATCCTCGTCGGCTTTGCC
TGGGGCCACGCCCGGCGCGGGCTTGCGCTCGCCAGCGGCGACGCACTCCGCTGA

Upstream 100 bases:

>100_bases
GTTCTGGCGTGGCGGACTGCCCGCGGTTTGAGGGGGCTTGCCGAAGGCGTCCGGCGTCCGCGGCGTTCCTTCTCCAAAAT
GAAATCGTGAGCACGCAATC

Downstream 100 bases:

>100_bases
TGCACGTTCGCAAGGCGCACGCAATGAATTTCGCCCGCAGGCCCTTCGCGGCCGCCGGGCCCGCCCACCCTATCGAGTAG
AACCGCTACCACCCAGCCAG

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 657; Mature: 657

Protein sequence:

>657_residues
MNQRTFQAAFHAVGWVAALLVLVALSLPARAASADPGRTAQTIAHMLDYVGVDYPEFVRDGKVLDAAEYQEQSEFSVQVI
EQLRKLPDNPAKAGLLRQAETLNARIAARAPGDEVSRLAGELRQGVIAAYRIAVAPKRAPDLRGAARLYAAQCAACHGAE
GKGDGVQAGGMEPAPADFHDAARMRQRSVYGLFSTISLGVSGTAMGGFDQLSEAERWALAFYVSSLGTPAEVAQQGAARF
AAGGSDLPFANLKTLVMTTENEVRARDGDAAAAVFAWLRQNPVEAKATAEPPLAFAGRHVDESLAAYRSGDVALAQRLAV
TGYLEGFELVEASLDASDRALRQEIETQMTAYRNLLRAGAPVADAEKQAALLHALLARAGDTLDAGGLSPFAALLGAFFI
LVREGLEALLVVAAVVAFLVKAERREALRYVHVGWIGALGLGVLTWFVASYVIAISGAGREVTEGITALAASAILLYVGF
WLHDKSHADRWKAFVGRHLTHALSRGTLWALAGVSFLAVYREAFETVLFYQALWQQAEGARSSVLAGAGLGAATLAVLGW
MIFRFGLRLPIGPFFAASSALLALLAVMFAGHGVAALQEAGWLPLDPVNFIEVPLLGIYANVQALSLQGGLIAVILVGFA
WGHARRGLALASGDALR

Sequences:

>Translated_657_residues
MNQRTFQAAFHAVGWVAALLVLVALSLPARAASADPGRTAQTIAHMLDYVGVDYPEFVRDGKVLDAAEYQEQSEFSVQVI
EQLRKLPDNPAKAGLLRQAETLNARIAARAPGDEVSRLAGELRQGVIAAYRIAVAPKRAPDLRGAARLYAAQCAACHGAE
GKGDGVQAGGMEPAPADFHDAARMRQRSVYGLFSTISLGVSGTAMGGFDQLSEAERWALAFYVSSLGTPAEVAQQGAARF
AAGGSDLPFANLKTLVMTTENEVRARDGDAAAAVFAWLRQNPVEAKATAEPPLAFAGRHVDESLAAYRSGDVALAQRLAV
TGYLEGFELVEASLDASDRALRQEIETQMTAYRNLLRAGAPVADAEKQAALLHALLARAGDTLDAGGLSPFAALLGAFFI
LVREGLEALLVVAAVVAFLVKAERREALRYVHVGWIGALGLGVLTWFVASYVIAISGAGREVTEGITALAASAILLYVGF
WLHDKSHADRWKAFVGRHLTHALSRGTLWALAGVSFLAVYREAFETVLFYQALWQQAEGARSSVLAGAGLGAATLAVLGW
MIFRFGLRLPIGPFFAASSALLALLAVMFAGHGVAALQEAGWLPLDPVNFIEVPLLGIYANVQALSLQGGLIAVILVGFA
WGHARRGLALASGDALR
>Mature_657_residues
MNQRTFQAAFHAVGWVAALLVLVALSLPARAASADPGRTAQTIAHMLDYVGVDYPEFVRDGKVLDAAEYQEQSEFSVQVI
EQLRKLPDNPAKAGLLRQAETLNARIAARAPGDEVSRLAGELRQGVIAAYRIAVAPKRAPDLRGAARLYAAQCAACHGAE
GKGDGVQAGGMEPAPADFHDAARMRQRSVYGLFSTISLGVSGTAMGGFDQLSEAERWALAFYVSSLGTPAEVAQQGAARF
AAGGSDLPFANLKTLVMTTENEVRARDGDAAAAVFAWLRQNPVEAKATAEPPLAFAGRHVDESLAAYRSGDVALAQRLAV
TGYLEGFELVEASLDASDRALRQEIETQMTAYRNLLRAGAPVADAEKQAALLHALLARAGDTLDAGGLSPFAALLGAFFI
LVREGLEALLVVAAVVAFLVKAERREALRYVHVGWIGALGLGVLTWFVASYVIAISGAGREVTEGITALAASAILLYVGF
WLHDKSHADRWKAFVGRHLTHALSRGTLWALAGVSFLAVYREAFETVLFYQALWQQAEGARSSVLAGAGLGAATLAVLGW
MIFRFGLRLPIGPFFAASSALLALLAVMFAGHGVAALQEAGWLPLDPVNFIEVPLLGIYANVQALSLQGGLIAVILVGFA
WGHARRGLALASGDALR

Specific function: Unknown

COG id: COG0672

COG function: function code P; High-affinity Fe2+/Pb2+ permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oxidase-dependent Fe transporter (OFeT) (TC 9.A.10.1) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005217
- InterPro:   IPR004923 [H]

Pfam domain/function: PF03239 FTR1 [H]

EC number: NA

Molecular weight: Translated: 69516; Mature: 69516

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQRTFQAAFHAVGWVAALLVLVALSLPARAASADPGRTAQTIAHMLDYVGVDYPEFVRD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCC
GKVLDAAEYQEQSEFSVQVIEQLRKLPDNPAKAGLLRQAETLNARIAARAPGDEVSRLAG
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHH
ELRQGVIAAYRIAVAPKRAPDLRGAARLYAAQCAACHGAEGKGDGVQAGGMEPAPADFHD
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH
AARMRQRSVYGLFSTISLGVSGTAMGGFDQLSEAERWALAFYVSSLGTPAEVAQQGAARF
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AAGGSDLPFANLKTLVMTTENEVRARDGDAAAAVFAWLRQNPVEAKATAEPPLAFAGRHV
CCCCCCCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCH
DESLAAYRSGDVALAQRLAVTGYLEGFELVEASLDASDRALRQEIETQMTAYRNLLRAGA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
PVADAEKQAALLHALLARAGDTLDAGGLSPFAALLGAFFILVREGLEALLVVAAVVAFLV
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAERREALRYVHVGWIGALGLGVLTWFVASYVIAISGAGREVTEGITALAASAILLYVGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
WLHDKSHADRWKAFVGRHLTHALSRGTLWALAGVSFLAVYREAFETVLFYQALWQQAEGA
HHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
RSSVLAGAGLGAATLAVLGWMIFRFGLRLPIGPFFAASSALLALLAVMFAGHGVAALQEA
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC
GWLPLDPVNFIEVPLLGIYANVQALSLQGGLIAVILVGFAWGHARRGLALASGDALR
CCCCCCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCEECCCCCCC
>Mature Secondary Structure
MNQRTFQAAFHAVGWVAALLVLVALSLPARAASADPGRTAQTIAHMLDYVGVDYPEFVRD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCC
GKVLDAAEYQEQSEFSVQVIEQLRKLPDNPAKAGLLRQAETLNARIAARAPGDEVSRLAG
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHH
ELRQGVIAAYRIAVAPKRAPDLRGAARLYAAQCAACHGAEGKGDGVQAGGMEPAPADFHD
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH
AARMRQRSVYGLFSTISLGVSGTAMGGFDQLSEAERWALAFYVSSLGTPAEVAQQGAARF
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AAGGSDLPFANLKTLVMTTENEVRARDGDAAAAVFAWLRQNPVEAKATAEPPLAFAGRHV
CCCCCCCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCH
DESLAAYRSGDVALAQRLAVTGYLEGFELVEASLDASDRALRQEIETQMTAYRNLLRAGA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
PVADAEKQAALLHALLARAGDTLDAGGLSPFAALLGAFFILVREGLEALLVVAAVVAFLV
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAERREALRYVHVGWIGALGLGVLTWFVASYVIAISGAGREVTEGITALAASAILLYVGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
WLHDKSHADRWKAFVGRHLTHALSRGTLWALAGVSFLAVYREAFETVLFYQALWQQAEGA
HHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
RSSVLAGAGLGAATLAVLGWMIFRFGLRLPIGPFFAASSALLALLAVMFAGHGVAALQEA
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC
GWLPLDPVNFIEVPLLGIYANVQALSLQGGLIAVILVGFAWGHARRGLALASGDALR
CCCCCCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]