| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is ywbL [H]
Identifier: 74316741
GI number: 74316741
Start: 765834
End: 767807
Strand: Reverse
Name: ywbL [H]
Synonym: Tbd_0723
Alternate gene names: 74316741
Gene position: 767807-765834 (Counterclockwise)
Preceding gene: 74316742
Following gene: 74316740
Centisome position: 26.39
GC content: 70.87
Gene sequence:
>1974_bases ATGAATCAACGCACCTTCCAGGCGGCCTTCCACGCGGTGGGCTGGGTCGCCGCGCTCCTCGTGCTCGTCGCGCTGAGCCT GCCGGCCCGCGCCGCCTCGGCCGACCCTGGGCGCACGGCCCAGACCATTGCGCACATGCTCGACTACGTCGGCGTCGACT ACCCGGAATTCGTGCGCGACGGCAAGGTGCTCGACGCGGCCGAATATCAGGAGCAGTCGGAGTTTTCCGTCCAGGTCATC GAACAGTTGCGCAAGCTGCCGGACAATCCCGCCAAGGCGGGGTTGCTGCGACAGGCCGAAACGCTCAACGCGCGCATCGC CGCCCGTGCGCCCGGCGACGAGGTGTCCCGTCTCGCCGGCGAATTGAGGCAGGGCGTCATCGCCGCGTATCGCATCGCCG TCGCGCCCAAGCGCGCACCCGACCTGCGCGGCGCCGCCCGGCTGTATGCCGCGCAGTGCGCCGCCTGTCACGGTGCGGAA GGCAAGGGCGACGGCGTCCAGGCGGGCGGCATGGAGCCGGCGCCGGCCGACTTCCACGACGCGGCGCGCATGCGGCAACG CAGCGTGTACGGCCTTTTCAGCACGATCAGTCTCGGCGTAAGCGGCACCGCGATGGGTGGATTCGACCAGCTGTCCGAGG CGGAGCGCTGGGCACTCGCGTTCTACGTCTCCTCGCTCGGGACGCCGGCCGAGGTTGCCCAGCAAGGCGCGGCGCGATTC GCCGCCGGCGGCAGCGACCTGCCCTTCGCCAACCTGAAAACGCTCGTGATGACGACCGAGAACGAAGTCCGCGCGCGCGA CGGCGACGCCGCCGCCGCGGTCTTCGCCTGGCTCCGGCAAAACCCGGTCGAAGCGAAGGCGACGGCCGAGCCGCCGCTCG CCTTCGCCGGCCGCCATGTCGACGAGAGCCTCGCCGCCTACCGCTCGGGCGACGTCGCGCTGGCCCAGCGGCTCGCCGTG ACGGGCTATCTCGAAGGCTTCGAGCTCGTCGAGGCCAGTCTCGACGCCTCCGACCGCGCACTGCGGCAGGAAATCGAAAC CCAGATGACGGCCTACCGCAATCTGCTGCGCGCCGGCGCACCCGTCGCCGATGCGGAAAAACAGGCCGCGCTGCTGCACG CGCTGCTCGCCCGTGCGGGCGACACACTCGACGCCGGCGGGCTGTCGCCGTTCGCCGCCCTGCTCGGTGCCTTCTTCATC CTCGTGCGTGAAGGCCTCGAAGCACTGCTCGTGGTCGCGGCGGTCGTCGCCTTCCTGGTCAAGGCCGAACGCCGCGAGGC GCTGCGCTACGTCCATGTCGGCTGGATCGGCGCGCTGGGCCTGGGCGTGCTGACCTGGTTCGTCGCGAGCTACGTCATCG CGATCAGCGGCGCCGGGCGCGAGGTCACGGAAGGGATCACCGCGCTCGCCGCGAGCGCGATCCTGCTCTACGTCGGCTTC TGGCTGCACGACAAGTCCCACGCCGACCGCTGGAAGGCCTTCGTCGGCCGCCACCTGACGCACGCCTTGTCGCGCGGCAC GCTGTGGGCGCTCGCCGGCGTCTCCTTCCTGGCGGTCTACCGCGAAGCCTTCGAGACGGTGCTGTTCTATCAGGCGCTCT GGCAGCAGGCCGAAGGCGCGCGGAGTTCGGTGCTGGCGGGCGCCGGCCTCGGCGCCGCAACGCTCGCCGTGCTCGGCTGG ATGATCTTCCGCTTCGGCCTGCGCCTGCCGATCGGCCCCTTCTTCGCCGCGAGCTCGGCGCTGCTCGCGCTGCTCGCGGT CATGTTCGCCGGCCACGGCGTCGCCGCGCTGCAGGAAGCGGGCTGGCTGCCGCTCGATCCTGTCAATTTCATAGAGGTCC CGCTTCTCGGCATTTACGCCAACGTACAGGCCTTGTCGCTGCAGGGCGGCCTGATTGCAGTGATCCTCGTCGGCTTTGCC TGGGGCCACGCCCGGCGCGGGCTTGCGCTCGCCAGCGGCGACGCACTCCGCTGA
Upstream 100 bases:
>100_bases GTTCTGGCGTGGCGGACTGCCCGCGGTTTGAGGGGGCTTGCCGAAGGCGTCCGGCGTCCGCGGCGTTCCTTCTCCAAAAT GAAATCGTGAGCACGCAATC
Downstream 100 bases:
>100_bases TGCACGTTCGCAAGGCGCACGCAATGAATTTCGCCCGCAGGCCCTTCGCGGCCGCCGGGCCCGCCCACCCTATCGAGTAG AACCGCTACCACCCAGCCAG
Product: cytochrome c, class I
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 657; Mature: 657
Protein sequence:
>657_residues MNQRTFQAAFHAVGWVAALLVLVALSLPARAASADPGRTAQTIAHMLDYVGVDYPEFVRDGKVLDAAEYQEQSEFSVQVI EQLRKLPDNPAKAGLLRQAETLNARIAARAPGDEVSRLAGELRQGVIAAYRIAVAPKRAPDLRGAARLYAAQCAACHGAE GKGDGVQAGGMEPAPADFHDAARMRQRSVYGLFSTISLGVSGTAMGGFDQLSEAERWALAFYVSSLGTPAEVAQQGAARF AAGGSDLPFANLKTLVMTTENEVRARDGDAAAAVFAWLRQNPVEAKATAEPPLAFAGRHVDESLAAYRSGDVALAQRLAV TGYLEGFELVEASLDASDRALRQEIETQMTAYRNLLRAGAPVADAEKQAALLHALLARAGDTLDAGGLSPFAALLGAFFI LVREGLEALLVVAAVVAFLVKAERREALRYVHVGWIGALGLGVLTWFVASYVIAISGAGREVTEGITALAASAILLYVGF WLHDKSHADRWKAFVGRHLTHALSRGTLWALAGVSFLAVYREAFETVLFYQALWQQAEGARSSVLAGAGLGAATLAVLGW MIFRFGLRLPIGPFFAASSALLALLAVMFAGHGVAALQEAGWLPLDPVNFIEVPLLGIYANVQALSLQGGLIAVILVGFA WGHARRGLALASGDALR
Sequences:
>Translated_657_residues MNQRTFQAAFHAVGWVAALLVLVALSLPARAASADPGRTAQTIAHMLDYVGVDYPEFVRDGKVLDAAEYQEQSEFSVQVI EQLRKLPDNPAKAGLLRQAETLNARIAARAPGDEVSRLAGELRQGVIAAYRIAVAPKRAPDLRGAARLYAAQCAACHGAE GKGDGVQAGGMEPAPADFHDAARMRQRSVYGLFSTISLGVSGTAMGGFDQLSEAERWALAFYVSSLGTPAEVAQQGAARF AAGGSDLPFANLKTLVMTTENEVRARDGDAAAAVFAWLRQNPVEAKATAEPPLAFAGRHVDESLAAYRSGDVALAQRLAV TGYLEGFELVEASLDASDRALRQEIETQMTAYRNLLRAGAPVADAEKQAALLHALLARAGDTLDAGGLSPFAALLGAFFI LVREGLEALLVVAAVVAFLVKAERREALRYVHVGWIGALGLGVLTWFVASYVIAISGAGREVTEGITALAASAILLYVGF WLHDKSHADRWKAFVGRHLTHALSRGTLWALAGVSFLAVYREAFETVLFYQALWQQAEGARSSVLAGAGLGAATLAVLGW MIFRFGLRLPIGPFFAASSALLALLAVMFAGHGVAALQEAGWLPLDPVNFIEVPLLGIYANVQALSLQGGLIAVILVGFA WGHARRGLALASGDALR >Mature_657_residues MNQRTFQAAFHAVGWVAALLVLVALSLPARAASADPGRTAQTIAHMLDYVGVDYPEFVRDGKVLDAAEYQEQSEFSVQVI EQLRKLPDNPAKAGLLRQAETLNARIAARAPGDEVSRLAGELRQGVIAAYRIAVAPKRAPDLRGAARLYAAQCAACHGAE GKGDGVQAGGMEPAPADFHDAARMRQRSVYGLFSTISLGVSGTAMGGFDQLSEAERWALAFYVSSLGTPAEVAQQGAARF AAGGSDLPFANLKTLVMTTENEVRARDGDAAAAVFAWLRQNPVEAKATAEPPLAFAGRHVDESLAAYRSGDVALAQRLAV TGYLEGFELVEASLDASDRALRQEIETQMTAYRNLLRAGAPVADAEKQAALLHALLARAGDTLDAGGLSPFAALLGAFFI LVREGLEALLVVAAVVAFLVKAERREALRYVHVGWIGALGLGVLTWFVASYVIAISGAGREVTEGITALAASAILLYVGF WLHDKSHADRWKAFVGRHLTHALSRGTLWALAGVSFLAVYREAFETVLFYQALWQQAEGARSSVLAGAGLGAATLAVLGW MIFRFGLRLPIGPFFAASSALLALLAVMFAGHGVAALQEAGWLPLDPVNFIEVPLLGIYANVQALSLQGGLIAVILVGFA WGHARRGLALASGDALR
Specific function: Unknown
COG id: COG0672
COG function: function code P; High-affinity Fe2+/Pb2+ permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oxidase-dependent Fe transporter (OFeT) (TC 9.A.10.1) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005217 - InterPro: IPR004923 [H]
Pfam domain/function: PF03239 FTR1 [H]
EC number: NA
Molecular weight: Translated: 69516; Mature: 69516
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQRTFQAAFHAVGWVAALLVLVALSLPARAASADPGRTAQTIAHMLDYVGVDYPEFVRD CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCC GKVLDAAEYQEQSEFSVQVIEQLRKLPDNPAKAGLLRQAETLNARIAARAPGDEVSRLAG CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHH ELRQGVIAAYRIAVAPKRAPDLRGAARLYAAQCAACHGAEGKGDGVQAGGMEPAPADFHD HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH AARMRQRSVYGLFSTISLGVSGTAMGGFDQLSEAERWALAFYVSSLGTPAEVAQQGAARF HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH AAGGSDLPFANLKTLVMTTENEVRARDGDAAAAVFAWLRQNPVEAKATAEPPLAFAGRHV CCCCCCCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCH DESLAAYRSGDVALAQRLAVTGYLEGFELVEASLDASDRALRQEIETQMTAYRNLLRAGA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC PVADAEKQAALLHALLARAGDTLDAGGLSPFAALLGAFFILVREGLEALLVVAAVVAFLV CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KAERREALRYVHVGWIGALGLGVLTWFVASYVIAISGAGREVTEGITALAASAILLYVGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH WLHDKSHADRWKAFVGRHLTHALSRGTLWALAGVSFLAVYREAFETVLFYQALWQQAEGA HHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH RSSVLAGAGLGAATLAVLGWMIFRFGLRLPIGPFFAASSALLALLAVMFAGHGVAALQEA HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC GWLPLDPVNFIEVPLLGIYANVQALSLQGGLIAVILVGFAWGHARRGLALASGDALR CCCCCCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCEECCCCCCC >Mature Secondary Structure MNQRTFQAAFHAVGWVAALLVLVALSLPARAASADPGRTAQTIAHMLDYVGVDYPEFVRD CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCC GKVLDAAEYQEQSEFSVQVIEQLRKLPDNPAKAGLLRQAETLNARIAARAPGDEVSRLAG CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHH ELRQGVIAAYRIAVAPKRAPDLRGAARLYAAQCAACHGAEGKGDGVQAGGMEPAPADFHD HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH AARMRQRSVYGLFSTISLGVSGTAMGGFDQLSEAERWALAFYVSSLGTPAEVAQQGAARF HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH AAGGSDLPFANLKTLVMTTENEVRARDGDAAAAVFAWLRQNPVEAKATAEPPLAFAGRHV CCCCCCCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCH DESLAAYRSGDVALAQRLAVTGYLEGFELVEASLDASDRALRQEIETQMTAYRNLLRAGA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC PVADAEKQAALLHALLARAGDTLDAGGLSPFAALLGAFFILVREGLEALLVVAAVVAFLV CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KAERREALRYVHVGWIGALGLGVLTWFVASYVIAISGAGREVTEGITALAASAILLYVGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH WLHDKSHADRWKAFVGRHLTHALSRGTLWALAGVSFLAVYREAFETVLFYQALWQQAEGA HHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH RSSVLAGAGLGAATLAVLGWMIFRFGLRLPIGPFFAASSALLALLAVMFAGHGVAALQEA HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC GWLPLDPVNFIEVPLLGIYANVQALSLQGGLIAVILVGFAWGHARRGLALASGDALR CCCCCCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377 [H]