| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is rhbC [H]
Identifier: 74316736
GI number: 74316736
Start: 757508
End: 759349
Strand: Reverse
Name: rhbC [H]
Synonym: Tbd_0718
Alternate gene names: 74316736
Gene position: 759349-757508 (Counterclockwise)
Preceding gene: 74316737
Following gene: 74316735
Centisome position: 26.1
GC content: 69.11
Gene sequence:
>1842_bases ATGCACTCACACCATCTCGCAAGTGCGATCGACGCCGCGACGCTGGCGCAGCAGGAAGCCGGCCGCCGCAGCATGGAAAC GCTGCTCAACTGCTATTGCCGCGAGGTCGCGGCGCCCGAGGGCCAGCTCAGCGTCGGTCCGCTGTTCGGCCAGAGCGACA GCCCGGCAGCGGTACACCTCGCCCTGCGCGGCAGCGGCGGACGCGCGCTGCATCTGCGCCTGCCGCTGACCGGCGAGCGC GTGCTGACCGTGGTCGACGACGCCTGCGCCACCGGCAACTACCGCTACCGCTCGCCGATGTATTGCAAGGCACCCGGCCG TCCCTGGGCGCTGCTCGACTGGCAGGCGCTCGCCGGCCGCCTGCTGCGCGAGCTCGCGCTCAAACACGAACAGCCGGCGA ACGACGAGCTCATGCAGCAGATCGCCGACAGCGTCGCCGTCACCGCGAGCGTGCTGAACCACGCGCGCCGGGAGCGGTTT TCGTCCGAGCCGCTGCAGGCCTTCGTCGAATCCGAGCAGTCGCTGATGTTCGGCCACCCCTTCCACCCCGCACCGAAAAG CCGGCAGGGCCTGTCGGGCGAGGACATGCGGCGCTATTCGCCGGAAACGGGGGCGCGCTTCGCGCTGCATTATTTCGCCG TGCGCCGCGAACATCTGCTGCAGCAGTCGGTGCTCGCCGAGCCCTGCGACCGCGTCGTCGCGGCGCACGCGCCGGACGGA ATCGCCGCCGACGACGACTTCTTTCTCCTGCCGGTCCATCCCTGGCAGGCGCGCCATCTGCTCGACCAGCCCGCCGTGGC GACGGCGCTCGCGGGCGACCGCATGCGCGACCTCGGCCCGCAGGGCGCGGATTTCTACCCGACCTCGTCGATCCGCACGC TGTTCCATCCCGACACCCCCTATTTCTACAAGTGCTCGCTCAACGTGCGCATCACCAACTGCGTGCGCAAGAACGCGATC TACGAGCTCGAAGGGGCGCTGCAGGTCACGCGCGTCCTGCGCGGTCTCGGGCCGCAGCTGCGTGCGCGCTTCCCGAACCT CGCGGTCATGGAGGAGCCGGCCTTCCTCTCGGCCGACATGAAGACCGGCGACGCCCGCGCCGACAAAATGATCACCGAAG GCTTCGGCCTGATCCTGCGACATGGCTTCGCCGGCCTGCTGCAGCCCGGCGTCACGCCGCTGCTGGCCGGCGCGCTGTTC GGCAACCACGTCTACGGCGAAGCACGGCTCGCCGAACTGCTCGACGCGCTGCCGCGCCACGCAGGCACCTCGCGCGAGGA CGCTGCCGAGTCCTGGTTCTCGCGCTACGTCGGCGAACTCATGCACCCGGTGCTGTACTGCTATTTCGCGCACGGCGTGA TCTTCGAGCCGCACCTGCAGAACGTCGTGATCGGCGTCGCCGCCGGCGAGGTGCGTCAGGTCTTCCTGCGCGACTTCGAA GGCGTGAAGCTGGTGCAGGAACGCTTCGGCGCCGAGCGATTGGACGCGATCAGCGCGCGTGCCCGCGAAGCGCTCTGGTA TGACGCCGAGCAGGGCTGGAAGCGCATCGCCTATTGCCTCTTCGTCAACAACTTCTGCGAGGCGATCAGCCAGATCGGCG CCGGCAATGCGGCACTGCAGCGTCGCCTGTGGGCGGTCGTGCGCGACCATCTGCACCGCTATCAGAACCAGCATGGCGAC GACGCGTCGGCACGCCGCATCAACGCGCTGCTCGCCGGCGAAGCCTTTCCGGGCAAGGCCAATCTGATCAACCGCTTCTT CAAGCGCGCCGACCGCGCCTCCGGCTACCTGCCGGTCAACAACCCCCTCGGCACGCTCGCGGAGCGCCGCGCATGGAACT GA
Upstream 100 bases:
>100_bases GCGCGCCGTTCTTCATCGGCGCCGCCGTCCTGCTCGCCGCCGGCGCCTATCTCGGCGCCGTGGCGGCTCAACCGAGAAAC CCTTGACCCGAGGAGACAGC
Downstream 100 bases:
>100_bases GGCTCGCCGAGGTGTTCGCCCACCTGCGCGAAGCCGAAGCCGAGGCCGGCGCGCCCCTGTGCGCCTACCTCTACGACCTC GCCGCGCTCGACGCACACGC
Product: iron transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 613; Mature: 613
Protein sequence:
>613_residues MHSHHLASAIDAATLAQQEAGRRSMETLLNCYCREVAAPEGQLSVGPLFGQSDSPAAVHLALRGSGGRALHLRLPLTGER VLTVVDDACATGNYRYRSPMYCKAPGRPWALLDWQALAGRLLRELALKHEQPANDELMQQIADSVAVTASVLNHARRERF SSEPLQAFVESEQSLMFGHPFHPAPKSRQGLSGEDMRRYSPETGARFALHYFAVRREHLLQQSVLAEPCDRVVAAHAPDG IAADDDFFLLPVHPWQARHLLDQPAVATALAGDRMRDLGPQGADFYPTSSIRTLFHPDTPYFYKCSLNVRITNCVRKNAI YELEGALQVTRVLRGLGPQLRARFPNLAVMEEPAFLSADMKTGDARADKMITEGFGLILRHGFAGLLQPGVTPLLAGALF GNHVYGEARLAELLDALPRHAGTSREDAAESWFSRYVGELMHPVLYCYFAHGVIFEPHLQNVVIGVAAGEVRQVFLRDFE GVKLVQERFGAERLDAISARAREALWYDAEQGWKRIAYCLFVNNFCEAISQIGAGNAALQRRLWAVVRDHLHRYQNQHGD DASARRINALLAGEAFPGKANLINRFFKRADRASGYLPVNNPLGTLAERRAWN
Sequences:
>Translated_613_residues MHSHHLASAIDAATLAQQEAGRRSMETLLNCYCREVAAPEGQLSVGPLFGQSDSPAAVHLALRGSGGRALHLRLPLTGER VLTVVDDACATGNYRYRSPMYCKAPGRPWALLDWQALAGRLLRELALKHEQPANDELMQQIADSVAVTASVLNHARRERF SSEPLQAFVESEQSLMFGHPFHPAPKSRQGLSGEDMRRYSPETGARFALHYFAVRREHLLQQSVLAEPCDRVVAAHAPDG IAADDDFFLLPVHPWQARHLLDQPAVATALAGDRMRDLGPQGADFYPTSSIRTLFHPDTPYFYKCSLNVRITNCVRKNAI YELEGALQVTRVLRGLGPQLRARFPNLAVMEEPAFLSADMKTGDARADKMITEGFGLILRHGFAGLLQPGVTPLLAGALF GNHVYGEARLAELLDALPRHAGTSREDAAESWFSRYVGELMHPVLYCYFAHGVIFEPHLQNVVIGVAAGEVRQVFLRDFE GVKLVQERFGAERLDAISARAREALWYDAEQGWKRIAYCLFVNNFCEAISQIGAGNAALQRRLWAVVRDHLHRYQNQHGD DASARRINALLAGEAFPGKANLINRFFKRADRASGYLPVNNPLGTLAERRAWN >Mature_613_residues MHSHHLASAIDAATLAQQEAGRRSMETLLNCYCREVAAPEGQLSVGPLFGQSDSPAAVHLALRGSGGRALHLRLPLTGER VLTVVDDACATGNYRYRSPMYCKAPGRPWALLDWQALAGRLLRELALKHEQPANDELMQQIADSVAVTASVLNHARRERF SSEPLQAFVESEQSLMFGHPFHPAPKSRQGLSGEDMRRYSPETGARFALHYFAVRREHLLQQSVLAEPCDRVVAAHAPDG IAADDDFFLLPVHPWQARHLLDQPAVATALAGDRMRDLGPQGADFYPTSSIRTLFHPDTPYFYKCSLNVRITNCVRKNAI YELEGALQVTRVLRGLGPQLRARFPNLAVMEEPAFLSADMKTGDARADKMITEGFGLILRHGFAGLLQPGVTPLLAGALF GNHVYGEARLAELLDALPRHAGTSREDAAESWFSRYVGELMHPVLYCYFAHGVIFEPHLQNVVIGVAAGEVRQVFLRDFE GVKLVQERFGAERLDAISARAREALWYDAEQGWKRIAYCLFVNNFCEAISQIGAGNAALQRRLWAVVRDHLHRYQNQHGD DASARRINALLAGEAFPGKANLINRFFKRADRASGYLPVNNPLGTLAERRAWN
Specific function: Unknown
COG id: COG4264
COG function: function code Q; Siderophore synthetase component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iucA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007310 - InterPro: IPR022770 [H]
Pfam domain/function: PF06276 FhuF; PF04183 IucA_IucC [H]
EC number: NA
Molecular weight: Translated: 68031; Mature: 68031
Theoretical pI: Translated: 7.84; Mature: 7.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSHHLASAIDAATLAQQEAGRRSMETLLNCYCREVAAPEGQLSVGPLFGQSDSPAAVHL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEE ALRGSGGRALHLRLPLTGERVLTVVDDACATGNYRYRSPMYCKAPGRPWALLDWQALAGR EEECCCCCEEEEECCCCCCHHEEEHHHHHCCCCCCCCCCEEECCCCCCEEEECHHHHHHH LLRELALKHEQPANDELMQQIADSVAVTASVLNHARRERFSSEPLQAFVESEQSLMFGHP HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCC FHPAPKSRQGLSGEDMRRYSPETGARFALHYFAVRREHLLQQSVLAEPCDRVVAAHAPDG CCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC IAADDDFFLLPVHPWQARHLLDQPAVATALAGDRMRDLGPQGADFYPTSSIRTLFHPDTP CCCCCCEEEEECCCHHHHHHHCCCHHHHHHHCCHHHHCCCCCCCCCCCCCCCEEECCCCC YFYKCSLNVRITNCVRKNAIYELEGALQVTRVLRGLGPQLRARFPNLAVMEEPAFLSADM EEEEEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEECCCCCEECCC KTGDARADKMITEGFGLILRHGFAGLLQPGVTPLLAGALFGNHVYGEARLAELLDALPRH CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC AGTSREDAAESWFSRYVGELMHPVLYCYFAHGVIFEPHLQNVVIGVAAGEVRQVFLRDFE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHEEEEECHHHHHHHHHHCCC GVKLVQERFGAERLDAISARAREALWYDAEQGWKRIAYCLFVNNFCEAISQIGAGNAALQ HHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH RRLWAVVRDHLHRYQNQHGDDASARRINALLAGEAFPGKANLINRFFKRADRASGYLPVN HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC NPLGTLAERRAWN CCHHHHHHHCCCC >Mature Secondary Structure MHSHHLASAIDAATLAQQEAGRRSMETLLNCYCREVAAPEGQLSVGPLFGQSDSPAAVHL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEE ALRGSGGRALHLRLPLTGERVLTVVDDACATGNYRYRSPMYCKAPGRPWALLDWQALAGR EEECCCCCEEEEECCCCCCHHEEEHHHHHCCCCCCCCCCEEECCCCCCEEEECHHHHHHH LLRELALKHEQPANDELMQQIADSVAVTASVLNHARRERFSSEPLQAFVESEQSLMFGHP HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCC FHPAPKSRQGLSGEDMRRYSPETGARFALHYFAVRREHLLQQSVLAEPCDRVVAAHAPDG CCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC IAADDDFFLLPVHPWQARHLLDQPAVATALAGDRMRDLGPQGADFYPTSSIRTLFHPDTP CCCCCCEEEEECCCHHHHHHHCCCHHHHHHHCCHHHHCCCCCCCCCCCCCCCEEECCCCC YFYKCSLNVRITNCVRKNAIYELEGALQVTRVLRGLGPQLRARFPNLAVMEEPAFLSADM EEEEEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEECCCCCEECCC KTGDARADKMITEGFGLILRHGFAGLLQPGVTPLLAGALFGNHVYGEARLAELLDALPRH CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC AGTSREDAAESWFSRYVGELMHPVLYCYFAHGVIFEPHLQNVVIGVAAGEVRQVFLRDFE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHEEEEECHHHHHHHHHHCCC GVKLVQERFGAERLDAISARAREALWYDAEQGWKRIAYCLFVNNFCEAISQIGAGNAALQ HHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH RRLWAVVRDHLHRYQNQHGDDASARRINALLAGEAFPGKANLINRFFKRADRASGYLPVN HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC NPLGTLAERRAWN CCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11274118; 11481432 [H]