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The map label for this gene is rbfA

Identifier: 74316714

GI number: 74316714

Start: 735746

End: 736120

Strand: Reverse

Name: rbfA

Synonym: Tbd_0696

Alternate gene names: 74316714

Gene position: 736120-735746 (Counterclockwise)

Preceding gene: 74316715

Following gene: 74316713

Centisome position: 25.3

GC content: 65.6

Gene sequence:

>375_bases
ATGCCCAAGGATTTCCCCCGCGCCCGTCGCGTCGCCGACCAGATCCAGCGCGAACTGCCCGAGCTCATCCGCCAGGAAGT
GAAGGACCCGCGCGTCGGGATGCTCACGATCACCGAGGTCGAGGTCAACCGCGACATGGAGTTCGCCAAGGTCTACTTCA
CGACGATGGGTGGTGAAGCCGAGCACGCCGCCTGCCTGCAGGGCCTGCAGCGCGCGAGCGGCTTTCTGCGCTCTCAGCTC
TCGCATCGCATGCAGTTGCGCGTCGTACCCAAGCTGACCTTCGTCTACGACCGCTCGGTCGAGCATGGCATGGCGCTGAG
CCGGCTCATCGAAACGGCGGTCGCCGAAGACGCCAAGCACCCCAAGGACGAGTGA

Upstream 100 bases:

>100_bases
GGGGTCGGGATTCAGGGGCCAGGGGATGAGCGCGGTTCACCGCGCGCCTTTGATCCGCGACTTCCCCCTGATCTCCGACT
CCTGAGTCCTGACCCCTGAT

Downstream 100 bases:

>100_bases
AGCCCGCCCGCCAAGCTGTCGATGGCGTGCTGCTGCTGAACAAGCCGGTCGGGATCACCTCCAACGCCGCGCTGCAGAAG
GCCAAGTGGCTGCTGAACGC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MPKDFPRARRVADQIQRELPELIRQEVKDPRVGMLTITEVEVNRDMEFAKVYFTTMGGEAEHAACLQGLQRASGFLRSQL
SHRMQLRVVPKLTFVYDRSVEHGMALSRLIETAVAEDAKHPKDE

Sequences:

>Translated_124_residues
MPKDFPRARRVADQIQRELPELIRQEVKDPRVGMLTITEVEVNRDMEFAKVYFTTMGGEAEHAACLQGLQRASGFLRSQL
SHRMQLRVVPKLTFVYDRSVEHGMALSRLIETAVAEDAKHPKDE
>Mature_123_residues
PKDFPRARRVADQIQRELPELIRQEVKDPRVGMLTITEVEVNRDMEFAKVYFTTMGGEAEHAACLQGLQRASGFLRSQLS
HRMQLRVVPKLTFVYDRSVEHGMALSRLIETAVAEDAKHPKDE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=120, Percent_Identity=45.8333333333333, Blast_Score=111, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_THIDA (Q3SKX2)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_314454.1
- ProteinModelPortal:   Q3SKX2
- SMR:   Q3SKX2
- STRING:   Q3SKX2
- GeneID:   3672664
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_0696
- NMPDR:   fig|292415.3.peg.790
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   Q3SKX2
- BioCyc:   TDEN292415:TBD_0696-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14222; Mature: 14090

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKDFPRARRVADQIQRELPELIRQEVKDPRVGMLTITEVEVNRDMEFAKVYFTTMGGEA
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCC
EHAACLQGLQRASGFLRSQLSHRMQLRVVPKLTFVYDRSVEHGMALSRLIETAVAEDAKH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
PKDE
CCCC
>Mature Secondary Structure 
PKDFPRARRVADQIQRELPELIRQEVKDPRVGMLTITEVEVNRDMEFAKVYFTTMGGEA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCC
EHAACLQGLQRASGFLRSQLSHRMQLRVVPKLTFVYDRSVEHGMALSRLIETAVAEDAKH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
PKDE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA