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The map label for this gene is ycfD [C]

Identifier: 74316603

GI number: 74316603

Start: 614577

End: 615710

Strand: Reverse

Name: ycfD [C]

Synonym: Tbd_0585

Alternate gene names: 74316603

Gene position: 615710-614577 (Counterclockwise)

Preceding gene: 74316617

Following gene: 74316602

Centisome position: 21.16

GC content: 67.11

Gene sequence:

>1134_bases
ATGTCCACGCCTCGTTCCGCCGACCCGCTCCTGGGCGGCCTCAGTCCGACCCGCTTCCTGCGCGACGTCTGGCACAAACG
GCCGCTCTTGATCCGCAACGCCGTCCCCGGGTTCCAGGGTCTGTTGTCGCCGCGCGAGATGGAGCAACTCGCCTGCCGCG
ACGACGTCGAATCGCGCCTGGTGCAGGGCAGCGGCAGCGATTGGCGGCTTGCGCACGGCCCCTTCAGCAAGACCGACTTC
AAGCGCCTCCCCAAGACCGAGTGGACGCTCCTGGTCCAGTCGCTCAACCATGTCCTGCCCGAAGCCGACGTCTTGCTCGC
GCGCTTCGACTTCATTCCGCACGCCCGCCTCGACGATCTGATGGTGAGCTACGCGGTGCCGCGCGGCAGCGTCGGCCCGC
ATTTCGATTCCTACGACGTGTTTCTGCTGCAGGGCCAGGGGCATCGCCGCTGGCAGATCAGCACGCAAACCGATCTCGCG
CTCGTCGACGACGCGCCGCTCAAGATCCTGAAGCATTTCGAGGTCGCCGACGAATGGGTGCTCGGGCCGGGGGACATGCT
CTATCTGCCGCCGCACGTGGCGCATTACGGTGTGGCCGAAGACGCGTGCATGACCTATTCGATCGGATTTCGCGCGCCGA
CCGTCGAAGAACTGGCGCACGGCTTCCTGATGCATCTGCAGGATACGCTCAGCCTCGAGGGCCGCTACGCTGATCCCGAC
CTGCGTCTGCAACGTCATCCGGGCGAAATCGGCCGCGCGATGCTCGATCAGATCGAGGCCATGATCGACCGCATCCGCTG
GAGCCGCAACGACGTCGCCGAATTCGCCGGCCGCTACCTGTCGGAGCCGAAGCCGAACGTGTTTTTCCGGGCGCCCGACG
CCCCCCTCACGCGCCGCGCCTTCGACCGGCGTGCGAATAGCGCCGGCGTCGCGCTCGATCCGAAGTCGCGTCTGCTGTTC
CGCGGCCGGCGTTTCTTCATCAATGGCGAGGCGTTCACGCCGCCACGGGACGACTTCGCCACGCTAACCCGACTCGCCGA
TCGGCGCCGCCTCGCGCCCCCGCTGTCGACGGCGCTCTGCGCGCGCTTCTATGCCTGGTACGAAGCCGGCTGGCTGGAGA
TCGACGGCGAATGA

Upstream 100 bases:

>100_bases
GTTCCCCAAATTAACCAGAACGCGGAAAGCCCGGCCGACGCTCGCCCGCGGCACCCGCTCCGGCGAAGAAGCACGCCGCA
GCGTCGTTATAATCCCCCGC

Downstream 100 bases:

>100_bases
CCGCCTTCGAAACCCCGTCCGAACTCCGCGCCGCGTTCGACACGCTGCTGAGCACGACACGTCGAACGCTGCGTGTCTAC
GAACACGATCTCGCGGTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSTPRSADPLLGGLSPTRFLRDVWHKRPLLIRNAVPGFQGLLSPREMEQLACRDDVESRLVQGSGSDWRLAHGPFSKTDF
KRLPKTEWTLLVQSLNHVLPEADVLLARFDFIPHARLDDLMVSYAVPRGSVGPHFDSYDVFLLQGQGHRRWQISTQTDLA
LVDDAPLKILKHFEVADEWVLGPGDMLYLPPHVAHYGVAEDACMTYSIGFRAPTVEELAHGFLMHLQDTLSLEGRYADPD
LRLQRHPGEIGRAMLDQIEAMIDRIRWSRNDVAEFAGRYLSEPKPNVFFRAPDAPLTRRAFDRRANSAGVALDPKSRLLF
RGRRFFINGEAFTPPRDDFATLTRLADRRRLAPPLSTALCARFYAWYEAGWLEIDGE

Sequences:

>Translated_377_residues
MSTPRSADPLLGGLSPTRFLRDVWHKRPLLIRNAVPGFQGLLSPREMEQLACRDDVESRLVQGSGSDWRLAHGPFSKTDF
KRLPKTEWTLLVQSLNHVLPEADVLLARFDFIPHARLDDLMVSYAVPRGSVGPHFDSYDVFLLQGQGHRRWQISTQTDLA
LVDDAPLKILKHFEVADEWVLGPGDMLYLPPHVAHYGVAEDACMTYSIGFRAPTVEELAHGFLMHLQDTLSLEGRYADPD
LRLQRHPGEIGRAMLDQIEAMIDRIRWSRNDVAEFAGRYLSEPKPNVFFRAPDAPLTRRAFDRRANSAGVALDPKSRLLF
RGRRFFINGEAFTPPRDDFATLTRLADRRRLAPPLSTALCARFYAWYEAGWLEIDGE
>Mature_376_residues
STPRSADPLLGGLSPTRFLRDVWHKRPLLIRNAVPGFQGLLSPREMEQLACRDDVESRLVQGSGSDWRLAHGPFSKTDFK
RLPKTEWTLLVQSLNHVLPEADVLLARFDFIPHARLDDLMVSYAVPRGSVGPHFDSYDVFLLQGQGHRRWQISTQTDLAL
VDDAPLKILKHFEVADEWVLGPGDMLYLPPHVAHYGVAEDACMTYSIGFRAPTVEELAHGFLMHLQDTLSLEGRYADPDL
RLQRHPGEIGRAMLDQIEAMIDRIRWSRNDVAEFAGRYLSEPKPNVFFRAPDAPLTRRAFDRRANSAGVALDPKSRLLFR
GRRFFINGEAFTPPRDDFATLTRLADRRRLAPPLSTALCARFYAWYEAGWLEIDGE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=320, Percent_Identity=33.125, Blast_Score=182, Evalue=4e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42854; Mature: 42723

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPRSADPLLGGLSPTRFLRDVWHKRPLLIRNAVPGFQGLLSPREMEQLACRDDVESRL
CCCCCCCCCHHCCCCHHHHHHHHHHCCCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHH
VQGSGSDWRLAHGPFSKTDFKRLPKTEWTLLVQSLNHVLPEADVLLARFDFIPHARLDDL
HCCCCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHH
MVSYAVPRGSVGPHFDSYDVFLLQGQGHRRWQISTQTDLALVDDAPLKILKHFEVADEWV
HHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHEE
LGPGDMLYLPPHVAHYGVAEDACMTYSIGFRAPTVEELAHGFLMHLQDTLSLEGRYADPD
ECCCCEEEECCHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
LRLQRHPGEIGRAMLDQIEAMIDRIRWSRNDVAEFAGRYLSEPKPNVFFRAPDAPLTRRA
CEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
FDRRANSAGVALDPKSRLLFRGRRFFINGEAFTPPRDDFATLTRLADRRRLAPPLSTALC
HHHCCCCCCEEECCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
ARFYAWYEAGWLEIDGE
HHHHHHHHCCEEEECCC
>Mature Secondary Structure 
STPRSADPLLGGLSPTRFLRDVWHKRPLLIRNAVPGFQGLLSPREMEQLACRDDVESRL
CCCCCCCCHHCCCCHHHHHHHHHHCCCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHH
VQGSGSDWRLAHGPFSKTDFKRLPKTEWTLLVQSLNHVLPEADVLLARFDFIPHARLDDL
HCCCCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHH
MVSYAVPRGSVGPHFDSYDVFLLQGQGHRRWQISTQTDLALVDDAPLKILKHFEVADEWV
HHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHEE
LGPGDMLYLPPHVAHYGVAEDACMTYSIGFRAPTVEELAHGFLMHLQDTLSLEGRYADPD
ECCCCEEEECCHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
LRLQRHPGEIGRAMLDQIEAMIDRIRWSRNDVAEFAGRYLSEPKPNVFFRAPDAPLTRRA
CEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
FDRRANSAGVALDPKSRLLFRGRRFFINGEAFTPPRDDFATLTRLADRRRLAPPLSTALC
HHHCCCCCCEEECCHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
ARFYAWYEAGWLEIDGE
HHHHHHHHCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]