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The map label for this gene is nrfC [H]

Identifier: 74316589

GI number: 74316589

Start: 601170

End: 601865

Strand: Direct

Name: nrfC [H]

Synonym: Tbd_0571

Alternate gene names: 74316589

Gene position: 601170-601865 (Clockwise)

Preceding gene: 74316588

Following gene: 74316590

Centisome position: 20.66

GC content: 63.51

Gene sequence:

>696_bases
ATGAGACTTGGATTGGTCATCGACCTTGACGTGTGCGTGGGCTGTCATGCCTGCGCCATCGCCTGCAAGGAGTGGAACGC
CTCCGGCACCATCGGCCCGTTGTCGGATTACCAGCCCTACGGCGCCGAGCCGTCGGGCGTCTGGTTCAACCGGATCCGCC
ATTACGAGATGGACGAGTATCCGAACAACAAGACCGTCAACTTCCCGATGTCGTGCATGCACTGCGAGGACGCCGACTGC
GTCACGGTGTGCCCGACCGGCGCGTCGTACAAGCGTGCCGAGGACGGCATCGTGCTGATCGACCAGGATAAGTGCATGGG
CTGCAACTACTGCTCCTGGGCCTGCCCCTACGGCGCGCGCGAACTCGACCGATCGAGCGGCACGATGAAGAAATGCACGC
TGTGCGTCGACCGTATCTACGACGAGAACCTGCCGGTCGAGGAGCGCCAACCCTCGTGCGTGCTGACCTGCCCGGCGCAC
GCGCGCATGTTCGGCGACTTCGACGATCCCGATTCGGCGGTGTCGCGCGTGGTGCGCGAGCGCGGCGGGTATCCGCTGAT
GCCCGAGCTCAACTACAACCCGACGAACACCTATCTGCCGATCCGTCGCAAGCCGGTGATCGGGGTGGAAACCAAACCGA
AGGGCGGCTTGAAGGAAAGCATCAAGCAGTTCGCCAACAGGCTGGTGCGCCGTTGA

Upstream 100 bases:

>100_bases
GTTACGAGCGCCCCGACGTGTTGCGCTACGACGCGCGCAGCCACGAAAAAAACTGAACGGCAGAACTGAGCAGTACCTAT
ATAAATAAAGCGAGCACAAC

Downstream 100 bases:

>100_bases
GCGACGCCGCAAGATAAATCGCGTTCGAAGTATTCGTCATCGGTGATGTCCGGCGCGGCTCGCGGAGCCGATCGCCGGTC
CCGCCGGTTGCCCTGATTAG

Product: DMSO reductase subunit B

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MRLGLVIDLDVCVGCHACAIACKEWNASGTIGPLSDYQPYGAEPSGVWFNRIRHYEMDEYPNNKTVNFPMSCMHCEDADC
VTVCPTGASYKRAEDGIVLIDQDKCMGCNYCSWACPYGARELDRSSGTMKKCTLCVDRIYDENLPVEERQPSCVLTCPAH
ARMFGDFDDPDSAVSRVVRERGGYPLMPELNYNPTNTYLPIRRKPVIGVETKPKGGLKESIKQFANRLVRR

Sequences:

>Translated_231_residues
MRLGLVIDLDVCVGCHACAIACKEWNASGTIGPLSDYQPYGAEPSGVWFNRIRHYEMDEYPNNKTVNFPMSCMHCEDADC
VTVCPTGASYKRAEDGIVLIDQDKCMGCNYCSWACPYGARELDRSSGTMKKCTLCVDRIYDENLPVEERQPSCVLTCPAH
ARMFGDFDDPDSAVSRVVRERGGYPLMPELNYNPTNTYLPIRRKPVIGVETKPKGGLKESIKQFANRLVRR
>Mature_231_residues
MRLGLVIDLDVCVGCHACAIACKEWNASGTIGPLSDYQPYGAEPSGVWFNRIRHYEMDEYPNNKTVNFPMSCMHCEDADC
VTVCPTGASYKRAEDGIVLIDQDKCMGCNYCSWACPYGARELDRSSGTMKKCTLCVDRIYDENLPVEERQPSCVLTCPAH
ARMFGDFDDPDSAVSRVVRERGGYPLMPELNYNPTNTYLPIRRKPVIGVETKPKGGLKESIKQFANRLVRR

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=203, Percent_Identity=36.9458128078818, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787122, Length=172, Percent_Identity=37.7906976744186, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1787872, Length=172, Percent_Identity=36.6279069767442, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI226510944, Length=172, Percent_Identity=35.4651162790698, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787749, Length=161, Percent_Identity=33.5403726708075, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790326, Length=176, Percent_Identity=32.3863636363636, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789370, Length=211, Percent_Identity=32.7014218009479, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787478, Length=131, Percent_Identity=38.1679389312977, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1787740, Length=118, Percent_Identity=39.8305084745763, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1788811, Length=177, Percent_Identity=31.0734463276836, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082180, Length=171, Percent_Identity=30.9941520467836, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI2367245, Length=170, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1789067, Length=183, Percent_Identity=30.0546448087432, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082179, Length=165, Percent_Identity=27.8787878787879, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787963, Length=141, Percent_Identity=27.6595744680851, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25911; Mature: 25911

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
10.4 %Cys+Met (Translated Protein)
6.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
10.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGLVIDLDVCVGCHACAIACKEWNASGTIGPLSDYQPYGAEPSGVWFNRIRHYEMDEY
CCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
PNNKTVNFPMSCMHCEDADCVTVCPTGASYKRAEDGIVLIDQDKCMGCNYCSWACPYGAR
CCCCEEECCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHH
ELDRSSGTMKKCTLCVDRIYDENLPVEERQPSCVLTCPAHARMFGDFDDPDSAVSRVVRE
HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHCCCCCCCHHHHHHHHHHH
RGGYPLMPELNYNPTNTYLPIRRKPVIGVETKPKGGLKESIKQFANRLVRR
CCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLGLVIDLDVCVGCHACAIACKEWNASGTIGPLSDYQPYGAEPSGVWFNRIRHYEMDEY
CCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
PNNKTVNFPMSCMHCEDADCVTVCPTGASYKRAEDGIVLIDQDKCMGCNYCSWACPYGAR
CCCCEEECCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHH
ELDRSSGTMKKCTLCVDRIYDENLPVEERQPSCVLTCPAHARMFGDFDDPDSAVSRVVRE
HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHCCCCCCCHHHHHHHHHHH
RGGYPLMPELNYNPTNTYLPIRRKPVIGVETKPKGGLKESIKQFANRLVRR
CCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]