| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is uvrA [H]
Identifier: 74316454
GI number: 74316454
Start: 454617
End: 457439
Strand: Reverse
Name: uvrA [H]
Synonym: Tbd_0436
Alternate gene names: 74316454
Gene position: 457439-454617 (Counterclockwise)
Preceding gene: 74316465
Following gene: 74316453
Centisome position: 15.72
GC content: 66.35
Gene sequence:
>2823_bases ATGGAATTCATCCGCATCCGCGGCGCACGCACGCACAATCTCAAGAACGTCAACCTCGACCTACCGCGCGACAAGCTGGT CGTGATCACGGGTCTGTCGGGGTCGGGCAAATCCTCGCTCGCCTTCGACACGCTCTACGCCGAAGGGCAACGGCGCTACG TCGAATCGCTGTCGGCGTACGCGCGGCAGTTCCTGCAATTGATGGAAAAGCCCGACGTCGACCTGATCGAGGGTCTGAGT CCGGCGATTTCGATTGAGCAGAAGGCGACGAGCCACAACCCGCGCTCCACGGTCGGCACGGTCACCGAAATCCACGACTA CCTGCGGCTGCTCTATGCGCGCGTCGGCGATCCGCAATGTCCCGAGCACGGCATCACGCTCGCCGCGCAGACCGTCTCGC AGATGGTCGACGCGGTGCTCGCGCTGCCCGAGGACACGAAGCTCATGATCCTCGCGCCGCTCGTCGTCGGCCGCAAAGGC GAGAACCTGGAACTCTTCGCCGAGCTTCGCGCGCAGGGCTTCGTGCGCGTGCGCGTCGACGGCAAGGTGCACGAGATCGA CGCGGTCCCCAAGCTCGACAAGAACAAGAAACACACGATCGAGGTCGTCGTCGACCGCCTCAAGGTCAGGCCCGACGCCA AGCAGCGTCTCGCCGAGAGTTTCGAGACCGCGCTGCGCCATGCCGACGGCCGCGCGCTCGCGGTCGAGATGGACAGCGGC GAGGAGCATCTCTTCTCCGCGAAGTTCGCGTGTCCGGTCTGCAGCTACGCGCTGCCCGAACTCGAACCGCGCCTGTTTTC GTTCAACAATCCGATGGGCGCGTGCGAGACCTGCGACGGCCTCGGCTCGATCACCTTCTTCGACCCGGCGCGGGTCGTTG CCTTTCCGCATCTTTCGCTCGCGAGCGGCGCGATCAAGGGCTGGGACAAACGCAACCAATTCTTCTACATGATGCTGCAG AGCCTCGCGCTGCATTACGGCTTCGACCTCGACACGCCGTGGGACGCGTTGCCGGCGCGCATCCGCGAGGTGATCCTGAA CGGCAGCGGCAAGGAAGCGATCGCGTTCCAGACGCTCGCGCCGCGCGGCGGCTTCACGACCAAGCGCTACCCGTTCGAAG GCGTGCTCGCCAACATGGAGCGGCGCTACCACGAGTCGGACTCGATGGCGGTGCGCGAGGAACTCGCCAAATACCAGAAC AACAAGCCCTGCCCCGCCTGCGACGGCACGCGCCTGCGCGAAGAGGCGCGCCACGTGATGGTCGGCGGCGCGCCCATCTA CCGGGTCAGCGCCCTGCCGCTGAAACAGGTGCAGGCCTTCTTCGCAGGGCTCGAGCTCGACGGCCAGCGGGCGCAGATCG CCGACAAGATCGTCAAGGAAATCATCGCCCGCGTCGGCTTCCTCAACAACGTCGGCCTCGACTACCTCTCGCTCGACCGC TCGGCCGACACCCTCTCGGGCGGCGAGGCGCAGCGCATTCGTCTGGCCTCGCAGATCGGCTCGGGCCTCACGGGCGTCAT GTACGTGCTCGACGAGCCGTCGATCGGCCTGCACCAGCGCGACAACGATCGCCTGCTGGCGACGCTCAAGCACCTGCGCG ACATCGGCAACTCGGTGCTGGTCGTCGAGCACGACGAGGATGCGATCCGCGCGGCGGACTACGTCGTCGACATGGGTCCG GGCGCGGGTGTCCATGGCGGCGAAGTCGTCGCCGAGGGCAGTCCCGAGGAAATCCGGCTCAGCGCCGATTCGCTGACCGG CCAGTACCTGTCGGGACGGCTGCGCATCGACATCCCGAAGAAGCGGCGGCGGGCCGATCCCGAACGGCAGCTCGTCGTCA CGAATGCCCGCGGCAACAATCTCAAGAATGTCACGATGCGCCTCCCCGTCGGGCTCTTCGTGTGCATCACGGGCGTGTCG GGTTCGGGCAAATCGACGCTCATCAACGACACGCTCTACGCCGCGGTCGCGCGCCATCTCTATGGCTCGAGCACGGAGCC CGCGCCACACGACGAGATCCAGGGCCTCGAGTACTTCGACAAGGTGATCAACGTCGACCAGTCGCCGATCGGCCGCACGC CGCGCTCGAACCCGGCGACCTATACCGGGCTCTTCACGCCGATCCGCGAACTCTTCGCCGGCGTGCCCGAGGCGCGCGCA CGCGGCTACGGCCCCGGCCGCTTCAGCTTCAACGTCAAGGGCGGGCGCTGTGAGGCCTGCCAGGGCGACGGCGTGATCAA GGTCGAGATGCATTTCCTGCCGGACATCTACGTGCCCTGCGACGTCTGCCACGGCGCGCGCTATAACCGCGAGACGCTCG AAGTGCAGTACAAGGGCAAGACGATCCGCGACATTCTCGAGATGACGATCGAGCAGGCGCACGAATTCTTCGCGGCAGTA CCCGTCGTCAGCCGCAAGCTGCAGACGCTGCTCGACGTCGGGCTCGGCTACATCCGGCTCGGCCAGTCGGCGACGACGCT GTCGGGCGGCGAAGCGCAGCGGGTCAAGCTCGCGCTCGAGCTTTCCAAGCGCGACACCGGCCGCACGCTGTATATCCTCG ACGAGCCGACGACCGGGCTGCACTTCGCCGACATCGATCTGCTGTTGAAGGTCTTGCAGCGTCTTTCCGAAGCGGGCAAT AGCGTGGTCGTCATCGAACACAACCTCGACGTCATCAAGACCGCCGACTGGCTGATCGACCTCGGCCCCGAAGGCGGCGC GGGCGGCGGCCTCATCATCGCCGAGGGCCCGCCCGAAGCCGTCGCGGACAACCCGGCGAGCCACACCGGGCAGTATCTTC AACCGGTGCTGTCGAGGCGCTGA
Upstream 100 bases:
>100_bases GGTCGATGTGGGCCACGACTGGATTCGGTGAATTGCGGAAGTCCGTTATATTAGCAGGTTGCGAATTACGCCCGCCGCCC TAACCGATGGCCGTCATCCC
Downstream 100 bases:
>100_bases GATGGCCGAGCCGGTCCGTCTGTCCAAGCTCATGTCGGAGCGCGGCCTGTGCTCGCGGCGCGAGGCCGACGCCTTCATCG AACGCGGGCTCGTGTTCGTC
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 940; Mature: 940
Protein sequence:
>940_residues MEFIRIRGARTHNLKNVNLDLPRDKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS PAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGDPQCPEHGITLAAQTVSQMVDAVLALPEDTKLMILAPLVVGRKG ENLELFAELRAQGFVRVRVDGKVHEIDAVPKLDKNKKHTIEVVVDRLKVRPDAKQRLAESFETALRHADGRALAVEMDSG EEHLFSAKFACPVCSYALPELEPRLFSFNNPMGACETCDGLGSITFFDPARVVAFPHLSLASGAIKGWDKRNQFFYMMLQ SLALHYGFDLDTPWDALPARIREVILNGSGKEAIAFQTLAPRGGFTTKRYPFEGVLANMERRYHESDSMAVREELAKYQN NKPCPACDGTRLREEARHVMVGGAPIYRVSALPLKQVQAFFAGLELDGQRAQIADKIVKEIIARVGFLNNVGLDYLSLDR SADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKHLRDIGNSVLVVEHDEDAIRAADYVVDMGP GAGVHGGEVVAEGSPEEIRLSADSLTGQYLSGRLRIDIPKKRRRADPERQLVVTNARGNNLKNVTMRLPVGLFVCITGVS GSGKSTLINDTLYAAVARHLYGSSTEPAPHDEIQGLEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPEARA RGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCHGARYNRETLEVQYKGKTIRDILEMTIEQAHEFFAAV PVVSRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIDLLLKVLQRLSEAGN SVVVIEHNLDVIKTADWLIDLGPEGGAGGGLIIAEGPPEAVADNPASHTGQYLQPVLSRR
Sequences:
>Translated_940_residues MEFIRIRGARTHNLKNVNLDLPRDKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS PAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGDPQCPEHGITLAAQTVSQMVDAVLALPEDTKLMILAPLVVGRKG ENLELFAELRAQGFVRVRVDGKVHEIDAVPKLDKNKKHTIEVVVDRLKVRPDAKQRLAESFETALRHADGRALAVEMDSG EEHLFSAKFACPVCSYALPELEPRLFSFNNPMGACETCDGLGSITFFDPARVVAFPHLSLASGAIKGWDKRNQFFYMMLQ SLALHYGFDLDTPWDALPARIREVILNGSGKEAIAFQTLAPRGGFTTKRYPFEGVLANMERRYHESDSMAVREELAKYQN NKPCPACDGTRLREEARHVMVGGAPIYRVSALPLKQVQAFFAGLELDGQRAQIADKIVKEIIARVGFLNNVGLDYLSLDR SADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKHLRDIGNSVLVVEHDEDAIRAADYVVDMGP GAGVHGGEVVAEGSPEEIRLSADSLTGQYLSGRLRIDIPKKRRRADPERQLVVTNARGNNLKNVTMRLPVGLFVCITGVS GSGKSTLINDTLYAAVARHLYGSSTEPAPHDEIQGLEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPEARA RGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCHGARYNRETLEVQYKGKTIRDILEMTIEQAHEFFAAV PVVSRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIDLLLKVLQRLSEAGN SVVVIEHNLDVIKTADWLIDLGPEGGAGGGLIIAEGPPEAVADNPASHTGQYLQPVLSRR >Mature_940_residues MEFIRIRGARTHNLKNVNLDLPRDKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS PAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGDPQCPEHGITLAAQTVSQMVDAVLALPEDTKLMILAPLVVGRKG ENLELFAELRAQGFVRVRVDGKVHEIDAVPKLDKNKKHTIEVVVDRLKVRPDAKQRLAESFETALRHADGRALAVEMDSG EEHLFSAKFACPVCSYALPELEPRLFSFNNPMGACETCDGLGSITFFDPARVVAFPHLSLASGAIKGWDKRNQFFYMMLQ SLALHYGFDLDTPWDALPARIREVILNGSGKEAIAFQTLAPRGGFTTKRYPFEGVLANMERRYHESDSMAVREELAKYQN NKPCPACDGTRLREEARHVMVGGAPIYRVSALPLKQVQAFFAGLELDGQRAQIADKIVKEIIARVGFLNNVGLDYLSLDR SADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKHLRDIGNSVLVVEHDEDAIRAADYVVDMGP GAGVHGGEVVAEGSPEEIRLSADSLTGQYLSGRLRIDIPKKRRRADPERQLVVTNARGNNLKNVTMRLPVGLFVCITGVS GSGKSTLINDTLYAAVARHLYGSSTEPAPHDEIQGLEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPEARA RGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCHGARYNRETLEVQYKGKTIRDILEMTIEQAHEFFAAV PVVSRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIDLLLKVLQRLSEAGN SVVVIEHNLDVIKTADWLIDLGPEGGAGGGLIIAEGPPEAVADNPASHTGQYLQPVLSRR
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=940, Percent_Identity=70.531914893617, Blast_Score=1361, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 103153; Mature: 103153
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFIRIRGARTHNLKNVNLDLPRDKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCEEEECCCCCCCCEECEEECCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGDPQC HHHHHHHHHCCCCHHHHCCCCCEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC PEHGITLAAQTVSQMVDAVLALPEDTKLMILAPLVVGRKGENLELFAELRAQGFVRVRVD CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEHCCCCCCCHHHHHHHHHCCEEEEEEC GKVHEIDAVPKLDKNKKHTIEVVVDRLKVRPDAKQRLAESFETALRHADGRALAVEMDSG CCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC EEHLFSAKFACPVCSYALPELEPRLFSFNNPMGACETCDGLGSITFFDPARVVAFPHLSL CHHHEEHHHHCCHHHHCCCCCCCHHEECCCCCCCHHHCCCCCCEEEECCCCEEEECCHHH ASGAIKGWDKRNQFFYMMLQSLALHYGFDLDTPWDALPARIREVILNGSGKEAIAFQTLA HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEC PRGGFTTKRYPFEGVLANMERRYHESDSMAVREELAKYQNNKPCPACDGTRLREEARHVM CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEE VGGAPIYRVSALPLKQVQAFFAGLELDGQRAQIADKIVKEIIARVGFLNNVGLDYLSLDR ECCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCEEECCC SADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKHLRDIGNSVL CCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEE VVEHDEDAIRAADYVVDMGPGAGVHGGEVVAEGSPEEIRLSADSLTGQYLSGRLRIDIPK EEECCCCHHHHHHEEEECCCCCCCCCCEEEECCCCCEEEEEHHHHCHHHHCCEEEEECCH KRRRADPERQLVVTNARGNNLKNVTMRLPVGLFVCITGVSGSGKSTLINDTLYAAVARHL HHHCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEHHHHHHHHHHHH YGSSTEPAPHDEIQGLEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPEARA CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCHHH RGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCHGARYNRETLEVQYKGK CCCCCCEEEEEECCCEECCCCCCCEEEEEEEECCCCCCCCHHHCCCCCCCCEEEEEECCC TIRDILEMTIEQAHEFFAAVPVVSRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLALE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEEE LSKRDTGRTLYILDEPTTGLHFADIDLLLKVLQRLSEAGNSVVVIEHNLDVIKTADWLID ECCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCEEEE LGPEGGAGGGLIIAEGPPEAVADNPASHTGQYLQPVLSRR ECCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHHHHHCCC >Mature Secondary Structure MEFIRIRGARTHNLKNVNLDLPRDKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCEEEECCCCCCCCEECEEECCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGDPQC HHHHHHHHHCCCCHHHHCCCCCEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC PEHGITLAAQTVSQMVDAVLALPEDTKLMILAPLVVGRKGENLELFAELRAQGFVRVRVD CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEHCCCCCCCHHHHHHHHHCCEEEEEEC GKVHEIDAVPKLDKNKKHTIEVVVDRLKVRPDAKQRLAESFETALRHADGRALAVEMDSG CCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC EEHLFSAKFACPVCSYALPELEPRLFSFNNPMGACETCDGLGSITFFDPARVVAFPHLSL CHHHEEHHHHCCHHHHCCCCCCCHHEECCCCCCCHHHCCCCCCEEEECCCCEEEECCHHH ASGAIKGWDKRNQFFYMMLQSLALHYGFDLDTPWDALPARIREVILNGSGKEAIAFQTLA HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEC PRGGFTTKRYPFEGVLANMERRYHESDSMAVREELAKYQNNKPCPACDGTRLREEARHVM CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEE VGGAPIYRVSALPLKQVQAFFAGLELDGQRAQIADKIVKEIIARVGFLNNVGLDYLSLDR ECCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCEEECCC SADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKHLRDIGNSVL CCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEE VVEHDEDAIRAADYVVDMGPGAGVHGGEVVAEGSPEEIRLSADSLTGQYLSGRLRIDIPK EEECCCCHHHHHHEEEECCCCCCCCCCEEEECCCCCEEEEEHHHHCHHHHCCEEEEECCH KRRRADPERQLVVTNARGNNLKNVTMRLPVGLFVCITGVSGSGKSTLINDTLYAAVARHL HHHCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEHHHHHHHHHHHH YGSSTEPAPHDEIQGLEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPEARA CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCHHH RGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCHGARYNRETLEVQYKGK CCCCCCEEEEEECCCEECCCCCCCEEEEEEEECCCCCCCCHHHCCCCCCCCEEEEEECCC TIRDILEMTIEQAHEFFAAVPVVSRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLALE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEEE LSKRDTGRTLYILDEPTTGLHFADIDLLLKVLQRLSEAGNSVVVIEHNLDVIKTADWLID ECCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCEEEE LGPEGGAGGGLIIAEGPPEAVADNPASHTGQYLQPVLSRR ECCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9197406 [H]