| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316222
Identifier: 74316222
GI number: 74316222
Start: 222138
End: 222755
Strand: Direct
Name: 74316222
Synonym: Tbd_0204
Alternate gene names: NA
Gene position: 222138-222755 (Clockwise)
Preceding gene: 74316221
Following gene: 74316223
Centisome position: 7.63
GC content: 61.49
Gene sequence:
>618_bases ATGACCTTTGACGACCTCAACAACCTCGATCTGAAGGCCGCCGCCGACTGGCCGCTGCCGACCAAGCTCGTCGCCTTGTC GCTGCTGGCCGTCGCGATCGTTGCGGCCGGATGGTGGTTCGACTGGCGGGGTGGCATGGAAGCCGTCGACGCCGCGAAGC AGAAGGAAACGGAATTGCGCAGCGTCTTCGCGACCAAGAAGAATCAGGCGATCAACCTCGAGGCGTACCGGAAGCAGCTG ACCGACATCGAGCAGGCCTTCGGCGCCTTGCTCAAGCAGCTGCCGAACAAGCAGGAAATGGACGCGCTGATCACCGACGT CAACCAGGCCGGACTCGGGCGCGGGCTGCAATTCGAGCTGTTTCGCCCCGAGGCCGAGACGGTCTCCGAGTTTTATGCGG AAACACCGATCCGCGTCAAAGTCACGGGCGGCTATCACGATGTCGCCGCGTTCGTCAGCGACGTCTCCAAGCTGTCGCGC ATCGTGACGCTGCACGACATTGCGATGGTGCCATCCAAGGATCTGCTGAACATGGACGCGACGGTCAAGACCTACCGCTA TCTCGACGACGAGGAAGTCATCGCGCGGAAACAGAAAACCAAGGAGCAGCCGAAATGA
Upstream 100 bases:
>100_bases TCAAGGCAGCGACCGTGAACAATCTGCGCGCCAATGAATTCGTTCTGACGGTGAAGCAATCGAGGCAGCAGGCCGACGCT GCGACCGAAGGGGGCAAGGC
Downstream 100 bases:
>100_bases AGCGCCTGGCTACGGTATTGATCGCGCTCGGCCTGGGTGGCTGCGGCGGCAGCGGCACCGAGGACCTGCAGGCGTTTGTC AACGAAACCGGCAGGGACAT
Product: type IV pilus assembly membrane transmembrane protein
Products: NA
Alternate protein names: Type IV Pilus Biogenesis Protein PilO; Type 4 Fimbrial Biogenesis Protein PilO; Fimbrial Assembly Protein PilO; Type IV Pilus Assembly Protein PilO; Fimbrial Assembly Membrane Protein; Tfp Pilus Assembly Protein PilO; Pilus Assembly Protein; Tfp Pilus Assembly Protein PilO-Like Protein; Fimbrial Type-4 Assembly Transmembrane Protein; Fimbrial Type-4 Assembly Membrane Transmembrane Protein; Type IV Pilus Assembly Membrane Transmembrane Protein; Pilo Protein; Pilus Assembly Protein Pilo; PilO Type IV Pilus Assembly Protein; Fimbriae Biogenesis-Related Fusion Protein; Fimbrial Type-IV Assembly Protein PilO; Fimbrial Assembly Protein; Pili Assembly Protein PilO; Pilus Iv Assembly Membrane Protein Pilo; Type 4 Fimbrial Biogenesis Protein; Pilus Assembly Protein PilO-Like
Number of amino acids: Translated: 205; Mature: 204
Protein sequence:
>205_residues MTFDDLNNLDLKAAADWPLPTKLVALSLLAVAIVAAGWWFDWRGGMEAVDAAKQKETELRSVFATKKNQAINLEAYRKQL TDIEQAFGALLKQLPNKQEMDALITDVNQAGLGRGLQFELFRPEAETVSEFYAETPIRVKVTGGYHDVAAFVSDVSKLSR IVTLHDIAMVPSKDLLNMDATVKTYRYLDDEEVIARKQKTKEQPK
Sequences:
>Translated_205_residues MTFDDLNNLDLKAAADWPLPTKLVALSLLAVAIVAAGWWFDWRGGMEAVDAAKQKETELRSVFATKKNQAINLEAYRKQL TDIEQAFGALLKQLPNKQEMDALITDVNQAGLGRGLQFELFRPEAETVSEFYAETPIRVKVTGGYHDVAAFVSDVSKLSR IVTLHDIAMVPSKDLLNMDATVKTYRYLDDEEVIARKQKTKEQPK >Mature_204_residues TFDDLNNLDLKAAADWPLPTKLVALSLLAVAIVAAGWWFDWRGGMEAVDAAKQKETELRSVFATKKNQAINLEAYRKQLT DIEQAFGALLKQLPNKQEMDALITDVNQAGLGRGLQFELFRPEAETVSEFYAETPIRVKVTGGYHDVAAFVSDVSKLSRI VTLHDIAMVPSKDLLNMDATVKTYRYLDDEEVIARKQKTKEQPK
Specific function: Unknown
COG id: COG3167
COG function: function code NU; Tfp pilus assembly protein PilO
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22989; Mature: 22857
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFDDLNNLDLKAAADWPLPTKLVALSLLAVAIVAAGWWFDWRGGMEAVDAAKQKETELR CCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH SVFATKKNQAINLEAYRKQLTDIEQAFGALLKQLPNKQEMDALITDVNQAGLGRGLQFEL HHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEE FRPEAETVSEFYAETPIRVKVTGGYHDVAAFVSDVSKLSRIVTLHDIAMVPSKDLLNMDA ECCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCH TVKTYRYLDDEEVIARKQKTKEQPK HHHHHHHCCHHHHHHHHHHHCCCCC >Mature Secondary Structure TFDDLNNLDLKAAADWPLPTKLVALSLLAVAIVAAGWWFDWRGGMEAVDAAKQKETELR CCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH SVFATKKNQAINLEAYRKQLTDIEQAFGALLKQLPNKQEMDALITDVNQAGLGRGLQFEL HHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEE FRPEAETVSEFYAETPIRVKVTGGYHDVAAFVSDVSKLSRIVTLHDIAMVPSKDLLNMDA ECCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCH TVKTYRYLDDEEVIARKQKTKEQPK HHHHHHHCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA