Click here to switch to the map view.

The map label for this gene is ccsA [H]

Identifier: 74316203

GI number: 74316203

Start: 196827

End: 197966

Strand: Reverse

Name: ccsA [H]

Synonym: Tbd_0185

Alternate gene names: 74316203

Gene position: 197966-196827 (Counterclockwise)

Preceding gene: 74316204

Following gene: 74316202

Centisome position: 6.8

GC content: 63.25

Gene sequence:

>1140_bases
ATGGAACTCGCTCTCAACCATCCCGCCCCGCTTTTCAAGCGCCTTGCCTGGTTCGACTGGCTGTTCGCCGCCATCGTCGC
CGCCGGCGGCCTGTTCGCGCTCTCGCGCTTCGGCGAATACATGGACATCTACGAGAAAGGCATCCTGCTGGCGTCGATCC
CGGCACTCGCGGTGTTCGGTTGGTTCTGGAAGCCCTTCCGCCCGCTCTTCATCGTCGTCGGCGCACTCAGTCTTTTCGCG
ATCAGCCAATATCAGGGCGAACTCGGGCGCATGGAGGAGGCCTTCTTCCTCAAGTACCTGATCTCCAGCCAGGCCGCGAT
CATGTGGATGTGCGCGCTGTTCGGTCTCGCCACCGTCGCCTACTGGGGCGGCATGCTCGCGCGTTCCGAATTCACGATGA
AGACCGGCAGCAGCCTGACCTGGGCCGCGATCACGCTCGGCTACGTCGGTCTCATGGTGCGCTGGTACGAGTCCTATCTG
ATCGGCACCGACATCGGGCACATCCCGGTTTCCAATCTCTACGAAGTATTCGTCCTGTTCTGCCTGATCACGGCGATGAT
GTACCTCTACTACGAAGCCCGCTATCAGACGCGGACCATGGGCGCCTTCGTCCTGCTCGTGATCTCGGCCGCGGTCGGCT
TCATCCTCTGGTACACGCTCGACCGCGGTGCACATGAAATCCAGCCGCTGGTGCCCGCGCTCAAGTCGTGGTGGATGAAG
CTGCACGTCCCCGCGAACTTCATCGGCTACGGCGCATTTTCGATCGCGGCGATGCTCGGCGCGGCATATCTTCTCGCCGC
ACGCGGCATTCTCGCGACCCGCCTGCCACGGCTTGAGGTGATCGACGACGTCATGTACAAGGCCATCGCGATCGGCTTCG
CCTTCTTCACGATCGCGACCATCCTCGGCGCGATGTGGGCGGCCGAGGCTTGGGGTGGCTACTGGTCGTGGGACCCGAAG
GAGACCTGGGCGCTGATCGTGTGGCTGAACTACGCAGCCTGGCTGCACATCCGCCTGGTCAAGGGCCTGCGCGGGCCGAT
GCTCGCCTGGTGGGCGCTGGTCGGACTCTTCGTGACGACCTTCGCGTTCCTCGGCGTGAACATGTTCCTCTCCGGCCTGC
ACTCCTACGGCGAACTCTGA

Upstream 100 bases:

>100_bases
GCACACCATCGATTTCGAGACGGAATTCGCCGAACACGCCCGCGCGCTGGACGCGCTCGCCAAATAGGCACCGGGCTGCG
CATCATTTAGGAGACCCACC

Downstream 100 bases:

>100_bases
GCCGCCCGCTCCCGCGCGGCCGTCGTCGATGCGAAGCCCGTGGCGCTATGCGATTCCTCTCGCGCTCGCCGCGGGCGCCT
GGGTCGCGCAGAGGCAGTTC

Product: putative transmembrane cytochrome C-type biogenesis transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MELALNHPAPLFKRLAWFDWLFAAIVAAGGLFALSRFGEYMDIYEKGILLASIPALAVFGWFWKPFRPLFIVVGALSLFA
ISQYQGELGRMEEAFFLKYLISSQAAIMWMCALFGLATVAYWGGMLARSEFTMKTGSSLTWAAITLGYVGLMVRWYESYL
IGTDIGHIPVSNLYEVFVLFCLITAMMYLYYEARYQTRTMGAFVLLVISAAVGFILWYTLDRGAHEIQPLVPALKSWWMK
LHVPANFIGYGAFSIAAMLGAAYLLAARGILATRLPRLEVIDDVMYKAIAIGFAFFTIATILGAMWAAEAWGGYWSWDPK
ETWALIVWLNYAAWLHIRLVKGLRGPMLAWWALVGLFVTTFAFLGVNMFLSGLHSYGEL

Sequences:

>Translated_379_residues
MELALNHPAPLFKRLAWFDWLFAAIVAAGGLFALSRFGEYMDIYEKGILLASIPALAVFGWFWKPFRPLFIVVGALSLFA
ISQYQGELGRMEEAFFLKYLISSQAAIMWMCALFGLATVAYWGGMLARSEFTMKTGSSLTWAAITLGYVGLMVRWYESYL
IGTDIGHIPVSNLYEVFVLFCLITAMMYLYYEARYQTRTMGAFVLLVISAAVGFILWYTLDRGAHEIQPLVPALKSWWMK
LHVPANFIGYGAFSIAAMLGAAYLLAARGILATRLPRLEVIDDVMYKAIAIGFAFFTIATILGAMWAAEAWGGYWSWDPK
ETWALIVWLNYAAWLHIRLVKGLRGPMLAWWALVGLFVTTFAFLGVNMFLSGLHSYGEL
>Mature_379_residues
MELALNHPAPLFKRLAWFDWLFAAIVAAGGLFALSRFGEYMDIYEKGILLASIPALAVFGWFWKPFRPLFIVVGALSLFA
ISQYQGELGRMEEAFFLKYLISSQAAIMWMCALFGLATVAYWGGMLARSEFTMKTGSSLTWAAITLGYVGLMVRWYESYL
IGTDIGHIPVSNLYEVFVLFCLITAMMYLYYEARYQTRTMGAFVLLVISAAVGFILWYTLDRGAHEIQPLVPALKSWWMK
LHVPANFIGYGAFSIAAMLGAAYLLAARGILATRLPRLEVIDDVMYKAIAIGFAFFTIATILGAMWAAEAWGGYWSWDPK
ETWALIVWLNYAAWLHIRLVKGLRGPMLAWWALVGLFVTTFAFLGVNMFLSGLHSYGEL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 42624; Mature: 42624

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA