Click here to switch to the map view.

The map label for this gene is ybdD [H]

Identifier: 73543098

GI number: 73543098

Start: 3748058

End: 3748252

Strand: Reverse

Name: ybdD [H]

Synonym: Reut_A3416

Alternate gene names: 73543098

Gene position: 3748252-3748058 (Counterclockwise)

Preceding gene: 73543099

Following gene: 73543097

Centisome position: 98.47

GC content: 62.56

Gene sequence:

>195_bases
ATGCTGGAACAATTGGGAACAATGGGCCGCTATCTCGGGCAGTCTCTGCGGCTGATGGTCGGTCTGCCCGACTACCAGAC
CTATGTGGCTCACATGGAAAGCACCCACCCGGACCGCGAGCCGATGAGCTACGAGGAGTTCTTCCGGGAACGCCAGGAGG
CGCGGTACGGCGGCGGGCAGGGCAAGTGTTGCTGA

Upstream 100 bases:

>100_bases
GCGCCGTGAACCGCCCCACCGACAAGGAAACGCCGTTCGAGCCCCTGCCGGCGGCCGCCTCGGCGCAGTCCTGATACCGT
ATTGGCACAAGGAGCTGGCC

Downstream 100 bases:

>100_bases
TCCGGCCTCCCGCTGGCCACGGCCGGCGGTGAGTGGCTGATCAGGACGGGCAACTTTCGGGTTGCCCGTTTTTCTTTTGC
GGTGGCAAAGCGTCCGCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 64; Mature: 64

Protein sequence:

>64_residues
MLEQLGTMGRYLGQSLRLMVGLPDYQTYVAHMESTHPDREPMSYEEFFRERQEARYGGGQGKCC

Sequences:

>Translated_64_residues
MLEQLGTMGRYLGQSLRLMVGLPDYQTYVAHMESTHPDREPMSYEEFFRERQEARYGGGQGKCC
>Mature_64_residues
MLEQLGTMGRYLGQSLRLMVGLPDYQTYVAHMESTHPDREPMSYEEFFRERQEARYGGGQGKCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiX [H]

Homologues:

Organism=Escherichia coli, GI87081761, Length=65, Percent_Identity=60, Blast_Score=91, Evalue=1e-20,
Organism=Escherichia coli, GI1790813, Length=67, Percent_Identity=56.7164179104478, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007423 [H]

Pfam domain/function: PF04328 DUF466 [H]

EC number: NA

Molecular weight: Translated: 7437; Mature: 7437

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
7.8 %Met     (Translated Protein)
10.9 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
7.8 %Met     (Mature Protein)
10.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEQLGTMGRYLGQSLRLMVGLPDYQTYVAHMESTHPDREPMSYEEFFRERQEARYGGGQ
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
GKCC
CCCC
>Mature Secondary Structure
MLEQLGTMGRYLGQSLRLMVGLPDYQTYVAHMESTHPDREPMSYEEFFRERQEARYGGGQ
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
GKCC
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]