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The map label for this gene is atpD [H]

Identifier: 73543028

GI number: 73543028

Start: 3663692

End: 3665095

Strand: Reverse

Name: atpD [H]

Synonym: Reut_A3346

Alternate gene names: 73543028

Gene position: 3665095-3663692 (Counterclockwise)

Preceding gene: 73543029

Following gene: 73543027

Centisome position: 96.28

GC content: 62.18

Gene sequence:

>1404_bases
ATGAGTATCGGAAATATTGTGCAGTGCATTGGCGCCGTGGTGGACATCGAGTTCCCGCGCAACGCAATGCCGAAGGTGTA
CGACGCGCTGGTGCTGGAAGACAGCAGCGAAACGTCGTTTGCCGAAAAGGGCCTGACGTTCGAAGTCCAGCAGCAGCTGG
GCGACGGCGTGGTGCGTACCATTGCCCTCGGTTCGTCGGACGGCCTGCGCCGCGGCATGGCCGTGAAGAACACCGAAGCG
CCGATCTCGGTGCCGGTGGGTCAGGGCACGCTGGGCCGCATCATGGACGTGCTGGGTCGCCCCATCGACGAAGCTGGCCC
GATCGCTTCGGACGAGCGCCGCGCGATTCACCAGAAGGCACCGAAGTTCGACGAACTGTCGCCTTCGACCGACCTGCTCG
AAACCGGCATCAAGGTGATCGACCTGATCTGCCCGTTCGCAAAGGGCGGTAAGGTTGGCCTGTTCGGTGGTGCTGGCGTG
GGCAAGACCGTCAACATGATGGAGCTCATCAACAACATCGCCAAGCAGCACAGCGGTCTGTCGGTGTTCGCCGGCGTGGG
CGAGCGTACCCGTGAAGGGAACGACTTCTACCACGAAATGAAGGACTCCAACGTGCTCGACAAGGTGGCCATGGTGTTCG
GCCAGATGAACGAGCCGCCGGGCAACCGTCTGCGCGTGGCACTCTCCGGCCTGACCATGGCCGAGAAGTTCCGCGACGAA
GGCCGCGACATCCTGTTCTTCGTCGACAACATCTACCGCTACACGCTGGCCGGTACCGAAGTGTCGGCACTGCTGGGCCG
TATGCCTTCCGCCGTGGGCTACCAGCCGACGCTGGCTGAAGAAATGGGCAAGCTGCAGGAACGTATTACGTCGACCAAGA
CTGGCTCGATCACGTCGATCCAGGCCGTGTACGTGCCTGCGGATGACTTGACCGACCCGTCGCCGGCAACCACCTTCCTG
CACCTGGACTCGACCCTCGTGCTGTCGCGTGACATCGCTGCGCTCGGTATCTACCCCGCAGTGGATCCGCTGGACTCGAC
CTCGCGCCAGATGGACCCGCAGGTTGTGGGCCAGGAGCACTACAATGTCGCGCGTGCCGTTCAGCAGACGCTGCAGCGCT
ACAAGGAACTGCGCGACATCATCGCGATTCTGGGCATGGACGAACTGTCGCCGGAAGACAAGATGGCCGTGAACCGCGCG
CGTAAGATCCAGCGTTTCCTGTCGCAGCCGTTCCACGTGGCCGAAGTGTTCACGGGTTCGCCGGGCAAGTACGTGCCGCT
GAAGGAAACCATCCGTGGTTTCAAGATGCTGGTGGATGGCGAGTGCGATCACCTGCCCGAGCAGGCGTTCTACATGGTCG
GCTCGATCGACGAAGCCTTCGAGAAGGCCAAGAAGCTCCAGTAA

Upstream 100 bases:

>100_bases
CAAGACCCGTCAGGCAGCGATCACCAAGGAACTGTCGGAAATCGTCAGCGGTGCGGCAGCCGTCTAAGGCGTCAAGAATT
CAAGCTATCGGAGATACGAA

Downstream 100 bases:

>100_bases
GCCTCGCTTTGACGCTCCCGCACCCCGGTGCGGGAGTGGCGGCCGGCCGCCTTGCGCGCCCGGCCGTCAGAAGTGAAGCG
AACGGACAAAGGAATTCATA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MSIGNIVQCIGAVVDIEFPRNAMPKVYDALVLEDSSETSFAEKGLTFEVQQQLGDGVVRTIALGSSDGLRRGMAVKNTEA
PISVPVGQGTLGRIMDVLGRPIDEAGPIASDERRAIHQKAPKFDELSPSTDLLETGIKVIDLICPFAKGGKVGLFGGAGV
GKTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALSGLTMAEKFRDE
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFL
HLDSTLVLSRDIAALGIYPAVDPLDSTSRQMDPQVVGQEHYNVARAVQQTLQRYKELRDIIAILGMDELSPEDKMAVNRA
RKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ

Sequences:

>Translated_467_residues
MSIGNIVQCIGAVVDIEFPRNAMPKVYDALVLEDSSETSFAEKGLTFEVQQQLGDGVVRTIALGSSDGLRRGMAVKNTEA
PISVPVGQGTLGRIMDVLGRPIDEAGPIASDERRAIHQKAPKFDELSPSTDLLETGIKVIDLICPFAKGGKVGLFGGAGV
GKTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALSGLTMAEKFRDE
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFL
HLDSTLVLSRDIAALGIYPAVDPLDSTSRQMDPQVVGQEHYNVARAVQQTLQRYKELRDIIAILGMDELSPEDKMAVNRA
RKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ
>Mature_466_residues
SIGNIVQCIGAVVDIEFPRNAMPKVYDALVLEDSSETSFAEKGLTFEVQQQLGDGVVRTIALGSSDGLRRGMAVKNTEAP
ISVPVGQGTLGRIMDVLGRPIDEAGPIASDERRAIHQKAPKFDELSPSTDLLETGIKVIDLICPFAKGGKVGLFGGAGVG
KTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALSGLTMAEKFRDEG
RDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFLH
LDSTLVLSRDIAALGIYPAVDPLDSTSRQMDPQVVGQEHYNVARAVQQTLQRYKELRDIIAILGMDELSPEDKMAVNRAR
KIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=472, Percent_Identity=66.5254237288136, Blast_Score=628, Evalue=1e-180,
Organism=Homo sapiens, GI50345984, Length=388, Percent_Identity=25, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI4757810, Length=388, Percent_Identity=25, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI19913424, Length=320, Percent_Identity=26.25, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI19913428, Length=429, Percent_Identity=24.9417249417249, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI19913426, Length=362, Percent_Identity=24.0331491712707, Blast_Score=95, Evalue=1e-19,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=79.3991416309013, Blast_Score=763, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=305, Percent_Identity=30.8196721311475, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1790172, Length=382, Percent_Identity=25.3926701570681, Blast_Score=116, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI25144756, Length=470, Percent_Identity=66.1702127659574, Blast_Score=624, Evalue=1e-179,
Organism=Caenorhabditis elegans, GI71988080, Length=381, Percent_Identity=25.9842519685039, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI71988063, Length=381, Percent_Identity=25.9842519685039, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17510931, Length=343, Percent_Identity=25.3644314868805, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17565854, Length=315, Percent_Identity=26.984126984127, Blast_Score=105, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17570191, Length=361, Percent_Identity=23.8227146814404, Blast_Score=102, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=385, Percent_Identity=24.4155844155844, Blast_Score=97, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322581, Length=461, Percent_Identity=64.6420824295011, Blast_Score=604, Evalue=1e-174,
Organism=Saccharomyces cerevisiae, GI6319370, Length=442, Percent_Identity=24.8868778280543, Blast_Score=111, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6319603, Length=376, Percent_Identity=24.7340425531915, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6320016, Length=233, Percent_Identity=24.4635193133047, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=65.531914893617, Blast_Score=620, Evalue=1e-178,
Organism=Drosophila melanogaster, GI28574560, Length=470, Percent_Identity=62.3404255319149, Blast_Score=583, Evalue=1e-167,
Organism=Drosophila melanogaster, GI281361666, Length=420, Percent_Identity=24.7619047619048, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24646341, Length=420, Percent_Identity=24.7619047619048, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI17136796, Length=420, Percent_Identity=24.7619047619048, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI20129479, Length=314, Percent_Identity=27.0700636942675, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24658560, Length=381, Percent_Identity=24.6719160104987, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24583988, Length=351, Percent_Identity=25.0712250712251, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24583986, Length=351, Percent_Identity=25.0712250712251, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24583984, Length=351, Percent_Identity=25.0712250712251, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24583992, Length=322, Percent_Identity=26.0869565217391, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=45.360824742268, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50988; Mature: 50857

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIGNIVQCIGAVVDIEFPRNAMPKVYDALVLEDSSETSFAEKGLTFEVQQQLGDGVVRT
CCHHHHHHHHHHHEECCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHCCCCEEH
IALGSSDGLRRGMAVKNTEAPISVPVGQGTLGRIMDVLGRPIDEAGPIASDERRAIHQKA
EEECCCCCHHCCCEECCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
PKFDELSPSTDLLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGL
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
SVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALSGLTMAEKFRDE
EEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHC
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSI
CCEEEEEEHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
QAVYVPADDLTDPSPATTFLHLDSTLVLSRDIAALGIYPAVDPLDSTSRQMDPQVVGQEH
EEEEECCCCCCCCCCCEEEEEECCEEEHHCCHHHHCCCCCCCCCCCHHHHCCHHHHCHHH
YNVARAVQQTLQRYKELRDIIAILGMDELSPEDKMAVNRARKIQRFLSQPFHVAEVFTGS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHEECC
PGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ
CCCCCCHHHHHHHHHEEECCCCCCCCHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
SIGNIVQCIGAVVDIEFPRNAMPKVYDALVLEDSSETSFAEKGLTFEVQQQLGDGVVRT
CHHHHHHHHHHHEECCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHCCCCEEH
IALGSSDGLRRGMAVKNTEAPISVPVGQGTLGRIMDVLGRPIDEAGPIASDERRAIHQKA
EEECCCCCHHCCCEECCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
PKFDELSPSTDLLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGL
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
SVFAGVGERTREGNDFYHEMKDSNVLDKVAMVFGQMNEPPGNRLRVALSGLTMAEKFRDE
EEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHC
GRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSI
CCEEEEEEHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
QAVYVPADDLTDPSPATTFLHLDSTLVLSRDIAALGIYPAVDPLDSTSRQMDPQVVGQEH
EEEEECCCCCCCCCCCEEEEEECCEEEHHCCHHHHCCCCCCCCCCCHHHHCCHHHHCHHH
YNVARAVQQTLQRYKELRDIIAILGMDELSPEDKMAVNRARKIQRFLSQPFHVAEVFTGS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHEECC
PGKYVPLKETIRGFKMLVDGECDHLPEQAFYMVGSIDEAFEKAKKLQ
CCCCCCHHHHHHHHHEEECCCCCCCCHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA