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The map label for this gene is ybcK [H]

Identifier: 73542993

GI number: 73542993

Start: 3619050

End: 3620819

Strand: Direct

Name: ybcK [H]

Synonym: Reut_A3310

Alternate gene names: 73542993

Gene position: 3619050-3620819 (Clockwise)

Preceding gene: 73542991

Following gene: 73542994

Centisome position: 95.07

GC content: 57.46

Gene sequence:

>1770_bases
ATGCCACGGGCCTATAACTACACGCGTTTCAGCCATCCTTCACAGGCGCTAGGCCAGTCGGAGCAACGGCAGATTGAGCT
ATGCGAACAGTATTGCCGGGTGCATGGCCTTACTCTCGTGCGTGACTCTGAATACACATTTCTTGATAGGGGCCGATCCG
CATTCTTAGGCGCCCACCTTGACGACGGCGCAGAGTTGAGCCGATTCCTGAAGCTTGTGGAGGATGGCACGATCCCGGCT
GGAAGCTGGCTGATTTGCGAATCCCTCGACCGTCTATCACGCCAAGACTCTTGGACGGCTATGAAGCTGCTAGGCGGCAT
CGTTGAGAGCGGTATCACTGTCGTCACCCTGAACAACGGGGAAGTCTTCGCGGACATGAAGGACGCCCGCAAGCTCATCA
TGGCAGTCCTCGACTCGTCCCGTGCCAACTCCGAATCCAGCCACAAATCCAGCCGCTTGCGGCAGGCATACCAAAAGAAG
CGCGACGCCGCCAGCGATGGCAAGGCAGTCTTCACGAAGCAAGTTCCCATGTGGCTCAAGCTCAAGGCAGACCGCTCCGG
CTATGACCTTGTGCCGGAGTTCGTAGAGACGGTGCGCATGATCTTTGACCTTACGATCACGCACGGCAAAAACAAGGTTG
CGCAACTTCTGAATGAAGCTGGCAGGCCAACATTTAAGCCCAGCGTCAATGGCTGGGGTACTTCTGCTGTCAGCCATGTC
CTGAACAACCGTGCTGTACTGGGCGAGTTTCAGCCCATGAGCAAGCTGGACGATCCCAAACGTAGAAAGCGCAAGCCGGT
AGGCGAGCCCATCAAGAAATACTTCCCGGCGATCATTGACGAAACCACCTACTACCGTGCACAGGACGCTGTAGCGGGTA
GGCGCACAGCCAAAGCTACCAAGCAGTCAGTCAAATTTAACGTCTGGCAGAAGGTTGCCCGCTGCATCCACTGCGGATCA
CCCATGCACATGGTGAACAAGGGTCGCGCGCCCAAGGGCCAGACCTACATAGAATGCAGCATTGGGAGAAAGGGTCTGTG
CGAGTCCCACAAGCTGATCCGTCTTGACCATTCGGAACAGGTCTTCCGTGCAATCCTAGCCTGTCTCGATTCCATGTCCC
TTGTTCGAGATTCCGGTGGCAAGCTGGCTAAAGACTTGGCTGCAATCAACGGGCGCATAGCGGAACAGGAAGCCAAACTG
AGCAAGGCTGTAGCAGCGTTTGACGCTGAGCCCTCCCCCGACATTGCCGCTGCGGTGCGTCGTATGCGTGAAACCCTTAC
GGAACTCACGAACCAGCGGGAGCACACACAGGGAGAGTTGGCCGCTGAGGACGCGATTGACTACAAAGAATTCATGCGGA
GGTTAGACCTCGAATCCCCCGAGGGCCGTGCCGCCGCTAATGCTCTGCTGCAACGCTTGAAAGTTCTGGTGTTTGCCGAC
CGTGGCGAGGATGCACGGAACCCCTCTAGCTCCTACGTGGTGACGCAAGACGGTGAGCCGCGTTTTGCTGTGGCCTATGC
TGATGGCAAGGCGGGATACAGGAAGCTGAGCCCATGGAAGCACGCCCGACCGTGGATGATCCAACGGGGCAACCCACATG
GCCCCTTGCTCCCTCTGCATATGTCAGCAGCTACGGCACTGAAACATGCTGGCCCTGTCCACTTCGAACCGCCGAAGGAA
GCCGGGTCTAGAGCGTATGAGATTGAGGAAGATGCGGACGCCCGCCGACAGGCGGATGCGGATGAGGACTACTGGCCTAT
CCAAGAGTGA

Upstream 100 bases:

>100_bases
GGTCGGGCGCGAGCGAAGACGTGCGCACGTCGTAGCGCAGATGCACCGCGTTAGACACCTTGTTAATATTGTCAGGTAAA
TCCACCTACACGCCAACACC

Downstream 100 bases:

>100_bases
TGCAGAGAAGCCACCAGAGCGGCTGAGATACGTTTTCTGTGCTGGTGGCTACCCTTGCCTACCCTATGCACTTGCAAGCG
ATCCCAGAGGCACTGCTTGC

Product: recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 589; Mature: 588

Protein sequence:

>589_residues
MPRAYNYTRFSHPSQALGQSEQRQIELCEQYCRVHGLTLVRDSEYTFLDRGRSAFLGAHLDDGAELSRFLKLVEDGTIPA
GSWLICESLDRLSRQDSWTAMKLLGGIVESGITVVTLNNGEVFADMKDARKLIMAVLDSSRANSESSHKSSRLRQAYQKK
RDAASDGKAVFTKQVPMWLKLKADRSGYDLVPEFVETVRMIFDLTITHGKNKVAQLLNEAGRPTFKPSVNGWGTSAVSHV
LNNRAVLGEFQPMSKLDDPKRRKRKPVGEPIKKYFPAIIDETTYYRAQDAVAGRRTAKATKQSVKFNVWQKVARCIHCGS
PMHMVNKGRAPKGQTYIECSIGRKGLCESHKLIRLDHSEQVFRAILACLDSMSLVRDSGGKLAKDLAAINGRIAEQEAKL
SKAVAAFDAEPSPDIAAAVRRMRETLTELTNQREHTQGELAAEDAIDYKEFMRRLDLESPEGRAAANALLQRLKVLVFAD
RGEDARNPSSSYVVTQDGEPRFAVAYADGKAGYRKLSPWKHARPWMIQRGNPHGPLLPLHMSAATALKHAGPVHFEPPKE
AGSRAYEIEEDADARRQADADEDYWPIQE

Sequences:

>Translated_589_residues
MPRAYNYTRFSHPSQALGQSEQRQIELCEQYCRVHGLTLVRDSEYTFLDRGRSAFLGAHLDDGAELSRFLKLVEDGTIPA
GSWLICESLDRLSRQDSWTAMKLLGGIVESGITVVTLNNGEVFADMKDARKLIMAVLDSSRANSESSHKSSRLRQAYQKK
RDAASDGKAVFTKQVPMWLKLKADRSGYDLVPEFVETVRMIFDLTITHGKNKVAQLLNEAGRPTFKPSVNGWGTSAVSHV
LNNRAVLGEFQPMSKLDDPKRRKRKPVGEPIKKYFPAIIDETTYYRAQDAVAGRRTAKATKQSVKFNVWQKVARCIHCGS
PMHMVNKGRAPKGQTYIECSIGRKGLCESHKLIRLDHSEQVFRAILACLDSMSLVRDSGGKLAKDLAAINGRIAEQEAKL
SKAVAAFDAEPSPDIAAAVRRMRETLTELTNQREHTQGELAAEDAIDYKEFMRRLDLESPEGRAAANALLQRLKVLVFAD
RGEDARNPSSSYVVTQDGEPRFAVAYADGKAGYRKLSPWKHARPWMIQRGNPHGPLLPLHMSAATALKHAGPVHFEPPKE
AGSRAYEIEEDADARRQADADEDYWPIQE
>Mature_588_residues
PRAYNYTRFSHPSQALGQSEQRQIELCEQYCRVHGLTLVRDSEYTFLDRGRSAFLGAHLDDGAELSRFLKLVEDGTIPAG
SWLICESLDRLSRQDSWTAMKLLGGIVESGITVVTLNNGEVFADMKDARKLIMAVLDSSRANSESSHKSSRLRQAYQKKR
DAASDGKAVFTKQVPMWLKLKADRSGYDLVPEFVETVRMIFDLTITHGKNKVAQLLNEAGRPTFKPSVNGWGTSAVSHVL
NNRAVLGEFQPMSKLDDPKRRKRKPVGEPIKKYFPAIIDETTYYRAQDAVAGRRTAKATKQSVKFNVWQKVARCIHCGSP
MHMVNKGRAPKGQTYIECSIGRKGLCESHKLIRLDHSEQVFRAILACLDSMSLVRDSGGKLAKDLAAINGRIAEQEAKLS
KAVAAFDAEPSPDIAAAVRRMRETLTELTNQREHTQGELAAEDAIDYKEFMRRLDLESPEGRAAANALLQRLKVLVFADR
GEDARNPSSSYVVTQDGEPRFAVAYADGKAGYRKLSPWKHARPWMIQRGNPHGPLLPLHMSAATALKHAGPVHFEPPKEA
GSRAYEIEEDADARRQADADEDYWPIQE

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786756, Length=478, Percent_Identity=28.6610878661088, Blast_Score=164, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 65790; Mature: 65659

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRAYNYTRFSHPSQALGQSEQRQIELCEQYCRVHGLTLVRDSEYTFLDRGRSAFLGAHL
CCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHCCCCCEECCCC
DDGAELSRFLKLVEDGTIPAGSWLICESLDRLSRQDSWTAMKLLGGIVESGITVVTLNNG
CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCC
EVFADMKDARKLIMAVLDSSRANSESSHKSSRLRQAYQKKRDAASDGKAVFTKQVPMWLK
EEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEE
LKADRSGYDLVPEFVETVRMIFDLTITHGKNKVAQLLNEAGRPTFKPSVNGWGTSAVSHV
EECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
LNNRAVLGEFQPMSKLDDPKRRKRKPVGEPIKKYFPAIIDETTYYRAQDAVAGRRTAKAT
HCCCCEECCCCCHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KQSVKFNVWQKVARCIHCGSPMHMVNKGRAPKGQTYIECSIGRKGLCESHKLIRLDHSEQ
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEECCHHH
VFRAILACLDSMSLVRDSGGKLAKDLAAINGRIAEQEAKLSKAVAAFDAEPSPDIAAAVR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RMRETLTELTNQREHTQGELAAEDAIDYKEFMRRLDLESPEGRAAANALLQRLKVLVFAD
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEC
RGEDARNPSSSYVVTQDGEPRFAVAYADGKAGYRKLSPWKHARPWMIQRGNPHGPLLPLH
CCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEH
MSAATALKHAGPVHFEPPKEAGSRAYEIEEDADARRQADADEDYWPIQE
HHHHHHHHHCCCCCCCCCHHHCCCCEECCCHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PRAYNYTRFSHPSQALGQSEQRQIELCEQYCRVHGLTLVRDSEYTFLDRGRSAFLGAHL
CCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHCCCCCEECCCC
DDGAELSRFLKLVEDGTIPAGSWLICESLDRLSRQDSWTAMKLLGGIVESGITVVTLNNG
CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCC
EVFADMKDARKLIMAVLDSSRANSESSHKSSRLRQAYQKKRDAASDGKAVFTKQVPMWLK
EEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEE
LKADRSGYDLVPEFVETVRMIFDLTITHGKNKVAQLLNEAGRPTFKPSVNGWGTSAVSHV
EECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
LNNRAVLGEFQPMSKLDDPKRRKRKPVGEPIKKYFPAIIDETTYYRAQDAVAGRRTAKAT
HCCCCEECCCCCHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KQSVKFNVWQKVARCIHCGSPMHMVNKGRAPKGQTYIECSIGRKGLCESHKLIRLDHSEQ
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEECCHHH
VFRAILACLDSMSLVRDSGGKLAKDLAAINGRIAEQEAKLSKAVAAFDAEPSPDIAAAVR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
RMRETLTELTNQREHTQGELAAEDAIDYKEFMRRLDLESPEGRAAANALLQRLKVLVFAD
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEC
RGEDARNPSSSYVVTQDGEPRFAVAYADGKAGYRKLSPWKHARPWMIQRGNPHGPLLPLH
CCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEH
MSAATALKHAGPVHFEPPKEAGSRAYEIEEDADARRQADADEDYWPIQE
HHHHHHHHHCCCCCCCCCHHHCCCCEECCCHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]