Click here to switch to the map view.

The map label for this gene is bfrD [H]

Identifier: 73542563

GI number: 73542563

Start: 3152819

End: 3154942

Strand: Reverse

Name: bfrD [H]

Synonym: Reut_A2878

Alternate gene names: 73542563

Gene position: 3154942-3152819 (Counterclockwise)

Preceding gene: 73542564

Following gene: 73542558

Centisome position: 82.88

GC content: 64.69

Gene sequence:

>2124_bases
ATGAGCCTTAAACTGCATCCGGTCCACCGTGCCGTTCTGACGGTATTCGCCTGCCAGCCCATGCTCGCGGGCATCGCCCT
CGCACAGGAGGCCGGCGTCGCCGCGCCGTCCCAGCAAAGCCTTCCGGAGGTCACGGTGAGGGCCGATGCCAGCCAGGACC
TTGGCACTGGCTACAACCCGTCCAAAACCGTCAGCGCGACCAAGATCGAGGCGCCGCTGCGTGACGTGCCGCAGACGGTC
AACGTGGTCACGGCCGATGTCATGCGCGACCAGCATGCCAGCTCCATGCAGGACGCCCTGAAGAACGTGCCGGGGGTGTC
GTTCTCCACTGGCGACGGCCAGCGGGACCAGGTGTCGATCCGCGGCTTCACGGCGATTGCCGACCAGTTTGTCGACGGCA
TCCGTGACGACGCGCTGTACTTCCGCGACCTGTCCAACGTGGACCGCGTCGAAGTCATCAAGGGGCCGGCGGCTGTGCTC
TATGGCCGCGGCTCCTCGGGCGGCCTGATCAACCGCGTGACCAAGAAGCCGGGCGTCGACGTGACCGACTTCGCGCTGAG
CTACGGCATGTGGGCCGACCGACGCGCGGAAGCCGACGTCGGCCGCGTGTTCGCCGACGGCGCGGCTGCGTTCCGTGTGA
CGGGCGCCGTGGAAAAGGCCAACAGCTATCGCTCGCGGCAGTTTCTCGATCGCAAGGCCATTGCGCCGTCGCTCGAACTG
CGCATCGCGCCCGAGACCACGGTGCTGTTGCAGGCCGACTATCTAGAGGATCGTCGCGTCACCGACTTCGGCATCCCGGC
GTACAAGGGCCGGCCGGTCGACGTGCCGGCATCGCGCTACTACGGCGCGGCCAATGCGCGCGACGCTGATTACTCGCAGT
CGCGTGTGTACTCGGGCACGGCCACGATCAACCACCGCTTCAACGACAGCTGGTCGATCCGCAATGCGACGCGCTATTAC
CACTATTCGCTGGACCGGAACAACACGCTGACCAGCGCGGTCAACGAGGCGGCGCAGACCTTCACGATGAACCACGGCAA
TGTCGGCCGCGAAGAGCATGGCTGGTTCAACCAGACCGACCTGACGCAGAAGGCCAGCGTCTTCGGCATGCAGCATGAAT
TGCTGTACGGCATGGAAATCGGCCAGCAGAACAAGAACCAGGTCAACAACACCAAGCCTGTGCCGGGCAGCTTCGACCTG
TTCAACCCGGTGCTGCCGACGCTGGCGCGCGTGGCCCCGGGCACGCCGACCACCAACAACCTGGGCGTGTTCAATACCCT
GGCGTTCTATACGCAGGACATGGTCACGTTCAGCGAGCAATGGAAGGCGCTGGTGGGCTTGCGCTACGACCACTTCGAGC
AGCAAACGCTGCAGAACATTGCCGGGCTGCAGAACCTTTCGCGCACGGACAATGCCTGGAGCCCGCGTGCGGGCCTGGTG
TGGCAGCCGTCGAAGGCGCAGTCGTACTACGTGTCGTGGAGCAAGTCGTTCCAGCCGTCCGGCGAGGCCTTCGCGCTGGC
GGCCAACAATACGCAGCTCGCCCCGGAAACCACCAACAACACCGAAGTGGGCGCCAAGTATGACTTCCTCGATGGCAAGG
CCAGCGCCACGGTCTCGGTCTTCCGCCTCGAGCGCACCAATATCAAGGTGGCCAATGCCACCAATACGGCGCTGATCCCG
ATCGGCGAACAGCGTACCGACGGCGTGGAGATCTCGGGTGCCGCGGAACTGGGCAGCGGCTGGCGCTTCCTGGCGGGCTA
CGCCTACCTGGACGCCGAAGTGACCAAGTCGACCGCCGCGCTGCAGGGCAAGCGCGCAACGATCACGCCAAAGCATTCAG
GCAATGTCTGGCTGACGAAGAGCCTTGGGTATGGCTTTGGCGTGGGCGCCGGCCTGAACCTCGTAGGCGCGCGCTACGCC
GATCCGCTCAACACCGTCACGCTGCCCGGCTACGTGACGGCCGACATGATGGCGTGGTACCGCCATGGCGCGTTTGAAGC
CCAGCTGAACCTGTACAACCTGTTCGACAAGAGCTACATCGTTTCGGCGCATGGCAATAACCCGAACCTGAACATGCCGG
GTGCGCCCCGCAGCGTGATGGCGACGATTCGCTATCGGATGTAA

Upstream 100 bases:

>100_bases
ATACCAAAGAGGACATTTATCCCCATATTTGACGCCTCCGCTCCTTGTAAATGATAATGCTTCGCATTTTATCGAAAGCA
TTACAAAAAATTACAGGGAA

Downstream 100 bases:

>100_bases
GCGAGTCGGCGGTCAGCAAAAAGGGCCGGGCGGTGATTCACCGCCCGGCCCTTTTTTCGCTTCCGTGACCAGACTTTCGG
CTTACGTCTCGCTCCACTGC

Product: TonB-dependent siderophore receptor

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 707; Mature: 706

Protein sequence:

>707_residues
MSLKLHPVHRAVLTVFACQPMLAGIALAQEAGVAAPSQQSLPEVTVRADASQDLGTGYNPSKTVSATKIEAPLRDVPQTV
NVVTADVMRDQHASSMQDALKNVPGVSFSTGDGQRDQVSIRGFTAIADQFVDGIRDDALYFRDLSNVDRVEVIKGPAAVL
YGRGSSGGLINRVTKKPGVDVTDFALSYGMWADRRAEADVGRVFADGAAAFRVTGAVEKANSYRSRQFLDRKAIAPSLEL
RIAPETTVLLQADYLEDRRVTDFGIPAYKGRPVDVPASRYYGAANARDADYSQSRVYSGTATINHRFNDSWSIRNATRYY
HYSLDRNNTLTSAVNEAAQTFTMNHGNVGREEHGWFNQTDLTQKASVFGMQHELLYGMEIGQQNKNQVNNTKPVPGSFDL
FNPVLPTLARVAPGTPTTNNLGVFNTLAFYTQDMVTFSEQWKALVGLRYDHFEQQTLQNIAGLQNLSRTDNAWSPRAGLV
WQPSKAQSYYVSWSKSFQPSGEAFALAANNTQLAPETTNNTEVGAKYDFLDGKASATVSVFRLERTNIKVANATNTALIP
IGEQRTDGVEISGAAELGSGWRFLAGYAYLDAEVTKSTAALQGKRATITPKHSGNVWLTKSLGYGFGVGAGLNLVGARYA
DPLNTVTLPGYVTADMMAWYRHGAFEAQLNLYNLFDKSYIVSAHGNNPNLNMPGAPRSVMATIRYRM

Sequences:

>Translated_707_residues
MSLKLHPVHRAVLTVFACQPMLAGIALAQEAGVAAPSQQSLPEVTVRADASQDLGTGYNPSKTVSATKIEAPLRDVPQTV
NVVTADVMRDQHASSMQDALKNVPGVSFSTGDGQRDQVSIRGFTAIADQFVDGIRDDALYFRDLSNVDRVEVIKGPAAVL
YGRGSSGGLINRVTKKPGVDVTDFALSYGMWADRRAEADVGRVFADGAAAFRVTGAVEKANSYRSRQFLDRKAIAPSLEL
RIAPETTVLLQADYLEDRRVTDFGIPAYKGRPVDVPASRYYGAANARDADYSQSRVYSGTATINHRFNDSWSIRNATRYY
HYSLDRNNTLTSAVNEAAQTFTMNHGNVGREEHGWFNQTDLTQKASVFGMQHELLYGMEIGQQNKNQVNNTKPVPGSFDL
FNPVLPTLARVAPGTPTTNNLGVFNTLAFYTQDMVTFSEQWKALVGLRYDHFEQQTLQNIAGLQNLSRTDNAWSPRAGLV
WQPSKAQSYYVSWSKSFQPSGEAFALAANNTQLAPETTNNTEVGAKYDFLDGKASATVSVFRLERTNIKVANATNTALIP
IGEQRTDGVEISGAAELGSGWRFLAGYAYLDAEVTKSTAALQGKRATITPKHSGNVWLTKSLGYGFGVGAGLNLVGARYA
DPLNTVTLPGYVTADMMAWYRHGAFEAQLNLYNLFDKSYIVSAHGNNPNLNMPGAPRSVMATIRYRM
>Mature_706_residues
SLKLHPVHRAVLTVFACQPMLAGIALAQEAGVAAPSQQSLPEVTVRADASQDLGTGYNPSKTVSATKIEAPLRDVPQTVN
VVTADVMRDQHASSMQDALKNVPGVSFSTGDGQRDQVSIRGFTAIADQFVDGIRDDALYFRDLSNVDRVEVIKGPAAVLY
GRGSSGGLINRVTKKPGVDVTDFALSYGMWADRRAEADVGRVFADGAAAFRVTGAVEKANSYRSRQFLDRKAIAPSLELR
IAPETTVLLQADYLEDRRVTDFGIPAYKGRPVDVPASRYYGAANARDADYSQSRVYSGTATINHRFNDSWSIRNATRYYH
YSLDRNNTLTSAVNEAAQTFTMNHGNVGREEHGWFNQTDLTQKASVFGMQHELLYGMEIGQQNKNQVNNTKPVPGSFDLF
NPVLPTLARVAPGTPTTNNLGVFNTLAFYTQDMVTFSEQWKALVGLRYDHFEQQTLQNIAGLQNLSRTDNAWSPRAGLVW
QPSKAQSYYVSWSKSFQPSGEAFALAANNTQLAPETTNNTEVGAKYDFLDGKASATVSVFRLERTNIKVANATNTALIPI
GEQRTDGVEISGAAELGSGWRFLAGYAYLDAEVTKSTAALQGKRATITPKHSGNVWLTKSLGYGFGVGAGLNLVGARYAD
PLNTVTLPGYVTADMMAWYRHGAFEAQLNLYNLFDKSYIVSAHGNNPNLNMPGAPRSVMATIRYRM

Specific function: Probably involved in iron transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=759, Percent_Identity=26.8774703557312, Blast_Score=194, Evalue=2e-50,
Organism=Escherichia coli, GI1786344, Length=762, Percent_Identity=25.3280839895013, Blast_Score=187, Evalue=3e-48,
Organism=Escherichia coli, GI1787344, Length=741, Percent_Identity=26.4507422402159, Blast_Score=157, Evalue=3e-39,
Organism=Escherichia coli, GI1787723, Length=674, Percent_Identity=22.5519287833828, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1788478, Length=127, Percent_Identity=33.0708661417323, Blast_Score=76, Evalue=9e-15,
Organism=Escherichia coli, GI1790743, Length=295, Percent_Identity=25.0847457627119, Blast_Score=73, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 77165; Mature: 77034

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKLHPVHRAVLTVFACQPMLAGIALAQEAGVAAPSQQSLPEVTVRADASQDLGTGYNP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
SKTVSATKIEAPLRDVPQTVNVVTADVMRDQHASSMQDALKNVPGVSFSTGDGQRDQVSI
CCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEE
RGFTAIADQFVDGIRDDALYFRDLSNVDRVEVIKGPAAVLYGRGSSGGLINRVTKKPGVD
CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCHHHHHHCCCCCC
VTDFALSYGMWADRRAEADVGRVFADGAAAFRVTGAVEKANSYRSRQFLDRKAIAPSLEL
HHHHHHHHCCCCCCCCCCCHHHEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEE
RIAPETTVLLQADYLEDRRVTDFGIPAYKGRPVDVPASRYYGAANARDADYSQSRVYSGT
EECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEECE
ATINHRFNDSWSIRNATRYYHYSLDRNNTLTSAVNEAAQTFTMNHGNVGREEHGWFNQTD
EEEEECCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCC
LTQKASVFGMQHELLYGMEIGQQNKNQVNNTKPVPGSFDLFNPVLPTLARVAPGTPTTNN
CHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
LGVFNTLAFYTQDMVTFSEQWKALVGLRYDHFEQQTLQNIAGLQNLSRTDNAWSPRAGLV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
WQPSKAQSYYVSWSKSFQPSGEAFALAANNTQLAPETTNNTEVGAKYDFLDGKASATVSV
ECCCCCCEEEEEECCCCCCCCCEEEEEECCCEECCCCCCCCCCCEEEECCCCCCCCEEEE
FRLERTNIKVANATNTALIPIGEQRTDGVEISGAAELGSGWRFLAGYAYLDAEVTKSTAA
EEEEECEEEEEECCCEEEEECCCCCCCCEEEECHHHCCCCCEEEHEEEEEEHHHHHHHHH
LQGKRATITPKHSGNVWLTKSLGYGFGVGAGLNLVGARYADPLNTVTLPGYVTADMMAWY
HCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHH
RHGAFEAQLNLYNLFDKSYIVSAHGNNPNLNMPGAPRSVMATIRYRM
HCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHEEEECC
>Mature Secondary Structure 
SLKLHPVHRAVLTVFACQPMLAGIALAQEAGVAAPSQQSLPEVTVRADASQDLGTGYNP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
SKTVSATKIEAPLRDVPQTVNVVTADVMRDQHASSMQDALKNVPGVSFSTGDGQRDQVSI
CCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEE
RGFTAIADQFVDGIRDDALYFRDLSNVDRVEVIKGPAAVLYGRGSSGGLINRVTKKPGVD
CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCHHHHHHCCCCCC
VTDFALSYGMWADRRAEADVGRVFADGAAAFRVTGAVEKANSYRSRQFLDRKAIAPSLEL
HHHHHHHHCCCCCCCCCCCHHHEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEE
RIAPETTVLLQADYLEDRRVTDFGIPAYKGRPVDVPASRYYGAANARDADYSQSRVYSGT
EECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEECE
ATINHRFNDSWSIRNATRYYHYSLDRNNTLTSAVNEAAQTFTMNHGNVGREEHGWFNQTD
EEEEECCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCC
LTQKASVFGMQHELLYGMEIGQQNKNQVNNTKPVPGSFDLFNPVLPTLARVAPGTPTTNN
CHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
LGVFNTLAFYTQDMVTFSEQWKALVGLRYDHFEQQTLQNIAGLQNLSRTDNAWSPRAGLV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
WQPSKAQSYYVSWSKSFQPSGEAFALAANNTQLAPETTNNTEVGAKYDFLDGKASATVSV
ECCCCCCEEEEEECCCCCCCCCEEEEEECCCEECCCCCCCCCCCEEEECCCCCCCCEEEE
FRLERTNIKVANATNTALIPIGEQRTDGVEISGAAELGSGWRFLAGYAYLDAEVTKSTAA
EEEEECEEEEEECCCEEEEECCCCCCCCEEEECHHHCCCCCEEEHEEEEEEHHHHHHHHH
LQGKRATITPKHSGNVWLTKSLGYGFGVGAGLNLVGARYADPLNTVTLPGYVTADMMAWY
HCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHH
RHGAFEAQLNLYNLFDKSYIVSAHGNNPNLNMPGAPRSVMATIRYRM
HCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]