| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is spoT [H]
Identifier: 73542157
GI number: 73542157
Start: 2710640
End: 2713063
Strand: Reverse
Name: spoT [H]
Synonym: Reut_A2471
Alternate gene names: 73542157
Gene position: 2713063-2710640 (Counterclockwise)
Preceding gene: 73542158
Following gene: 73542155
Centisome position: 71.27
GC content: 64.65
Gene sequence:
>2424_bases GTGAACGCGCGCACCGGCGCTCCCAATCTTCCTGACCCGCTCGGCAACGATGTTGTCGGGGAACGTGCCGTCGTGCCGCC GATTGCGCAGGGCAAGGCACGCATGGCCGCATCGGCCATGCACGACGAGCTGACGGCCGTGGAGGAGGCGCCGGCGGCAC TGGCAGCCGATAGCCTGTTTATCGATGCTGTGCTGGCACAGTCATACCGGCATTTCTTCGGGCCGACGTCACAGCCCGCG GTGCCGCCGCGCCAGCAGGTCATCTCCATCACGCGGCTGATGGAGAAACTGGCCTATCTGAAGGCACCCGACCAGGCCCG CGTGCGCGAGGCCTTCCAGTTTTCCGACGAGGCCCACCTGGGCCAGTACCGACAGAGCGGCGAGCCGTACATCACCCATC CGGTGGCGGTGGCCGAGTTGTGCGCGGACTGGCGGCTCGATGTGCAATCCATCATGGCGGCGCTGCTGCATGACGTGATG GAAGACCAGGGCATCACCAAGAGCGAGCTGGCCGAGAAATTCGGTCCCAAGGTTGCTGAACTGGTCGATGGCCTGACCAA GCTGGACAAGCTCGAATTCCAGAGCCGCGAGCAGGCGCAGGCGGAGAGCTTCCGCAAGATGCTGCTCGCGATGGCGCGCG ACGTGCGCGTGATCCTGGTGAAGCTGGCCGACCGTACGCACAACATGCGCACGCTCGACTTCGTGCCGCCGGAAAAACGC CGCCGTATTGCGCTGGAGACCATGGAGATCTATGCGCCGATCGCGCACAGGCTCGGTCTCAATACGATTTACCGCGAGCT GCAGGAACTGTCGTTCAAGGTCGGCTCGCCGTTCCGCTACGCGACGCTCGAGAAGGCCGTGAAGGCCGCGCGTGGCAACC GCCGCGAGGTGGTCAAGCGCATTCTCGAGGCCGCGCAGAAGGCGCTGGCCGATGCGGGCATCGTCGCCGAGCTCTCCGGC CGCGAGAAGACGCTCTACAGCATCTACCGCAAGATGCACGACAAGCAGCTGTCGTTCTCGCAAGTGCTCGACGTGTACGG TTTCCGCGTGGTCGTGGAAACGCAGATGCACTGCTACATGGCGATGGGCGCGCTGCACAGCCTGTACAAGCCGATGCCCG GCAAGTTCAAGGACTATATCGCGATTCCGAAGATCAACGGCTACCAGTCGCTGCATACGACGCTGGTGGGTCCGTTCGGC ACGCCGGTGGAGTTCCAGATCCGCACGCGCGAGATGCACCAGATCGCCGAGGCCGGCGTGGCCGCGCACTGGATGTACAA GACGCAGGCGGACCATGCCAACGATATCCAGCAGCAGGCGCACCAGTGGCTGCAGTCGCTGCTCGATATCCAGAGCCAGA CTGGCGATTCACAGGAATTCCTCGAACACGTCAAGATCGACCTGTTCCCGGACGCGGTCTACGTGTTCACGCCCAAGGGC CATATCCGCGCGCTGCCGCGCGGCGCCACGGCGCTGGATTTTGCCTATGCGGTGCACAGCGACCTGGGCAACCAGTGCGT CGCGGTGAAGATCAACAACGAGCTGCTGCCGCTGCGCACGGAGCTCAAGAGCGGCGACATCGTCGAAGTGGTGACGGCGC CGTACTCGAAGCCGAACCCGTCGTGGCTGTCGTTCGTGCGCACCGGCAAGGCACGCGCGGCGATCCGCCACTACCTGAAG ACCACGAAACTCGACGAAGCGATCCAGCTTGGCGAGCGGCTGCTGGAGCAGTCGGCGCGCCAGCTCGGCATCGAACTGAA GGCCGTGCCGCAGACCGTGTGGGATCGCATGATCCAGTGGACCGGCAACAAGCACCGCGAAGACATCTTCGCCGACCTGG CGCTCGGCCGCCGCGTGCCGGCCGTGGTGGCCAAGCGCATGGAGATCCTGCTGCAGGAATTGTCAGGCGATGTCGACAGC GCGCTTCTGGCCGCCGTGCAGACATTCTCGGGCGAAGAAGCGCCGGCCGTGCCGATCACGGGCGACGAGGGCATGTCGAT CCTGTTCCCGGCATGCTGCCGCCCGATTCCCGGCGATCCGATTGTCGGCTACCTGGGCAAGGGCGAAGGCCTGCAGATCC ACGTGCAGGACTGCAAGGTGGCCAAGCGCCTGCACAGCAAGGATCCGGAGCACTGGATCGACGTCATGTGGGCGAAGAAG ACCGCGCGCGCATTCGACGTGTCGATCAAGGTGATGGTGCGTAATGTCAAGGGCATCGTGGCCCGCGTGGCCGCGGATCT GACCTCGGCGGATGCAAACGTCGCGCACGTGTCGATGGAGCAGCAGGACGCCGGCCATCAGGAGGCGACCTACATGCAGT TCATCATCCAGGTACAGAACCGCCTGCACCTGGCTAACGTGATGCGTGCCCTGCGGCGGAACCCGGACGTAATCCGCATC TTCCGCGACCGCAACGACGGCTGA
Upstream 100 bases:
>100_bases CTCGTCAACCGACTCCCCCGGCGCGCCAGCGCGCGGCGAGACGGGCAGCGATGCCGGAGCGGCGTCCGCGCGTAAGCGCT CTCCTTCCGGCCAGGCATCC
Downstream 100 bases:
>100_bases GCGCCGCCGTTGCGTGGTCAGCCCGCCTTGCGCGGCGGATAGCTGACATCCAGGATATCGATCTGTTCAACGCCGGCCGG GGTGCGTAGCGCCACGGTAT
Product: RelA/SpoT protein
Products: NA
Alternate protein names: Penta-phosphate guanosine-3'-pyrophosphohydrolase; (ppGpp)ase [H]
Number of amino acids: Translated: 807; Mature: 807
Protein sequence:
>807_residues MNARTGAPNLPDPLGNDVVGERAVVPPIAQGKARMAASAMHDELTAVEEAPAALAADSLFIDAVLAQSYRHFFGPTSQPA VPPRQQVISITRLMEKLAYLKAPDQARVREAFQFSDEAHLGQYRQSGEPYITHPVAVAELCADWRLDVQSIMAALLHDVM EDQGITKSELAEKFGPKVAELVDGLTKLDKLEFQSREQAQAESFRKMLLAMARDVRVILVKLADRTHNMRTLDFVPPEKR RRIALETMEIYAPIAHRLGLNTIYRELQELSFKVGSPFRYATLEKAVKAARGNRREVVKRILEAAQKALADAGIVAELSG REKTLYSIYRKMHDKQLSFSQVLDVYGFRVVVETQMHCYMAMGALHSLYKPMPGKFKDYIAIPKINGYQSLHTTLVGPFG TPVEFQIRTREMHQIAEAGVAAHWMYKTQADHANDIQQQAHQWLQSLLDIQSQTGDSQEFLEHVKIDLFPDAVYVFTPKG HIRALPRGATALDFAYAVHSDLGNQCVAVKINNELLPLRTELKSGDIVEVVTAPYSKPNPSWLSFVRTGKARAAIRHYLK TTKLDEAIQLGERLLEQSARQLGIELKAVPQTVWDRMIQWTGNKHREDIFADLALGRRVPAVVAKRMEILLQELSGDVDS ALLAAVQTFSGEEAPAVPITGDEGMSILFPACCRPIPGDPIVGYLGKGEGLQIHVQDCKVAKRLHSKDPEHWIDVMWAKK TARAFDVSIKVMVRNVKGIVARVAADLTSADANVAHVSMEQQDAGHQEATYMQFIIQVQNRLHLANVMRALRRNPDVIRI FRDRNDG
Sequences:
>Translated_807_residues MNARTGAPNLPDPLGNDVVGERAVVPPIAQGKARMAASAMHDELTAVEEAPAALAADSLFIDAVLAQSYRHFFGPTSQPA VPPRQQVISITRLMEKLAYLKAPDQARVREAFQFSDEAHLGQYRQSGEPYITHPVAVAELCADWRLDVQSIMAALLHDVM EDQGITKSELAEKFGPKVAELVDGLTKLDKLEFQSREQAQAESFRKMLLAMARDVRVILVKLADRTHNMRTLDFVPPEKR RRIALETMEIYAPIAHRLGLNTIYRELQELSFKVGSPFRYATLEKAVKAARGNRREVVKRILEAAQKALADAGIVAELSG REKTLYSIYRKMHDKQLSFSQVLDVYGFRVVVETQMHCYMAMGALHSLYKPMPGKFKDYIAIPKINGYQSLHTTLVGPFG TPVEFQIRTREMHQIAEAGVAAHWMYKTQADHANDIQQQAHQWLQSLLDIQSQTGDSQEFLEHVKIDLFPDAVYVFTPKG HIRALPRGATALDFAYAVHSDLGNQCVAVKINNELLPLRTELKSGDIVEVVTAPYSKPNPSWLSFVRTGKARAAIRHYLK TTKLDEAIQLGERLLEQSARQLGIELKAVPQTVWDRMIQWTGNKHREDIFADLALGRRVPAVVAKRMEILLQELSGDVDS ALLAAVQTFSGEEAPAVPITGDEGMSILFPACCRPIPGDPIVGYLGKGEGLQIHVQDCKVAKRLHSKDPEHWIDVMWAKK TARAFDVSIKVMVRNVKGIVARVAADLTSADANVAHVSMEQQDAGHQEATYMQFIIQVQNRLHLANVMRALRRNPDVIRI FRDRNDG >Mature_807_residues MNARTGAPNLPDPLGNDVVGERAVVPPIAQGKARMAASAMHDELTAVEEAPAALAADSLFIDAVLAQSYRHFFGPTSQPA VPPRQQVISITRLMEKLAYLKAPDQARVREAFQFSDEAHLGQYRQSGEPYITHPVAVAELCADWRLDVQSIMAALLHDVM EDQGITKSELAEKFGPKVAELVDGLTKLDKLEFQSREQAQAESFRKMLLAMARDVRVILVKLADRTHNMRTLDFVPPEKR RRIALETMEIYAPIAHRLGLNTIYRELQELSFKVGSPFRYATLEKAVKAARGNRREVVKRILEAAQKALADAGIVAELSG REKTLYSIYRKMHDKQLSFSQVLDVYGFRVVVETQMHCYMAMGALHSLYKPMPGKFKDYIAIPKINGYQSLHTTLVGPFG TPVEFQIRTREMHQIAEAGVAAHWMYKTQADHANDIQQQAHQWLQSLLDIQSQTGDSQEFLEHVKIDLFPDAVYVFTPKG HIRALPRGATALDFAYAVHSDLGNQCVAVKINNELLPLRTELKSGDIVEVVTAPYSKPNPSWLSFVRTGKARAAIRHYLK TTKLDEAIQLGERLLEQSARQLGIELKAVPQTVWDRMIQWTGNKHREDIFADLALGRRVPAVVAKRMEILLQELSGDVDS ALLAAVQTFSGEEAPAVPITGDEGMSILFPACCRPIPGDPIVGYLGKGEGLQIHVQDCKVAKRLHSKDPEHWIDVMWAKK TARAFDVSIKVMVRNVKGIVARVAADLTSADANVAHVSMEQQDAGHQEATYMQFIIQVQNRLHLANVMRALRRNPDVIRI FRDRNDG
Specific function: In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the degradation of ppGpp into G
COG id: COG0317
COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
Organism=Escherichia coli, GI1790082, Length=720, Percent_Identity=47.5, Blast_Score=680, Evalue=0.0, Organism=Escherichia coli, GI1789147, Length=687, Percent_Identity=32.3144104803493, Blast_Score=382, Evalue=1e-107,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR003607 - InterPro: IPR007685 - InterPro: IPR004811 - InterPro: IPR004095 - InterPro: IPR012676 [H]
Pfam domain/function: PF04607 RelA_SpoT; PF02824 TGS [H]
EC number: =3.1.7.2 [H]
Molecular weight: Translated: 90187; Mature: 90187
Theoretical pI: Translated: 8.35; Mature: 8.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNARTGAPNLPDPLGNDVVGERAVVPPIAQGKARMAASAMHDELTAVEEAPAALAADSLF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH IDAVLAQSYRHFFGPTSQPAVPPRQQVISITRLMEKLAYLKAPDQARVREAFQFSDEAHL HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHH GQYRQSGEPYITHPVAVAELCADWRLDVQSIMAALLHDVMEDQGITKSELAEKFGPKVAE HHHHHCCCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHH LVDGLTKLDKLEFQSREQAQAESFRKMLLAMARDVRVILVKLADRTHNMRTLDFVPPEKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH RRIALETMEIYAPIAHRLGLNTIYRELQELSFKVGSPFRYATLEKAVKAARGNRREVVKR HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHH ILEAAQKALADAGIVAELSGREKTLYSIYRKMHDKQLSFSQVLDVYGFRVVVETQMHCYM HHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEEHHHHHHH AMGALHSLYKPMPGKFKDYIAIPKINGYQSLHTTLVGPFGTPVEFQIRTREMHQIAEAGV HHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCH AAHWMYKTQADHANDIQQQAHQWLQSLLDIQSQTGDSQEFLEHVKIDLFPDAVYVFTPKG HHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCEEEEECCCC HIRALPRGATALDFAYAVHSDLGNQCVAVKINNELLPLRTELKSGDIVEVVTAPYSKPNP CEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCEECHHHHCCCCCEEEEEECCCCCCCH SWLSFVRTGKARAAIRHYLKTTKLDEAIQLGERLLEQSARQLGIELKAVPQTVWDRMIQW HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH TGNKHREDIFADLALGRRVPAVVAKRMEILLQELSGDVDSALLAAVQTFSGEEAPAVPIT CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC GDEGMSILFPACCRPIPGDPIVGYLGKGEGLQIHVQDCKVAKRLHSKDPEHWIDVMWAKK CCCCCEEEEHHHCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHH TARAFDVSIKVMVRNVKGIVARVAADLTSADANVAHVSMEQQDAGHQEATYMQFIIQVQN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHH RLHLANVMRALRRNPDVIRIFRDRNDG HHHHHHHHHHHHCCCCEEEEECCCCCC >Mature Secondary Structure MNARTGAPNLPDPLGNDVVGERAVVPPIAQGKARMAASAMHDELTAVEEAPAALAADSLF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH IDAVLAQSYRHFFGPTSQPAVPPRQQVISITRLMEKLAYLKAPDQARVREAFQFSDEAHL HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHH GQYRQSGEPYITHPVAVAELCADWRLDVQSIMAALLHDVMEDQGITKSELAEKFGPKVAE HHHHHCCCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHH LVDGLTKLDKLEFQSREQAQAESFRKMLLAMARDVRVILVKLADRTHNMRTLDFVPPEKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH RRIALETMEIYAPIAHRLGLNTIYRELQELSFKVGSPFRYATLEKAVKAARGNRREVVKR HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHH ILEAAQKALADAGIVAELSGREKTLYSIYRKMHDKQLSFSQVLDVYGFRVVVETQMHCYM HHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEEHHHHHHH AMGALHSLYKPMPGKFKDYIAIPKINGYQSLHTTLVGPFGTPVEFQIRTREMHQIAEAGV HHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCH AAHWMYKTQADHANDIQQQAHQWLQSLLDIQSQTGDSQEFLEHVKIDLFPDAVYVFTPKG HHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCEEEEECCCC HIRALPRGATALDFAYAVHSDLGNQCVAVKINNELLPLRTELKSGDIVEVVTAPYSKPNP CEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCEECHHHHCCCCCEEEEEECCCCCCCH SWLSFVRTGKARAAIRHYLKTTKLDEAIQLGERLLEQSARQLGIELKAVPQTVWDRMIQW HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH TGNKHREDIFADLALGRRVPAVVAKRMEILLQELSGDVDSALLAAVQTFSGEEAPAVPIT CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC GDEGMSILFPACCRPIPGDPIVGYLGKGEGLQIHVQDCKVAKRLHSKDPEHWIDVMWAKK CCCCCEEEEHHHCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHH TARAFDVSIKVMVRNVKGIVARVAADLTSADANVAHVSMEQQDAGHQEATYMQFIIQVQN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHH RLHLANVMRALRRNPDVIRIFRDRNDG HHHHHHHHHHHHCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]