Click here to switch to the map view.

The map label for this gene is exbD1 [H]

Identifier: 73541924

GI number: 73541924

Start: 2470163

End: 2470576

Strand: Direct

Name: exbD1 [H]

Synonym: Reut_A2237

Alternate gene names: 73541924

Gene position: 2470163-2470576 (Clockwise)

Preceding gene: 73541923

Following gene: 73541925

Centisome position: 64.89

GC content: 60.63

Gene sequence:

>414_bases
ATGGCATTTGGCACGCTCGACGGGGACGATGACGAGGTGATGAGCGAAATCAACATGACGCCGCTGGTCGACGTCATGCT
GGTGCTGCTGATCATCTTCATCATCACGATCCCGGTCATCAACCACGCGGTGAAGATCGACCTGCCGCGCGCAAGCAGTA
CCCCGAACGAATCCAAGCCGCAGAACATCAACGTCTCGATCGACGCCCAGGGAAAGGTCTACTGGAACCAGACCGAGGTG
GACGATACTACGCTGGCCAACAACATCGCGCTGGCCGCGAAGCAGGAGCCGCAACCTGAACTTCACCTGCGCGCGGACCG
CGACGTGCGCTACGAGCGCGTGGCCGAGGTCATGGCCGCCGCGCAGCATGGCGGGCTAGGAAAGATTGGTTTCATCACCG
AGCCGAAGCAGTAA

Upstream 100 bases:

>100_bases
GACCGGCGCACGCGTTCGGCCGGCCAGCACCCGCGGCGACGACAACGCCGTACGCCTCGCCTCTGCACGGCAGTAACACT
ACCGCATCAAGGAAGTCATC

Downstream 100 bases:

>100_bases
ATTCTGATCGTCCGGCCACACCGGTCGACAGCTTCAGGAAAGGGCATCCCTACGGATGCCCTTTGTGCTTTTGGTGTGTC
AACTCGACGAGAGATGTAAC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MAFGTLDGDDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRASSTPNESKPQNINVSIDAQGKVYWNQTEV
DDTTLANNIALAAKQEPQPELHLRADRDVRYERVAEVMAAAQHGGLGKIGFITEPKQ

Sequences:

>Translated_137_residues
MAFGTLDGDDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRASSTPNESKPQNINVSIDAQGKVYWNQTEV
DDTTLANNIALAAKQEPQPELHLRADRDVRYERVAEVMAAAQHGGLGKIGFITEPKQ
>Mature_136_residues
AFGTLDGDDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRASSTPNESKPQNINVSIDAQGKVYWNQTEVD
DTTLANNIALAAKQEPQPELHLRADRDVRYERVAEVMAAAQHGGLGKIGFITEPKQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=126, Percent_Identity=34.1269841269841, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15077; Mature: 14946

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGTLDGDDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRASSTPNESKP
CCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
QNINVSIDAQGKVYWNQTEVDDTTLANNIALAAKQEPQPELHLRADRDVRYERVAEVMAA
CEEEEEEECCCEEEECCCCCCCHHHHCCEEEEECCCCCCCEEEECCCCCCHHHHHHHHHH
AQHGGLGKIGFITEPKQ
HHCCCCCCCCCEECCCC
>Mature Secondary Structure 
AFGTLDGDDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRASSTPNESKP
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
QNINVSIDAQGKVYWNQTEVDDTTLANNIALAAKQEPQPELHLRADRDVRYERVAEVMAA
CEEEEEEECCCEEEECCCCCCCHHHHCCEEEEECCCCCCCEEEECCCCCCHHHHHHHHHH
AQHGGLGKIGFITEPKQ
HHCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]