| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is ugpC [H]
Identifier: 73541896
GI number: 73541896
Start: 2442095
End: 2443216
Strand: Reverse
Name: ugpC [H]
Synonym: Reut_A2209
Alternate gene names: 73541896
Gene position: 2443216-2442095 (Counterclockwise)
Preceding gene: 73541898
Following gene: 73541895
Centisome position: 64.18
GC content: 68.54
Gene sequence:
>1122_bases ATGCAGCTGAGTCTTGAGGGCATTGCGCAGCAAGCGGGCTCGCAAGCCTGCCTTTATCCAATGTCGCTGGCGCCCATGGC GGGTGCGGTGACAGTGCTGCTTGGCGCCACGCAAGCCGGCAAGACTTCCCTCATGCGCGTGATGGCCGGACTGGACCGCC CCAGCGCCGGCCGCGTTCTGGTAGACGGCGCCGACGTGACTGGTGTGCCGGTGCGCGAGCGCAATGTCTCGATGGTGTAC CAGCAGTTCATCAACTATCCGTCGATGCGCGTATTCGACAACATCGCTTCTCCGATGCGGCTGCAGCGGCAGGCCAGTCG CGATGACATCGCGGCACGCGTGCGGTCGCTGGCGGCGAGGCTGCATATCGACCACTTGCTGGACCGCTACCCGGCAGAAC TCTCGGGCGGCCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGCTAGCCAAGGGCGCGCCGCTGATGTTGCTGGACGAGCCG CTGGTCAACCTCGATTACAAGCTGCGCGAAGAGTTGCGCGAAGAACTGACCCACCTGTTCGCGCAAGGCGATGCCACTGT GGTCTACGCCACCACCGAGCCGGCCGAGGCGCTGCTGCTCGGCGGCTACACCGCCGTGCTCGATGCCGGCGAATTGCTGC AATACGGCCCGACGCCCGAGGTCTTCCACTATCCCGATTCGCTGCGCGTCGCGCGCGCGTTCAGCGATCCGCCCATGAAT CTCATGGAAGGCTCGCTGCGAGGCGGCTGGGTCACATTGTCGGACGACATCGCGGTGCCCGTGCCCGGAGCGGGCAGCCG CGCCGGCCCCGTTACTGTGGGGGTGCGCGCGGCCGCACTGCGACTCGATGGCGTGCCGGGATCGGTCCCCGTGCCTGGCC GCGTGGCACTGGCGGAACTGTCCGGTTCCGATACCTTCGTGCATGCCGATACACCGGTCGGCAACCTGGTGTCGCAGTTC GCGGGCGTGTTCGATCTCCGGCTCGGTGCGCCACTGACGCTGCATCTCGACCCGGCGCAGCTCTACGTGTTCGATGACAG CGGCCGGCGCCTGAGCGCGCCGCGCCGGCCCGGCGGCCTGGCGGCCACTGTTCCGCCTGCCGGCGCAGCGACGGGGGGCT GA
Upstream 100 bases:
>100_bases TTATGTTCGTTCATTTACTAAAACGAGCATAAGCCACACATTGGGCGCCCGCAGCGCGCTGGCTTCCTGGTGGAAGGGGA AGTTCGAACATGGAGATCGG
Downstream 100 bases:
>100_bases GATGGCGCGCGTCGACCTTGATCTCGCCCATTCCTACGTGGCCGATCCGCGCTCCGATGACGACTACGCGCTGCTGCCGC TCAGGTTCAGCTTCGAGGAC
Product: ABC transporter related
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 373; Mature: 373
Protein sequence:
>373_residues MQLSLEGIAQQAGSQACLYPMSLAPMAGAVTVLLGATQAGKTSLMRVMAGLDRPSAGRVLVDGADVTGVPVRERNVSMVY QQFINYPSMRVFDNIASPMRLQRQASRDDIAARVRSLAARLHIDHLLDRYPAELSGGQQQRVALARALAKGAPLMLLDEP LVNLDYKLREELREELTHLFAQGDATVVYATTEPAEALLLGGYTAVLDAGELLQYGPTPEVFHYPDSLRVARAFSDPPMN LMEGSLRGGWVTLSDDIAVPVPGAGSRAGPVTVGVRAAALRLDGVPGSVPVPGRVALAELSGSDTFVHADTPVGNLVSQF AGVFDLRLGAPLTLHLDPAQLYVFDDSGRRLSAPRRPGGLAATVPPAGAATGG
Sequences:
>Translated_373_residues MQLSLEGIAQQAGSQACLYPMSLAPMAGAVTVLLGATQAGKTSLMRVMAGLDRPSAGRVLVDGADVTGVPVRERNVSMVY QQFINYPSMRVFDNIASPMRLQRQASRDDIAARVRSLAARLHIDHLLDRYPAELSGGQQQRVALARALAKGAPLMLLDEP LVNLDYKLREELREELTHLFAQGDATVVYATTEPAEALLLGGYTAVLDAGELLQYGPTPEVFHYPDSLRVARAFSDPPMN LMEGSLRGGWVTLSDDIAVPVPGAGSRAGPVTVGVRAAALRLDGVPGSVPVPGRVALAELSGSDTFVHADTPVGNLVSQF AGVFDLRLGAPLTLHLDPAQLYVFDDSGRRLSAPRRPGGLAATVPPAGAATGG >Mature_373_residues MQLSLEGIAQQAGSQACLYPMSLAPMAGAVTVLLGATQAGKTSLMRVMAGLDRPSAGRVLVDGADVTGVPVRERNVSMVY QQFINYPSMRVFDNIASPMRLQRQASRDDIAARVRSLAARLHIDHLLDRYPAELSGGQQQRVALARALAKGAPLMLLDEP LVNLDYKLREELREELTHLFAQGDATVVYATTEPAEALLLGGYTAVLDAGELLQYGPTPEVFHYPDSLRVARAFSDPPMN LMEGSLRGGWVTLSDDIAVPVPGAGSRAGPVTVGVRAAALRLDGVPGSVPVPGRVALAELSGSDTFVHADTPVGNLVSQF AGVFDLRLGAPLTLHLDPAQLYVFDDSGRRLSAPRRPGGLAATVPPAGAATGG
Specific function: Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system [H]
COG id: COG3839
COG function: function code G; ABC-type sugar transport systems, ATPase components
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI171184400, Length=219, Percent_Identity=28.7671232876712, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI116734710, Length=203, Percent_Identity=29.064039408867, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI21536376, Length=208, Percent_Identity=26.4423076923077, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI105990541, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI42741659, Length=155, Percent_Identity=31.6129032258064, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI9955966, Length=219, Percent_Identity=29.6803652968037, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI45243524, Length=219, Percent_Identity=29.6803652968037, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI9955968, Length=219, Percent_Identity=29.6803652968037, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI87082267, Length=356, Percent_Identity=34.2696629213483, Blast_Score=179, Evalue=2e-46, Organism=Escherichia coli, GI1790467, Length=374, Percent_Identity=31.8181818181818, Blast_Score=163, Evalue=2e-41, Organism=Escherichia coli, GI87081791, Length=298, Percent_Identity=32.8859060402685, Blast_Score=160, Evalue=9e-41, Organism=Escherichia coli, GI87081709, Length=280, Percent_Identity=32.5, Blast_Score=159, Evalue=3e-40, Organism=Escherichia coli, GI1788761, Length=252, Percent_Identity=35.7142857142857, Blast_Score=150, Evalue=9e-38, Organism=Escherichia coli, GI1787370, Length=234, Percent_Identity=36.3247863247863, Blast_Score=147, Evalue=2e-36, Organism=Escherichia coli, GI1789032, Length=231, Percent_Identity=34.1991341991342, Blast_Score=128, Evalue=6e-31, Organism=Escherichia coli, GI1787712, Length=211, Percent_Identity=32.2274881516588, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=32.1888412017167, Blast_Score=115, Evalue=5e-27, Organism=Escherichia coli, GI1786398, Length=229, Percent_Identity=33.6244541484716, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=35.5555555555556, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1788450, Length=248, Percent_Identity=31.4516129032258, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1789672, Length=237, Percent_Identity=29.957805907173, Blast_Score=106, Evalue=3e-24, Organism=Escherichia coli, GI1786253, Length=203, Percent_Identity=33.0049261083744, Blast_Score=105, Evalue=6e-24, Organism=Escherichia coli, GI1789873, Length=192, Percent_Identity=35.9375, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1788225, Length=244, Percent_Identity=29.9180327868852, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1786872, Length=239, Percent_Identity=30.1255230125523, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1788644, Length=266, Percent_Identity=29.3233082706767, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1790162, Length=226, Percent_Identity=30.0884955752212, Blast_Score=88, Evalue=9e-19, Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=30.4761904761905, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787105, Length=187, Percent_Identity=32.0855614973262, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI87081834, Length=156, Percent_Identity=30.1282051282051, Blast_Score=85, Evalue=8e-18, Organism=Escherichia coli, GI1786703, Length=190, Percent_Identity=29.4736842105263, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786981, Length=222, Percent_Identity=32.8828828828829, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=29.3577981651376, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786563, Length=200, Percent_Identity=31.5, Blast_Score=82, Evalue=7e-17, Organism=Escherichia coli, GI1787500, Length=202, Percent_Identity=26.7326732673267, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1790739, Length=237, Percent_Identity=29.957805907173, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI87082268, Length=217, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1789593, Length=231, Percent_Identity=25.974025974026, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786698, Length=202, Percent_Identity=26.2376237623762, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787547, Length=215, Percent_Identity=26.5116279069767, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1787758, Length=196, Percent_Identity=27.0408163265306, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1789586, Length=240, Percent_Identity=27.0833333333333, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1788210, Length=213, Percent_Identity=28.6384976525822, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788506, Length=233, Percent_Identity=28.755364806867, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI145693107, Length=208, Percent_Identity=26.4423076923077, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1788165, Length=224, Percent_Identity=29.4642857142857, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1789962, Length=208, Percent_Identity=23.5576923076923, Blast_Score=69, Evalue=7e-13, Organism=Escherichia coli, GI87081782, Length=204, Percent_Identity=29.9019607843137, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790534, Length=172, Percent_Identity=31.3953488372093, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786803, Length=200, Percent_Identity=27.5, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790525, Length=230, Percent_Identity=24.7826086956522, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787759, Length=226, Percent_Identity=26.5486725663717, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1789963, Length=222, Percent_Identity=26.5765765765766, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI48994943, Length=241, Percent_Identity=26.5560165975104, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI48994883, Length=214, Percent_Identity=26.1682242990654, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1789991, Length=169, Percent_Identity=25.4437869822485, Blast_Score=62, Evalue=7e-11, Organism=Escherichia coli, GI1786319, Length=203, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=7e-11, Organism=Escherichia coli, GI1788053, Length=154, Percent_Identity=30.5194805194805, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17565586, Length=206, Percent_Identity=29.6116504854369, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI115533592, Length=173, Percent_Identity=31.2138728323699, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193202349, Length=179, Percent_Identity=30.1675977653631, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71983523, Length=197, Percent_Identity=25.8883248730964, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71983516, Length=197, Percent_Identity=25.8883248730964, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71983510, Length=197, Percent_Identity=25.8883248730964, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193208177, Length=229, Percent_Identity=26.6375545851528, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17510237, Length=217, Percent_Identity=23.5023041474654, Blast_Score=68, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6323959, Length=219, Percent_Identity=26.027397260274, Blast_Score=63, Evalue=1e-10, Organism=Drosophila melanogaster, GI24666092, Length=218, Percent_Identity=25.6880733944954, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI221500365, Length=219, Percent_Identity=26.4840182648402, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI116007184, Length=219, Percent_Identity=26.4840182648402, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI24648314, Length=193, Percent_Identity=27.4611398963731, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574150, Length=199, Percent_Identity=29.1457286432161, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007328, Length=199, Percent_Identity=29.1457286432161, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI85725262, Length=186, Percent_Identity=30.6451612903226, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI221512771, Length=212, Percent_Identity=26.4150943396226, Blast_Score=65, Evalue=9e-11, Organism=Drosophila melanogaster, GI23397593, Length=221, Percent_Identity=30.316742081448, Blast_Score=65, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR017922 - InterPro: IPR008995 - InterPro: IPR013611 [H]
Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]
EC number: =3.6.3.20 [H]
Molecular weight: Translated: 39346; Mature: 39346
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLSLEGIAQQAGSQACLYPMSLAPMAGAVTVLLGATQAGKTSLMRVMAGLDRPSAGRVL CCCCHHHHHHHCCCCEEEECCHHCCHHHHEEHEEECCCCCHHHHHHHHHCCCCCCCCEEE VDGADVTGVPVRERNVSMVYQQFINYPSMRVFDNIASPMRLQRQASRDDIAARVRSLAAR EECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH LHIDHLLDRYPAELSGGQQQRVALARALAKGAPLMLLDEPLVNLDYKLREELREELTHLF HHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH AQGDATVVYATTEPAEALLLGGYTAVLDAGELLQYGPTPEVFHYPDSLRVARAFSDPPMN HCCCCEEEEEECCCCCEEEECCHHHHHCHHHHHHCCCCCCEEECCCHHHHHHHCCCCCHH LMEGSLRGGWVTLSDDIAVPVPGAGSRAGPVTVGVRAAALRLDGVPGSVPVPGRVALAEL HHCCCCCCCEEEECCCEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEE SGSDTFVHADTPVGNLVSQFAGVFDLRLGAPLTLHLDPAQLYVFDDSGRRLSAPRRPGGL CCCCEEEECCCCHHHHHHHHHHHEEEECCCEEEEEECCEEEEEECCCCCEECCCCCCCCE AATVPPAGAATGG EEECCCCCCCCCC >Mature Secondary Structure MQLSLEGIAQQAGSQACLYPMSLAPMAGAVTVLLGATQAGKTSLMRVMAGLDRPSAGRVL CCCCHHHHHHHCCCCEEEECCHHCCHHHHEEHEEECCCCCHHHHHHHHHCCCCCCCCEEE VDGADVTGVPVRERNVSMVYQQFINYPSMRVFDNIASPMRLQRQASRDDIAARVRSLAAR EECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH LHIDHLLDRYPAELSGGQQQRVALARALAKGAPLMLLDEPLVNLDYKLREELREELTHLF HHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH AQGDATVVYATTEPAEALLLGGYTAVLDAGELLQYGPTPEVFHYPDSLRVARAFSDPPMN HCCCCEEEEEECCCCCEEEECCHHHHHCHHHHHHCCCCCCEEECCCHHHHHHHCCCCCHH LMEGSLRGGWVTLSDDIAVPVPGAGSRAGPVTVGVRAAALRLDGVPGSVPVPGRVALAEL HHCCCCCCCEEEECCCEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEE SGSDTFVHADTPVGNLVSQFAGVFDLRLGAPLTLHLDPAQLYVFDDSGRRLSAPRRPGGL CCCCEEEECCCCHHHHHHHHHHHEEEECCCEEEEEECCEEEEEECCCCCEECCCCCCCCE AATVPPAGAATGG EEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA