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The map label for this gene is ydaM [H]

Identifier: 73541842

GI number: 73541842

Start: 2374510

End: 2375745

Strand: Reverse

Name: ydaM [H]

Synonym: Reut_A2154

Alternate gene names: 73541842

Gene position: 2375745-2374510 (Counterclockwise)

Preceding gene: 73541843

Following gene: 73541840

Centisome position: 62.41

GC content: 66.02

Gene sequence:

>1236_bases
ATGTTTCAGTCGCACATGATTGTGCTCATTGCAGGCGTGTTTGCCCTGCAGATGGCGGTGGTTTGCGCCGTGCTGCGCCG
CACGCCGGGAATGGCGATGAGCGGCCTGACTTCCTGGGCGCTCGGCGATCTGATGGCCGCCTTGGCGGCAGTGATGCCGG
TCGCGGCGGGGTTCGCTGGCTACTGGCTGGCGGCAGATGCCGTCGATATGGGCCTGTTCTCGGCTGTTTCCCTCATGGTG
GTGGGCACGCGGCATTTCGCGGGAAAGCCGGGGCGCGCCTCCGTGCTCATCGCCGCAAACGTGCTGCTGGTTGCGGCCAT
CGCCGGCGGCACATGGTTGACGCATGCGGACTGGCTGGAGCCGTTGCGTCCATGGATGCCGGCAGTGCTCAGGCTCGGGC
ATGTCCTGCTGCTGCTCGATCTCGCGCGCAGCGTTGCGCCGTTGCTTGCCCAAAAGCGCGGAACGGGCAGGTTGGCTGCG
CTGTCGCTGGTAGTGATCGCCGCAGCTTGCGCCGGGTTGAACGCCTGGAAGCTCGCCGGTTCGATCGGCCAGCCCGCCGT
TGCCGGCCCGTTGCTGCGGGACGGATCGCTCGTCGTACTGAATGTGTTTGCCGTGGTGGGGTTGTCCGTGAGCTTTGCAT
TGATGGCTCATGACCGTCTGCGCCGGATGCTGGAGCACAAGGCCAGCCACGATGATCTCACCGGCCTGCTGGCACGCACC
GCATTCTGGCAGGCGCTCGAGGCAGCCAGCACGCATGTGGACCGGCACGGCAAGCCGTTGACGGTCGCCTTCATCGACCT
GGACCACTTCAAGGCCATCAACGATGTGTACGGACATCTGGCGGGCGATAGTGTCCTGAGGCATTTCGCCGGCTTGCTAC
GAAAGACGGCGGGGCCAGAGGACATCATCGGCCGGCTCGGCGGCGAGGAGTTCGCCGTGGTCATGCCGGACACCACAATC
GAGCGCGGCCGCGCGGTCAGCATGCATCTCAGCACGACCGTGAGAAACACCCCGTGCCCGTCCGAGCCCGATGCCATTGC
CTATACCGCCAGCATCGGCATGGCACAGCGAGAGCCAGGGGAGAGTGTGGACAGTCTGATGCGCCGCGCCGACCAGGCGC
TCTACGATGCCAAGCAGCGGGGTCGCAACTGCGTTTCGCTGCATCGCGCGACCAAGCCGTCGCATGGCGTAACCCTTGGC
GGCTCCGCGCAGTGGCAACGGCGGGCGGCATCCTGA

Upstream 100 bases:

>100_bases
GGTGTGGCGGCAAATTGAAAACAACGGTCCCAAAGCAGGACCGACAAAAAGGGACGGTGGCGTTGTGCGGGGCGCTGCCT
GTTGCTGGACGGGAATGAAG

Downstream 100 bases:

>100_bases
TCCGCCGTGCGGCATCGCACTGCGGTAGAATGCTGCCCTTCGCGTCCTTAGCTCAGTTGGATAGAGCACTCGCCTTCTAA
GCGAGCGGTCAGAGGTTCGA

Product: GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MFQSHMIVLIAGVFALQMAVVCAVLRRTPGMAMSGLTSWALGDLMAALAAVMPVAAGFAGYWLAADAVDMGLFSAVSLMV
VGTRHFAGKPGRASVLIAANVLLVAAIAGGTWLTHADWLEPLRPWMPAVLRLGHVLLLLDLARSVAPLLAQKRGTGRLAA
LSLVVIAAACAGLNAWKLAGSIGQPAVAGPLLRDGSLVVLNVFAVVGLSVSFALMAHDRLRRMLEHKASHDDLTGLLART
AFWQALEAASTHVDRHGKPLTVAFIDLDHFKAINDVYGHLAGDSVLRHFAGLLRKTAGPEDIIGRLGGEEFAVVMPDTTI
ERGRAVSMHLSTTVRNTPCPSEPDAIAYTASIGMAQREPGESVDSLMRRADQALYDAKQRGRNCVSLHRATKPSHGVTLG
GSAQWQRRAAS

Sequences:

>Translated_411_residues
MFQSHMIVLIAGVFALQMAVVCAVLRRTPGMAMSGLTSWALGDLMAALAAVMPVAAGFAGYWLAADAVDMGLFSAVSLMV
VGTRHFAGKPGRASVLIAANVLLVAAIAGGTWLTHADWLEPLRPWMPAVLRLGHVLLLLDLARSVAPLLAQKRGTGRLAA
LSLVVIAAACAGLNAWKLAGSIGQPAVAGPLLRDGSLVVLNVFAVVGLSVSFALMAHDRLRRMLEHKASHDDLTGLLART
AFWQALEAASTHVDRHGKPLTVAFIDLDHFKAINDVYGHLAGDSVLRHFAGLLRKTAGPEDIIGRLGGEEFAVVMPDTTI
ERGRAVSMHLSTTVRNTPCPSEPDAIAYTASIGMAQREPGESVDSLMRRADQALYDAKQRGRNCVSLHRATKPSHGVTLG
GSAQWQRRAAS
>Mature_411_residues
MFQSHMIVLIAGVFALQMAVVCAVLRRTPGMAMSGLTSWALGDLMAALAAVMPVAAGFAGYWLAADAVDMGLFSAVSLMV
VGTRHFAGKPGRASVLIAANVLLVAAIAGGTWLTHADWLEPLRPWMPAVLRLGHVLLLLDLARSVAPLLAQKRGTGRLAA
LSLVVIAAACAGLNAWKLAGSIGQPAVAGPLLRDGSLVVLNVFAVVGLSVSFALMAHDRLRRMLEHKASHDDLTGLLART
AFWQALEAASTHVDRHGKPLTVAFIDLDHFKAINDVYGHLAGDSVLRHFAGLLRKTAGPEDIIGRLGGEEFAVVMPDTTI
ERGRAVSMHLSTTVRNTPCPSEPDAIAYTASIGMAQREPGESVDSLMRRADQALYDAKQRGRNCVSLHRATKPSHGVTLG
GSAQWQRRAAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=37.0786516853933, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787802, Length=191, Percent_Identity=33.5078534031414, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=33.7278106508876, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=37.2781065088757, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1786584, Length=237, Percent_Identity=29.957805907173, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693134, Length=177, Percent_Identity=33.8983050847458, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788381, Length=192, Percent_Identity=31.7708333333333, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=32.3863636363636, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=31.8681318681319, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=35.625, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=31.3725490196078, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787056, Length=158, Percent_Identity=33.5443037974684, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=28.3132530120482, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 43538; Mature: 43538

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEECCCCHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEECCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]