| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is 73541803
Identifier: 73541803
GI number: 73541803
Start: 2328972
End: 2331845
Strand: Reverse
Name: 73541803
Synonym: Reut_A2115
Alternate gene names: NA
Gene position: 2331845-2328972 (Counterclockwise)
Preceding gene: 73541804
Following gene: 73541802
Centisome position: 61.26
GC content: 69.17
Gene sequence:
>2874_bases ATGACGCCGCTGCGCTTTCGTCCCGGCCCGGATTTCCTCGACCAGGCAGCTGCGGCTGCCTGGTTTTTCCTTGACCGCTG CGGTGTGTCCGAAGCGGGCGCGCACGTGATCGTTCCCACGGCGGCGCAGATCCCCGGCGTACGCATGGCGCTCGATGCTG CAGCGCGCGCCGCCGGCCAGCCGCGGCTGCTGCCGCGCGTGCTCACGCTCGGCCACTGGCTGCTCGACCTGCCGCCTGAA GGCGCGCCGGTGCGCAGCCATGCCGCGAGGCTGCTGGCCGTGCAGCAGGCCGTGCGCGCGCAGGACTGGCTCAGGCGATC GTTTGGCGCCCAGACGGAATCTGCCGCGTGGGGCCTCGCGCAGACGCTGCTGTCGATCTGCGACGAACTCAATACGCGCT GGCTCGAAGACGTCGCCGTGAGCGACGGCGAAGCCATGGATGGCACTGACCGCGCGGCGCTGCTGCAGGGGGCGCTCGAA CGTACCTATGCGCACCTGTCCGAGCGGATGCTGGGCGAGGAGTCGCGCATCGTGCTCGCGTTCTGGCAGGCGCTGTCGGG ACCCGACGATCCGCTGCCATCGCGCCGGCGTGCGCTGCGCCGGCTCGCGCAGCAACTGTCCGGGCCGGTCGTATGGATCG CCCCGACGCCGCCGACGCCTATCGAAGGCGCCTTCCTGCGTGATGCCGACGAGCTCGTGCCAGTGCTGGAGATCGGCTAC GACTGGTCTGGCGCCGCCGAAGCCCAAGAGCCGGGCTGGTATGACACTCTGATCTCGCTGTGGCCCGAGGCACGGATCTC CGATGCCGCCGACGCCCCGGCATTCACGCCAGCGTTGCCCACATTGCCCGAAGGGCGCCCGGCTATCCGCGTCATCGGTA CCGCCCGTTTCGAGGATGAAGCGGCCGCTGCGGCGGACCAGCTCGTGCAATGGCTCAACGCCGGGCGCCGCAATATCGCG CTGGTCGCACACGACCGCGTCGTGGCCAGGCGCGTGCGTGCTTTGCTGGCGCGCGCCGGTGCACCGGTGCGGGACGAGAC CGGCTGGAAGCTGTCGACCACGCGTGCGGCCGCGGCACTGATGCGCTGGTTCGACCTGCTCGTGCGCGATGGCGACACCG CCGCGCTGCTCGACTTGCTGAAAAGTCCGTTCTGCCTGCCCGATTTCCCGGACCGCGGTGCCGCCATCGCGCTGATCGAG CGCCAGGTCCGCCGCGACAATGTCAGTGGCGGTTGGGACCGGCTGCGCCATCTGCCGCGCGCATTGCCCGCTGCGTTGGC CGACGCCGATGCTGACGACACCGAAATCAAGCGCGCCGAGGCAGTGCGCCGCAGTGCGGGCGAGCTGCTCACCATCCTTG CTGACGAGGCGGCACGCTGGCCGCGTGGCCTCGCGCAGCATCCGTTGTCGATGTGGCTCGGTTGCCTGGACGGCACGCTT GACGCGCTCGGCATGCGCGCCGCGCTCGCTGCCGATGAAGCCGGTCGGCAATTGCTCGATGCACTCGCGCGCTTGCAGGA CTTGCCTTCGGATGAAACCAGTTCGCACGCCACGCTGAGCCAGGCCGAGTTCCGCGCGATGCTGTCGGCCTTGCTGGAGT CCGTGGCGTACAAGGAGCCATCGGCGGCAAGCGCGGCGCGCATCACCATCTTGCCGCTGAACGGCGCACGCATGCGCCGT TTCGACGGCGTGGTGGTGGTGGGCTGCGATGACGCGCAACTGCCGTCGAGTGCTGCGGAACTGATGTTCTTTTCCAACCA GATGCGCCGCGAACTGCAGCTCGAGGACCGCGAGTCACGCTTTGCGCAGCAGGCGCGCGACCTAGCCGAAGTCCTGCTTA ACAACGACGACGTGGTGCTGACCTGGCAGCGCCTGGGCGGCCGCGGCGAGCCCAAGCACGTATCCGGCTGGATCGAGCGC CTTTCCGCATGCTGCGCGCGCGCTGGTGTCGCCATTGAAGCCAGCATGGCACCGCTGGTTCATCAGACCTTCGCCGAAAC GCAGGGCATGCCCGCACCGGCAGCACCCCAGCTGGTGCCGGCACGCTGGAGCGCGCAGGCCTACAACATGCTGCGGCGCT GCCCGTATCAATTCTTCGCCGGCCGCATGCTGGGCCTGGCCGGGCTTGACGCTGTCAGCGATGATCTCGAGAAACGCGAT ATCGGCGAGCTGCTGCACCGCGTGCTGCTGCGCTACCATCGCGAACTGCTGGCGCGCCGTGAGCGCGGCGAGACGGTGCC GGAGGCGGAGCGCCTTGACCGGCTGCGCGAAATCTCGGACGACGTCTTTGGCGCACTGATGGCCGAGGACGGCAATGCCA TCGGTTACTACCGGCGTTGGTGTGAAGTCCTGCCGTCCTACGTGACCTGGCAGACCGAGCGCGAAGCGCAAGGATGGTTC TGGCGGGGCGGCGAAATCGACGCCGGCGTGGACCTGCCCATGCCGGACGGCAAGCCGATCCGTTTGAACGGGCGCATCGA CCGGCTCGACCAGGGGCCGGGCGGCGCGCATGCCGTGCTCGACTACAAGACGCAGAGCGCCGCGCGCCTCAAGCGCAAGA CCAGCGAGGTCGAGGAGGACTGCCAGCTGCCGTTCTATGGCCTGTTGCGCGCGGATGCGGTCGGCGGAAGCTGGGTGGCG CTGGAGGGCGTGCGCGACGGCGCCGCCAGCCTGCAGCGCGAAGTCGACCTGCCTGATTTCGACGCCGCCGTTGCGTGGCT CGAGCGGCAGTTGCGCGACGACGTCATGCGCCTGCGCGAAGGCGCGCGGCTGCCGGCGTTCGGCGACGCATCCGCCTGTA TGTATTGCAGTGCCCGCGGCCTGTGTCGCAAGGGCTTTTGGGAATCCACCGCCGTGCCAGCGCTGACAACATGA
Upstream 100 bases:
>100_bases CCATGGGGATTTTGTTGTTTTTGCCATTGCCGTTGTTTTTTCCTTCGTTGTCGTATCCCTTTTCTCCACGCAGGCCGCGT AGCACGCGGCAGGTGCGCCC
Downstream 100 bases:
>100_bases CAGTTCACGCCTACCTGCGCGACGGCCAGCCGGTGGCCGAGGCCGATTTTACCCGCGCCGCTTGCGATCCCGCCAGTTCC GTCGTGGTTGAGGCCTGCGC
Product: DNA helicase/exodeoxyribonuclease V, subunit B
Products: NA
Alternate protein names: DNA Helicase/Exodeoxyribonuclease V Subunit B; Exonuclease-Like Protein; Homologous Recombinational Repair Protein; Exonuclease-Like; Helicase C_term Recb Family Exonuclease; Inactivated Superfamily I Helicase-Like Protein; ATP-Dependent Nuclease Subunit B-Like Protein; Helicase C_term RecB Family Exonuclease; Inactivated Superfamily I Helicase
Number of amino acids: Translated: 957; Mature: 956
Protein sequence:
>957_residues MTPLRFRPGPDFLDQAAAAAWFFLDRCGVSEAGAHVIVPTAAQIPGVRMALDAAARAAGQPRLLPRVLTLGHWLLDLPPE GAPVRSHAARLLAVQQAVRAQDWLRRSFGAQTESAAWGLAQTLLSICDELNTRWLEDVAVSDGEAMDGTDRAALLQGALE RTYAHLSERMLGEESRIVLAFWQALSGPDDPLPSRRRALRRLAQQLSGPVVWIAPTPPTPIEGAFLRDADELVPVLEIGY DWSGAAEAQEPGWYDTLISLWPEARISDAADAPAFTPALPTLPEGRPAIRVIGTARFEDEAAAAADQLVQWLNAGRRNIA LVAHDRVVARRVRALLARAGAPVRDETGWKLSTTRAAAALMRWFDLLVRDGDTAALLDLLKSPFCLPDFPDRGAAIALIE RQVRRDNVSGGWDRLRHLPRALPAALADADADDTEIKRAEAVRRSAGELLTILADEAARWPRGLAQHPLSMWLGCLDGTL DALGMRAALAADEAGRQLLDALARLQDLPSDETSSHATLSQAEFRAMLSALLESVAYKEPSAASAARITILPLNGARMRR FDGVVVVGCDDAQLPSSAAELMFFSNQMRRELQLEDRESRFAQQARDLAEVLLNNDDVVLTWQRLGGRGEPKHVSGWIER LSACCARAGVAIEASMAPLVHQTFAETQGMPAPAAPQLVPARWSAQAYNMLRRCPYQFFAGRMLGLAGLDAVSDDLEKRD IGELLHRVLLRYHRELLARRERGETVPEAERLDRLREISDDVFGALMAEDGNAIGYYRRWCEVLPSYVTWQTEREAQGWF WRGGEIDAGVDLPMPDGKPIRLNGRIDRLDQGPGGAHAVLDYKTQSAARLKRKTSEVEEDCQLPFYGLLRADAVGGSWVA LEGVRDGAASLQREVDLPDFDAAVAWLERQLRDDVMRLREGARLPAFGDASACMYCSARGLCRKGFWESTAVPALTT
Sequences:
>Translated_957_residues MTPLRFRPGPDFLDQAAAAAWFFLDRCGVSEAGAHVIVPTAAQIPGVRMALDAAARAAGQPRLLPRVLTLGHWLLDLPPE GAPVRSHAARLLAVQQAVRAQDWLRRSFGAQTESAAWGLAQTLLSICDELNTRWLEDVAVSDGEAMDGTDRAALLQGALE RTYAHLSERMLGEESRIVLAFWQALSGPDDPLPSRRRALRRLAQQLSGPVVWIAPTPPTPIEGAFLRDADELVPVLEIGY DWSGAAEAQEPGWYDTLISLWPEARISDAADAPAFTPALPTLPEGRPAIRVIGTARFEDEAAAAADQLVQWLNAGRRNIA LVAHDRVVARRVRALLARAGAPVRDETGWKLSTTRAAAALMRWFDLLVRDGDTAALLDLLKSPFCLPDFPDRGAAIALIE RQVRRDNVSGGWDRLRHLPRALPAALADADADDTEIKRAEAVRRSAGELLTILADEAARWPRGLAQHPLSMWLGCLDGTL DALGMRAALAADEAGRQLLDALARLQDLPSDETSSHATLSQAEFRAMLSALLESVAYKEPSAASAARITILPLNGARMRR FDGVVVVGCDDAQLPSSAAELMFFSNQMRRELQLEDRESRFAQQARDLAEVLLNNDDVVLTWQRLGGRGEPKHVSGWIER LSACCARAGVAIEASMAPLVHQTFAETQGMPAPAAPQLVPARWSAQAYNMLRRCPYQFFAGRMLGLAGLDAVSDDLEKRD IGELLHRVLLRYHRELLARRERGETVPEAERLDRLREISDDVFGALMAEDGNAIGYYRRWCEVLPSYVTWQTEREAQGWF WRGGEIDAGVDLPMPDGKPIRLNGRIDRLDQGPGGAHAVLDYKTQSAARLKRKTSEVEEDCQLPFYGLLRADAVGGSWVA LEGVRDGAASLQREVDLPDFDAAVAWLERQLRDDVMRLREGARLPAFGDASACMYCSARGLCRKGFWESTAVPALTT >Mature_956_residues TPLRFRPGPDFLDQAAAAAWFFLDRCGVSEAGAHVIVPTAAQIPGVRMALDAAARAAGQPRLLPRVLTLGHWLLDLPPEG APVRSHAARLLAVQQAVRAQDWLRRSFGAQTESAAWGLAQTLLSICDELNTRWLEDVAVSDGEAMDGTDRAALLQGALER TYAHLSERMLGEESRIVLAFWQALSGPDDPLPSRRRALRRLAQQLSGPVVWIAPTPPTPIEGAFLRDADELVPVLEIGYD WSGAAEAQEPGWYDTLISLWPEARISDAADAPAFTPALPTLPEGRPAIRVIGTARFEDEAAAAADQLVQWLNAGRRNIAL VAHDRVVARRVRALLARAGAPVRDETGWKLSTTRAAAALMRWFDLLVRDGDTAALLDLLKSPFCLPDFPDRGAAIALIER QVRRDNVSGGWDRLRHLPRALPAALADADADDTEIKRAEAVRRSAGELLTILADEAARWPRGLAQHPLSMWLGCLDGTLD ALGMRAALAADEAGRQLLDALARLQDLPSDETSSHATLSQAEFRAMLSALLESVAYKEPSAASAARITILPLNGARMRRF DGVVVVGCDDAQLPSSAAELMFFSNQMRRELQLEDRESRFAQQARDLAEVLLNNDDVVLTWQRLGGRGEPKHVSGWIERL SACCARAGVAIEASMAPLVHQTFAETQGMPAPAAPQLVPARWSAQAYNMLRRCPYQFFAGRMLGLAGLDAVSDDLEKRDI GELLHRVLLRYHRELLARRERGETVPEAERLDRLREISDDVFGALMAEDGNAIGYYRRWCEVLPSYVTWQTEREAQGWFW RGGEIDAGVDLPMPDGKPIRLNGRIDRLDQGPGGAHAVLDYKTQSAARLKRKTSEVEEDCQLPFYGLLRADAVGGSWVAL EGVRDGAASLQREVDLPDFDAAVAWLERQLRDDVMRLREGARLPAFGDASACMYCSARGLCRKGFWESTAVPALTT
Specific function: Unknown
COG id: COG3893
COG function: function code L; Inactivated superfamily I helicase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 104995; Mature: 104864
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPLRFRPGPDFLDQAAAAAWFFLDRCGVSEAGAHVIVPTAAQIPGVRMALDAAARAAGQ CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHCCCHHHHHHHHHHHCCC PRLLPRVLTLGHWLLDLPPEGAPVRSHAARLLAVQQAVRAQDWLRRSFGAQTESAAWGLA CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH QTLLSICDELNTRWLEDVAVSDGEAMDGTDRAALLQGALERTYAHLSERMLGEESRIVLA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH FWQALSGPDDPLPSRRRALRRLAQQLSGPVVWIAPTPPTPIEGAFLRDADELVPVLEIGY HHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCHHHHHHHHHCCC DWSGAAEAQEPGWYDTLISLWPEARISDAADAPAFTPALPTLPEGRPAIRVIGTARFEDE CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHH AAAAADQLVQWLNAGRRNIALVAHDRVVARRVRALLARAGAPVRDETGWKLSTTRAAAAL HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHH MRWFDLLVRDGDTAALLDLLKSPFCLPDFPDRGAAIALIERQVRRDNVSGGWDRLRHLPR HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH ALPAALADADADDTEIKRAEAVRRSAGELLTILADEAARWPRGLAQHPLSMWLGCLDGTL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHH DALGMRAALAADEAGRQLLDALARLQDLPSDETSSHATLSQAEFRAMLSALLESVAYKEP HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC SAASAARITILPLNGARMRRFDGVVVVGCDDAQLPSSAAELMFFSNQMRRELQLEDRESR CCCCCEEEEEEECCCCHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH FAQQARDLAEVLLNNDDVVLTWQRLGGRGEPKHVSGWIERLSACCARAGVAIEASMAPLV HHHHHHHHHHHHHCCCCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHH HQTFAETQGMPAPAAPQLVPARWSAQAYNMLRRCPYQFFAGRMLGLAGLDAVSDDLEKRD HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHH IGELLHRVLLRYHRELLARRERGETVPEAERLDRLREISDDVFGALMAEDGNAIGYYRRW HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH CEVLPSYVTWQTEREAQGWFWRGGEIDAGVDLPMPDGKPIRLNGRIDRLDQGPGGAHAVL HHHCCHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEE DYKTQSAARLKRKTSEVEEDCQLPFYGLLRADAVGGSWVALEGVRDGAASLQREVDLPDF ECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCH DAAVAWLERQLRDDVMRLREGARLPAFGDASACMYCSARGLCRKGFWESTAVPALTT HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure TPLRFRPGPDFLDQAAAAAWFFLDRCGVSEAGAHVIVPTAAQIPGVRMALDAAARAAGQ CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHCCCHHHHHHHHHHHCCC PRLLPRVLTLGHWLLDLPPEGAPVRSHAARLLAVQQAVRAQDWLRRSFGAQTESAAWGLA CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH QTLLSICDELNTRWLEDVAVSDGEAMDGTDRAALLQGALERTYAHLSERMLGEESRIVLA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH FWQALSGPDDPLPSRRRALRRLAQQLSGPVVWIAPTPPTPIEGAFLRDADELVPVLEIGY HHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCHHHHHHHHHCCC DWSGAAEAQEPGWYDTLISLWPEARISDAADAPAFTPALPTLPEGRPAIRVIGTARFEDE CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHH AAAAADQLVQWLNAGRRNIALVAHDRVVARRVRALLARAGAPVRDETGWKLSTTRAAAAL HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHH MRWFDLLVRDGDTAALLDLLKSPFCLPDFPDRGAAIALIERQVRRDNVSGGWDRLRHLPR HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH ALPAALADADADDTEIKRAEAVRRSAGELLTILADEAARWPRGLAQHPLSMWLGCLDGTL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHH DALGMRAALAADEAGRQLLDALARLQDLPSDETSSHATLSQAEFRAMLSALLESVAYKEP HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC SAASAARITILPLNGARMRRFDGVVVVGCDDAQLPSSAAELMFFSNQMRRELQLEDRESR CCCCCEEEEEEECCCCHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH FAQQARDLAEVLLNNDDVVLTWQRLGGRGEPKHVSGWIERLSACCARAGVAIEASMAPLV HHHHHHHHHHHHHCCCCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHH HQTFAETQGMPAPAAPQLVPARWSAQAYNMLRRCPYQFFAGRMLGLAGLDAVSDDLEKRD HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHH IGELLHRVLLRYHRELLARRERGETVPEAERLDRLREISDDVFGALMAEDGNAIGYYRRW HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH CEVLPSYVTWQTEREAQGWFWRGGEIDAGVDLPMPDGKPIRLNGRIDRLDQGPGGAHAVL HHHCCHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEE DYKTQSAARLKRKTSEVEEDCQLPFYGLLRADAVGGSWVALEGVRDGAASLQREVDLPDF ECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCH DAAVAWLERQLRDDVMRLREGARLPAFGDASACMYCSARGLCRKGFWESTAVPALTT HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA