BacMap

Definition	Ralstonia eutropha JMP134 chromosome 1, complete sequence.
Accession	NC_007347
Length	3,806,533

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The map label for this gene is yqjQ [H]

Identifier: 73541590

GI number: 73541590

Start: 2085103

End: 2085903

Strand: Direct

Name: yqjQ [H]

Synonym: Reut_A1901

Alternate gene names: 73541590

Gene position: 2085103-2085903 (Clockwise)

Preceding gene: 73541586

Following gene: 73541592

Centisome position: 54.78

GC content: 64.04

Gene sequence:

>801_bases
ATGAACCCGACCACCCACGCTGGCACCGCGCTCGTTACCGGCGCCTCCTCTGGCATCGGCGCTATTTACGCCGACCGCCT
GGCGCGCCGCGGTTACGACCTGATCCTTGTCGCCCGCAGTCGCGACCGCCTCTCCGCTCTCGCCGACCGTCTCACGACTG
AAACGCGCCGCAACGTCGAAGTGATCGGCGCGGACCTGAACGACAGGGACGAACTCGCAGTTGTGGAAAACCGCCTGAGA
GAAGACGAGAGCATCGCGCTGCTGGTCAACAACGCTGGCATCGGCACGCACACCCCGCTGCTGGACAGTGATGTCGATCG
GATGACTCGACTGATCGAACTGAACGTCACGGCCCTCACTAGGCTGACCTACGCTGCTGCGCCGCGCTTCGTCGCACGCG
GCAAGGGCGCGATCATCAACATTGCATCGATCGTAGCCATCGCGCCGGAGATCCTGAATGGCGTGTACGGAGCCAGCAAG
GCGTTTGTGCTGGGGCTCAGCCAGTCGTTGCACCATGAACTGTCTGGCAAGGGCGTGCGTGTGCAGGCCGTGCTGCCGGG
CGCAACTGCCACGGACTTCTGGGCCACGGGAGGCCAGCCAGTCGAGAATTTGGACCCGAGTATCGTGATGTCTGCTACGG
CGCTGGTCGATGCGGCGCTGGTCGGATTCGACCGCGGCGAGTTCGTCACGATCCCGTCCTTGCATGATGTGGCGAAATGG
GAAGCCTACGCAGCAGCACGCATGGCGATGATGGGCGAGCTGTCAACCAGCACGCCTGCGCCGCGCTACCTTGGCGTGTG
A

Upstream 100 bases:

>100_bases
CGAAAAACGTAACGACCTGAATCATGACTATATACGTCATTTACGCCATGCGCAGGGACACCTACGATTCAGGCACAGAA
AACCCCACAGGAGCAACGAC

Downstream 100 bases:

>100_bases
AAACGCCTTCAGCCTATCCGAAACGGCAGGTTCATCCGGAATGCCATCAACCCGTTGCTAAAAAGAGCGGCATCGGTACC
AGAATTGAACTCCCACTATC

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MNPTTHAGTALVTGASSGIGAIYADRLARRGYDLILVARSRDRLSALADRLTTETRRNVEVIGADLNDRDELAVVENRLR
EDESIALLVNNAGIGTHTPLLDSDVDRMTRLIELNVTALTRLTYAAAPRFVARGKGAIINIASIVAIAPEILNGVYGASK
AFVLGLSQSLHHELSGKGVRVQAVLPGATATDFWATGGQPVENLDPSIVMSATALVDAALVGFDRGEFVTIPSLHDVAKW
EAYAAARMAMMGELSTSTPAPRYLGV

Sequences:

>Translated_266_residues
MNPTTHAGTALVTGASSGIGAIYADRLARRGYDLILVARSRDRLSALADRLTTETRRNVEVIGADLNDRDELAVVENRLR
EDESIALLVNNAGIGTHTPLLDSDVDRMTRLIELNVTALTRLTYAAAPRFVARGKGAIINIASIVAIAPEILNGVYGASK
AFVLGLSQSLHHELSGKGVRVQAVLPGATATDFWATGGQPVENLDPSIVMSATALVDAALVGFDRGEFVTIPSLHDVAKW
EAYAAARMAMMGELSTSTPAPRYLGV
>Mature_266_residues
MNPTTHAGTALVTGASSGIGAIYADRLARRGYDLILVARSRDRLSALADRLTTETRRNVEVIGADLNDRDELAVVENRLR
EDESIALLVNNAGIGTHTPLLDSDVDRMTRLIELNVTALTRLTYAAAPRFVARGKGAIINIASIVAIAPEILNGVYGASK
AFVLGLSQSLHHELSGKGVRVQAVLPGATATDFWATGGQPVENLDPSIVMSATALVDAALVGFDRGEFVTIPSLHDVAKW
EAYAAARMAMMGELSTSTPAPRYLGV

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705855, Length=188, Percent_Identity=36.1702127659575, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI4557649, Length=186, Percent_Identity=36.0215053763441, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI226371731, Length=184, Percent_Identity=30.9782608695652, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI7706318, Length=187, Percent_Identity=32.0855614973262, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=32.1052631578947, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI5031737, Length=190, Percent_Identity=32.1052631578947, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=28.9473684210526, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI15277342, Length=193, Percent_Identity=34.7150259067358, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI40254992, Length=187, Percent_Identity=31.5508021390374, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7657478, Length=199, Percent_Identity=31.6582914572864, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082100, Length=208, Percent_Identity=33.1730769230769, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=35.1648351648352, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787335, Length=187, Percent_Identity=34.2245989304813, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI2367175, Length=199, Percent_Identity=31.6582914572864, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082160, Length=192, Percent_Identity=27.0833333333333, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788459, Length=205, Percent_Identity=30.7317073170732, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789208, Length=190, Percent_Identity=30.5263157894737, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786701, Length=200, Percent_Identity=28, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=26.2948207171315, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=193, Percent_Identity=36.2694300518135, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=194, Percent_Identity=34.020618556701, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI25152911, Length=199, Percent_Identity=31.6582914572864, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17559552, Length=196, Percent_Identity=29.5918367346939, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17557668, Length=196, Percent_Identity=29.5918367346939, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI212646214, Length=197, Percent_Identity=30.4568527918782, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=202, Percent_Identity=30.1980198019802, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=191, Percent_Identity=28.7958115183246, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560176, Length=203, Percent_Identity=27.0935960591133, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=199, Percent_Identity=30.6532663316583, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=203, Percent_Identity=30.0492610837438, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=200, Percent_Identity=33.5, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=205, Percent_Identity=28.2926829268293, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=209, Percent_Identity=30.1435406698565, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=207, Percent_Identity=29.951690821256, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=194, Percent_Identity=29.8969072164948, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=194, Percent_Identity=30.4123711340206, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=205, Percent_Identity=31.7073170731707, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=184, Percent_Identity=29.3478260869565, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=198, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=205, Percent_Identity=31.219512195122, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=202, Percent_Identity=28.7128712871287, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=200, Percent_Identity=28.5, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=204, Percent_Identity=27.9411764705882, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=203, Percent_Identity=29.064039408867, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=197, Percent_Identity=28.9340101522843, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6319635, Length=187, Percent_Identity=30.4812834224599, Blast_Score=86, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=33.6734693877551, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=29.0322580645161, Blast_Score=73, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=34.0314136125654, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24584748, Length=186, Percent_Identity=34.9462365591398, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI161076933, Length=186, Percent_Identity=34.9462365591398, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28574402, Length=188, Percent_Identity=32.9787234042553, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24584744, Length=188, Percent_Identity=32.9787234042553, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI28571526, Length=195, Percent_Identity=36.4102564102564, Blast_Score=95, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24584752, Length=187, Percent_Identity=33.6898395721925, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21357041, Length=199, Percent_Identity=33.6683417085427, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI23397609, Length=183, Percent_Identity=36.0655737704918, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24644339, Length=206, Percent_Identity=32.0388349514563, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24648944, Length=203, Percent_Identity=31.5270935960591, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI116007236, Length=200, Percent_Identity=29, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24580925, Length=190, Percent_Identity=32.1052631578947, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007238, Length=187, Percent_Identity=28.8770053475936, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28203; Mature: 28203

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTTHAGTALVTGASSGIGAIYADRLARRGYDLILVARSRDRLSALADRLTTETRRNVE
CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCEE
VIGADLNDRDELAVVENRLREDESIALLVNNAGIGTHTPLLDSDVDRMTRLIELNVTALT
EEECCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHH
RLTYAAAPRFVARGKGAIINIASIVAIAPEILNGVYGASKAFVLGLSQSLHHELSGKGVR
HHHHHHCCHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCHHEEEECCHHHHHHHCCCCEE
VQAVLPGATATDFWATGGQPVENLDPSIVMSATALVDAALVGFDRGEFVTIPSLHDVAKW
EEEEECCCCCCCHHCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHH
EAYAAARMAMMGELSTSTPAPRYLGV
HHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNPTTHAGTALVTGASSGIGAIYADRLARRGYDLILVARSRDRLSALADRLTTETRRNVE
CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCEE
VIGADLNDRDELAVVENRLREDESIALLVNNAGIGTHTPLLDSDVDRMTRLIELNVTALT
EEECCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHH
RLTYAAAPRFVARGKGAIINIASIVAIAPEILNGVYGASKAFVLGLSQSLHHELSGKGVR
HHHHHHCCHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCHHEEEECCHHHHHHHCCCCEE
VQAVLPGATATDFWATGGQPVENLDPSIVMSATALVDAALVGFDRGEFVTIPSLHDVAKW
EEEEECCCCCCCHHCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHH
EAYAAARMAMMGELSTSTPAPRYLGV
HHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]