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The map label for this gene is yhjC [H]

Identifier: 73541313

GI number: 73541313

Start: 1744794

End: 1745705

Strand: Direct

Name: yhjC [H]

Synonym: Reut_A1623

Alternate gene names: 73541313

Gene position: 1744794-1745705 (Clockwise)

Preceding gene: 73541310

Following gene: 73541316

Centisome position: 45.84

GC content: 62.5

Gene sequence:

>912_bases
ATGGATCGTTTTCAGGAAATGCAGGTTTTTGTCCGGATCGCCGATCGGCGCAGCTTTTCGCTGGCGGCGGAGGATCTCCA
GATTCCACGCGCGACGGTGACCAATCTCATCAAGCGGCTGGAGCAGCGCCTCGGCGTCAGGCTGCTGGAGCGCACCACCC
GTCAGGTGCGAATGACGCACGACGGCGAGGCTTACTACCATCGCTGTTTGCGCCTTCTGACCGACCTGGAAGAGGCGGAG
AATTCGTTTCGCGACGCGCCGCCCAAGGGCTTGCTGCGGGTGAACCTGCAGGGGACACTTGCCAGGCATTTCGTCATGCC
GGCCTTGGGTGAGTTCCTGGCACAGTATCCGGACATCACCTTGCATGTCGGCGAGGACGACCGGCTGGTGGACCTGGTTC
GGGAAGGCGTGGACTGCGTACTGCGTGCCGGCGTGTTGCAGGACTCGTCCCTGATCGGGCGGCAGATCGCGTTGTTGGAA
CAGGTCACCGTGGCAAGCCCGGCATACCTTGAGCGGCATGGCGTGCCGAACACGCTGGATGATCTCAAGCACCACTACGC
CGTGAACTACGTTTCCAGCGCGACAGGGCGGCCGAGCGCCCTGGATTTCTACGTTGGCGAGGAAACCGTCGATTTGCAGC
TCACGTCGAAGATCTCGGTGACCGGGGCGGATCTCTATACGGGCGCCGCAATCTCCGGACTTGGGCTCGTACAAGTGCCG
CGGTACCGGATCGAGAAAGAACTGGCCGATGGCCGGCTACGCATCGTCTTGCCTGACAGCCCGCCGCCACGGATGCCTGT
CTCCGTGCTGTATCCGCAGAACCGGCAGCTATCGGCGCGCGTGCGAGTGTTCTCTCAATGGCTGGCGACTCGTTTTGAGG
GTCCGGTATCCCGGCCGAAGGAAAGCCACTGA

Upstream 100 bases:

>100_bases
GCTTTAACTTTCTCCCGGGATTGATCTATCCTGCATTTTTGCGGCAGGGCCTGCGAATCTGGGCGCCGCACGTTATGTCG
TTGCTCAACAATTGGCGCTG

Downstream 100 bases:

>100_bases
CGCGCGCCAGCGTCAGCGCTGAAGCCTGCCGCTGGCTTCCACCAGAGCCATCAGCGCAGCCATGCATGGGCTGGCCGCCG
CCAGCATGCGCTGTTCGTCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDRFQEMQVFVRIADRRSFSLAAEDLQIPRATVTNLIKRLEQRLGVRLLERTTRQVRMTHDGEAYYHRCLRLLTDLEEAE
NSFRDAPPKGLLRVNLQGTLARHFVMPALGEFLAQYPDITLHVGEDDRLVDLVREGVDCVLRAGVLQDSSLIGRQIALLE
QVTVASPAYLERHGVPNTLDDLKHHYAVNYVSSATGRPSALDFYVGEETVDLQLTSKISVTGADLYTGAAISGLGLVQVP
RYRIEKELADGRLRIVLPDSPPPRMPVSVLYPQNRQLSARVRVFSQWLATRFEGPVSRPKESH

Sequences:

>Translated_303_residues
MDRFQEMQVFVRIADRRSFSLAAEDLQIPRATVTNLIKRLEQRLGVRLLERTTRQVRMTHDGEAYYHRCLRLLTDLEEAE
NSFRDAPPKGLLRVNLQGTLARHFVMPALGEFLAQYPDITLHVGEDDRLVDLVREGVDCVLRAGVLQDSSLIGRQIALLE
QVTVASPAYLERHGVPNTLDDLKHHYAVNYVSSATGRPSALDFYVGEETVDLQLTSKISVTGADLYTGAAISGLGLVQVP
RYRIEKELADGRLRIVLPDSPPPRMPVSVLYPQNRQLSARVRVFSQWLATRFEGPVSRPKESH
>Mature_303_residues
MDRFQEMQVFVRIADRRSFSLAAEDLQIPRATVTNLIKRLEQRLGVRLLERTTRQVRMTHDGEAYYHRCLRLLTDLEEAE
NSFRDAPPKGLLRVNLQGTLARHFVMPALGEFLAQYPDITLHVGEDDRLVDLVREGVDCVLRAGVLQDSSLIGRQIALLE
QVTVASPAYLERHGVPNTLDDLKHHYAVNYVSSATGRPSALDFYVGEETVDLQLTSKISVTGADLYTGAAISGLGLVQVP
RYRIEKELADGRLRIVLPDSPPPRMPVSVLYPQNRQLSARVRVFSQWLATRFEGPVSRPKESH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=37.1134020618557, Blast_Score=201, Evalue=7e-53,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=33.448275862069, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=29.6296296296296, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=29.757785467128, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787589, Length=298, Percent_Identity=28.8590604026846, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=30.794701986755, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788706, Length=253, Percent_Identity=27.6679841897233, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789440, Length=301, Percent_Identity=24.5847176079734, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1789173, Length=285, Percent_Identity=25.2631578947368, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786448, Length=273, Percent_Identity=23.0769230769231, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI157672245, Length=137, Percent_Identity=30.6569343065693, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI145693105, Length=121, Percent_Identity=33.0578512396694, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=140, Percent_Identity=32.8571428571429, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790011, Length=265, Percent_Identity=24.5283018867925, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34165; Mature: 34165

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFQEMQVFVRIADRRSFSLAAEDLQIPRATVTNLIKRLEQRLGVRLLERTTRQVRMTH
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
DGEAYYHRCLRLLTDLEEAENSFRDAPPKGLLRVNLQGTLARHFVMPALGEFLAQYPDIT
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEE
LHVGEDDRLVDLVREGVDCVLRAGVLQDSSLIGRQIALLEQVTVASPAYLERHGVPNTLD
EEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHH
DLKHHYAVNYVSSATGRPSALDFYVGEETVDLQLTSKISVTGADLYTGAAISGLGLVQVP
HHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEEECEEEEECCHHHCCHHHCCCCCCCCC
RYRIEKELADGRLRIVLPDSPPPRMPVSVLYPQNRQLSARVRVFSQWLATRFEGPVSRPK
HHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
ESH
CCC
>Mature Secondary Structure
MDRFQEMQVFVRIADRRSFSLAAEDLQIPRATVTNLIKRLEQRLGVRLLERTTRQVRMTH
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
DGEAYYHRCLRLLTDLEEAENSFRDAPPKGLLRVNLQGTLARHFVMPALGEFLAQYPDIT
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEE
LHVGEDDRLVDLVREGVDCVLRAGVLQDSSLIGRQIALLEQVTVASPAYLERHGVPNTLD
EEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHH
DLKHHYAVNYVSSATGRPSALDFYVGEETVDLQLTSKISVTGADLYTGAAISGLGLVQVP
HHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEEECEEEEECCHHHCCHHHCCCCCCCCC
RYRIEKELADGRLRIVLPDSPPPRMPVSVLYPQNRQLSARVRVFSQWLATRFEGPVSRPK
HHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
ESH
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]