| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is bam [H]
Identifier: 73541309
GI number: 73541309
Start: 1740642
End: 1742099
Strand: Direct
Name: bam [H]
Synonym: Reut_A1619
Alternate gene names: 73541309
Gene position: 1740642-1742099 (Clockwise)
Preceding gene: 73541308
Following gene: 73541310
Centisome position: 45.73
GC content: 62.55
Gene sequence:
>1458_bases ATGTCAGCGAATCCAATGCAAAGTAGCCACTGTACGATCGACGCACCCGAGAACGATCTCTGGCGCTGGTCCGGCGCCGA AATTGCGACTGCGGTTTGTCGAGGGGATGTTTCGGCCGTCGAAGTGGTGGAAAGCGTCTACGCGCGTATCGCCGCAGTCA ATCCCATGATCAACGGCATTGTCCATATGGACAGGGAGCACGCGTTGACGGATGCCGGTGCGCTCGACCGGCGGCGCCAG GCCGGCGATCCACTGGGGCCGCTTGCCGGCGTGCCGGTCTCGATCAAGCTTAACGTTGACGTCGCCGGTGAGGCGACAAG CAATGGAAATCCGCTGTGGCTTGATCGCATTGCTGAAGCGGACAGTGGCGTGGTTTCCAACCTGCGCCGTGCGGGGGCCG TGGTCATAGGACGGACAAATGCTCCGCCGCTTTCTTTCCGCTGGTTCACGGAAAACCCCATTTATGGACGAACTCATAAC CCATGGTCGCCGGCAGTCACCTCGGGCGGCTCAAGCGGGGGCGCCGGTGCTGCGGTAGCGAGCGGGATGGGGCCGATCGC GCATGGCACTGACATTGCGGGATCCATCCGCTATCCGGCGTTTGTCAACGGTGTCGTCGGCTTGCGAGCAACTACGGGAC GCATCCCCGGATTCCAGGCCACTGCGCCACAGCGCTTCTTTGGACTTCAGGCGATGTCTGCGCAGGGCCCAATCGCACGC ACGGTTTCGGATGCGCGGCTCGGACTGGAGGCGATGGCCAGCGACGGCGGCATTGACCCGGTCTGGGTCGATGCCCGCCT GAATTACGATGACGATGAGACGCCAACACGCGTTGCGCTGGTAGACGAGATCCGTGGCATCGATATCAGCCCGGAGATTC AACAAGCGCTCTCATCGGCCGCCGCGGCGCTGATCGATGCAGGTTACACGGTCGAACGCGTCGCGTTGCCAGACCTCAAG CGCGGGATGGAGTTGTGGGAAAGCATCGTCATGTCCGAATGCAACCTGGGCATGCTTGCCGCCGTGGATGCAATTGGCGA CGCGACCATTAGTACGCCGGTCCGCAACATGGCCGCCTGCGCGCCTGAGCCAAGCCTGGCTGGGTATGCCGCAGCAATCG CTTCACGCGATGAAATGCGCCGGAGCTGGAATATCTTGTTCCAGCGCCATCCGCTGGTGCTCATGCCTACCTCGTGTCGC CAGCCACTGCCGTGGGGCGCAGATCAGGGCTCAGTCGATGAAATGCGTCGCTTGCTGGAAATACAGAGCCCGCTTATGGC GGTTGCCGTGTGTGGGTTGCCAGGGCTGCACGTCCCGACAGGGCTGTCACAGGGATTGCCTGTCGGCGTCCAGCTCGTTG CACCGGCATTCCGCGAAATGCGGCTGTTGCACGCGGGCGCCATGATCGAGGCGGCCCACGGAACACTGACTCAGCAGCTT TGGGAAAGGCCTTGGTAG
Upstream 100 bases:
>100_bases TGCAGACTTGATCCGCGAGCACGATGCGGGTTGCTCGCTCTGGTGTCCATCAATGTCCGCAACGATTCTCACGTTACCAG CGGACACGAGATAACAAATA
Downstream 100 bases:
>100_bases CGCACCCACTTCCCAATCCACGTAAACGTCATTCCAGTAAAGGTCATTCAAATGGATCGTCGACTACTGATGCTGGCCCT CGGCATGTTTGCCATGGGAA
Product: amidase
Products: NA
Alternate protein names: IAH; Indole-3-acetamide hydrolase [H]
Number of amino acids: Translated: 485; Mature: 484
Protein sequence:
>485_residues MSANPMQSSHCTIDAPENDLWRWSGAEIATAVCRGDVSAVEVVESVYARIAAVNPMINGIVHMDREHALTDAGALDRRRQ AGDPLGPLAGVPVSIKLNVDVAGEATSNGNPLWLDRIAEADSGVVSNLRRAGAVVIGRTNAPPLSFRWFTENPIYGRTHN PWSPAVTSGGSSGGAGAAVASGMGPIAHGTDIAGSIRYPAFVNGVVGLRATTGRIPGFQATAPQRFFGLQAMSAQGPIAR TVSDARLGLEAMASDGGIDPVWVDARLNYDDDETPTRVALVDEIRGIDISPEIQQALSSAAAALIDAGYTVERVALPDLK RGMELWESIVMSECNLGMLAAVDAIGDATISTPVRNMAACAPEPSLAGYAAAIASRDEMRRSWNILFQRHPLVLMPTSCR QPLPWGADQGSVDEMRRLLEIQSPLMAVAVCGLPGLHVPTGLSQGLPVGVQLVAPAFREMRLLHAGAMIEAAHGTLTQQL WERPW
Sequences:
>Translated_485_residues MSANPMQSSHCTIDAPENDLWRWSGAEIATAVCRGDVSAVEVVESVYARIAAVNPMINGIVHMDREHALTDAGALDRRRQ AGDPLGPLAGVPVSIKLNVDVAGEATSNGNPLWLDRIAEADSGVVSNLRRAGAVVIGRTNAPPLSFRWFTENPIYGRTHN PWSPAVTSGGSSGGAGAAVASGMGPIAHGTDIAGSIRYPAFVNGVVGLRATTGRIPGFQATAPQRFFGLQAMSAQGPIAR TVSDARLGLEAMASDGGIDPVWVDARLNYDDDETPTRVALVDEIRGIDISPEIQQALSSAAAALIDAGYTVERVALPDLK RGMELWESIVMSECNLGMLAAVDAIGDATISTPVRNMAACAPEPSLAGYAAAIASRDEMRRSWNILFQRHPLVLMPTSCR QPLPWGADQGSVDEMRRLLEIQSPLMAVAVCGLPGLHVPTGLSQGLPVGVQLVAPAFREMRLLHAGAMIEAAHGTLTQQL WERPW >Mature_484_residues SANPMQSSHCTIDAPENDLWRWSGAEIATAVCRGDVSAVEVVESVYARIAAVNPMINGIVHMDREHALTDAGALDRRRQA GDPLGPLAGVPVSIKLNVDVAGEATSNGNPLWLDRIAEADSGVVSNLRRAGAVVIGRTNAPPLSFRWFTENPIYGRTHNP WSPAVTSGGSSGGAGAAVASGMGPIAHGTDIAGSIRYPAFVNGVVGLRATTGRIPGFQATAPQRFFGLQAMSAQGPIART VSDARLGLEAMASDGGIDPVWVDARLNYDDDETPTRVALVDEIRGIDISPEIQQALSSAAAALIDAGYTVERVALPDLKR GMELWESIVMSECNLGMLAAVDAIGDATISTPVRNMAACAPEPSLAGYAAAIASRDEMRRSWNILFQRHPLVLMPTSCRQ PLPWGADQGSVDEMRRLLEIQSPLMAVAVCGLPGLHVPTGLSQGLPVGVQLVAPAFREMRLLHAGAMIEAAHGTLTQQLW ERPW
Specific function: Hydrolyzes indole-3-acetamide (IAM) into indole-3-acetic acid (IAA) [H]
COG id: COG0154
COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amidase family [H]
Homologues:
Organism=Homo sapiens, GI195972892, Length=487, Percent_Identity=27.9260780287474, Blast_Score=151, Evalue=1e-36, Organism=Homo sapiens, GI222831590, Length=497, Percent_Identity=23.7424547283702, Blast_Score=93, Evalue=6e-19, Organism=Homo sapiens, GI166795287, Length=233, Percent_Identity=34.7639484978541, Blast_Score=79, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17537465, Length=510, Percent_Identity=28.6274509803922, Blast_Score=126, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17556264, Length=298, Percent_Identity=30.8724832214765, Blast_Score=109, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17538252, Length=314, Percent_Identity=28.343949044586, Blast_Score=95, Evalue=8e-20, Organism=Caenorhabditis elegans, GI71990152, Length=301, Percent_Identity=28.9036544850498, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17556276, Length=203, Percent_Identity=33.0049261083744, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17556278, Length=203, Percent_Identity=33.0049261083744, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538254, Length=297, Percent_Identity=27.6094276094276, Blast_Score=78, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6320448, Length=241, Percent_Identity=30.2904564315353, Blast_Score=82, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6319685, Length=161, Percent_Identity=37.2670807453416, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI24652985, Length=506, Percent_Identity=25.4940711462451, Blast_Score=134, Evalue=1e-31, Organism=Drosophila melanogaster, GI19922090, Length=506, Percent_Identity=25.4940711462451, Blast_Score=134, Evalue=1e-31, Organism=Drosophila melanogaster, GI24652981, Length=506, Percent_Identity=25.4940711462451, Blast_Score=134, Evalue=1e-31, Organism=Drosophila melanogaster, GI24652983, Length=506, Percent_Identity=25.4940711462451, Blast_Score=134, Evalue=1e-31, Organism=Drosophila melanogaster, GI24644968, Length=500, Percent_Identity=27.2, Blast_Score=128, Evalue=7e-30, Organism=Drosophila melanogaster, GI24648435, Length=461, Percent_Identity=26.6811279826464, Blast_Score=119, Evalue=5e-27, Organism=Drosophila melanogaster, GI24648437, Length=461, Percent_Identity=26.6811279826464, Blast_Score=119, Evalue=5e-27, Organism=Drosophila melanogaster, GI45550774, Length=468, Percent_Identity=25.8547008547009, Blast_Score=119, Evalue=5e-27, Organism=Drosophila melanogaster, GI24648441, Length=429, Percent_Identity=25.4079254079254, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24648439, Length=429, Percent_Identity=25.4079254079254, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24648113, Length=495, Percent_Identity=24.8484848484848, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI21356731, Length=232, Percent_Identity=29.3103448275862, Blast_Score=89, Evalue=6e-18, Organism=Drosophila melanogaster, GI161078093, Length=518, Percent_Identity=24.1312741312741, Blast_Score=87, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000120 - InterPro: IPR020556 [H]
Pfam domain/function: PF01425 Amidase [H]
EC number: NA
Molecular weight: Translated: 51288; Mature: 51157
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS00571 AMIDASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSANPMQSSHCTIDAPENDLWRWSGAEIATAVCRGDVSAVEVVESVYARIAAVNPMINGI CCCCCCCCCCEEEECCCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH VHMDREHALTDAGALDRRRQAGDPLGPLAGVPVSIKLNVDVAGEATSNGNPLWLDRIAEA HHCCHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEHHHHHCC DSGVVSNLRRAGAVVIGRTNAPPLSFRWFTENPIYGRTHNPWSPAVTSGGSSGGAGAAVA CCHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH SGMGPIAHGTDIAGSIRYPAFVNGVVGLRATTGRIPGFQATAPQRFFGLQAMSAQGPIAR CCCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCHHH TVSDARLGLEAMASDGGIDPVWVDARLNYDDDETPTRVALVDEIRGIDISPEIQQALSSA HHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEHHHCCCCCCHHHHHHHHHH AAALIDAGYTVERVALPDLKRGMELWESIVMSECNLGMLAAVDAIGDATISTPVRNMAAC HHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHC APEPSLAGYAAAIASRDEMRRSWNILFQRHPLVLMPTSCRQPLPWGADQGSVDEMRRLLE CCCCCHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH IQSPLMAVAVCGLPGLHVPTGLSQGLPVGVQLVAPAFREMRLLHAGAMIEAAHGTLTQQL HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH WERPW HCCCC >Mature Secondary Structure SANPMQSSHCTIDAPENDLWRWSGAEIATAVCRGDVSAVEVVESVYARIAAVNPMINGI CCCCCCCCCEEEECCCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH VHMDREHALTDAGALDRRRQAGDPLGPLAGVPVSIKLNVDVAGEATSNGNPLWLDRIAEA HHCCHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEHHHHHCC DSGVVSNLRRAGAVVIGRTNAPPLSFRWFTENPIYGRTHNPWSPAVTSGGSSGGAGAAVA CCHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH SGMGPIAHGTDIAGSIRYPAFVNGVVGLRATTGRIPGFQATAPQRFFGLQAMSAQGPIAR CCCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCHHH TVSDARLGLEAMASDGGIDPVWVDARLNYDDDETPTRVALVDEIRGIDISPEIQQALSSA HHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEHHHCCCCCCHHHHHHHHHH AAALIDAGYTVERVALPDLKRGMELWESIVMSECNLGMLAAVDAIGDATISTPVRNMAAC HHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHC APEPSLAGYAAAIASRDEMRRSWNILFQRHPLVLMPTSCRQPLPWGADQGSVDEMRRLLE CCCCCHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH IQSPLMAVAVCGLPGLHVPTGLSQGLPVGVQLVAPAFREMRLLHAGAMIEAAHGTLTQQL HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH WERPW HCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]