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The map label for this gene is yciO [H]

Identifier: 73540803

GI number: 73540803

Start: 1194709

End: 1195332

Strand: Direct

Name: yciO [H]

Synonym: Reut_A1101

Alternate gene names: 73540803

Gene position: 1194709-1195332 (Clockwise)

Preceding gene: 73540802

Following gene: 73540804

Centisome position: 31.39

GC content: 67.79

Gene sequence:

>624_bases
ATGTCCCAGTACTTCGAAATCCATCCGCAGAACCCGCAGCCGCGGCTTATCAAGCAGGCGGTGCAGATCATCCGCCAGGG
CGGGCTGATCGCGCTGCCGACCGACTCCAGTTACGCGCTGGGCTGCCAGCTTGACGACAAGGCCGCCGTGGAGCGCCTGC
GCCGGCTGCGCGGCATCGACGACAAGCACCACCTCACGCTGATGTGCAGCGACCTGTCCGAGCTGGGCAGTTTCGCGCGC
GTCGACAACCGGCAGTACCGCTGGATCAAGGGCGCTACGCCGGGCCCTTATGTCTTCATCCTGGAGGCCACCAAGGAGGT
GCCGCGGCGGCTGTCGCACCCGTCGCGAAAGACCATCGGCGTGCGCGTGCCCGAGCACGCCATCCCGCTGGCGCTGCTGG
CCGACGCCGGCGAGCCGCTGCTGACGGCCACGCTTCAGTTGCCCGGCGACGAGGAGCCGATGAACGACCCCGCGGAAATC
CGTGCCAGGCTTGAAAAGCTGCTGGATCTCGTCATCTGCGGCGGCCCGGCGCCGGCACAGCCCACGACCGTGATTGACCT
GACCAGTGGAGAGCCCGAGCTCGTGCGCCAGGGAAGGGGCGATATCGCACGGTTCGGTCTCTGA

Upstream 100 bases:

>100_bases
ATGGCACGACTGGTAGTCTCGCAGGCCGCCGGGCAGGCACCGCCGAAAGGACATTGCCGCCGGGCACGAACTTCGTCAGA
ACCCGTCCCCGAGCCCGGCC

Downstream 100 bases:

>100_bases
ATTCGTGCCGCATGTGATGCGGCGGCCAGCCCGCCCGGTACAATAAGTCTCATGGATTCCTCCCTCATTCAGACCTTTGC
CGTCTATGCGCTGCCAGTGC

Product: Sua5/YciO/YrdC/YwlC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSQYFEIHPQNPQPRLIKQAVQIIRQGGLIALPTDSSYALGCQLDDKAAVERLRRLRGIDDKHHLTLMCSDLSELGSFAR
VDNRQYRWIKGATPGPYVFILEATKEVPRRLSHPSRKTIGVRVPEHAIPLALLADAGEPLLTATLQLPGDEEPMNDPAEI
RARLEKLLDLVICGGPAPAQPTTVIDLTSGEPELVRQGRGDIARFGL

Sequences:

>Translated_207_residues
MSQYFEIHPQNPQPRLIKQAVQIIRQGGLIALPTDSSYALGCQLDDKAAVERLRRLRGIDDKHHLTLMCSDLSELGSFAR
VDNRQYRWIKGATPGPYVFILEATKEVPRRLSHPSRKTIGVRVPEHAIPLALLADAGEPLLTATLQLPGDEEPMNDPAEI
RARLEKLLDLVICGGPAPAQPTTVIDLTSGEPELVRQGRGDIARFGL
>Mature_206_residues
SQYFEIHPQNPQPRLIKQAVQIIRQGGLIALPTDSSYALGCQLDDKAAVERLRRLRGIDDKHHLTLMCSDLSELGSFARV
DNRQYRWIKGATPGPYVFILEATKEVPRRLSHPSRKTIGVRVPEHAIPLALLADAGEPLLTATLQLPGDEEPMNDPAEIR
ARLEKLLDLVICGGPAPAQPTTVIDLTSGEPELVRQGRGDIARFGL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=57.0731707317073, Blast_Score=240, Evalue=4e-65,
Organism=Escherichia coli, GI2367210, Length=192, Percent_Identity=27.6041666666667, Blast_Score=65, Evalue=2e-12,
Organism=Drosophila melanogaster, GI78707274, Length=188, Percent_Identity=27.6595744680851, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22836; Mature: 22704

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQYFEIHPQNPQPRLIKQAVQIIRQGGLIALPTDSSYALGCQLDDKAAVERLRRLRGID
CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHCCC
DKHHLTLMCSDLSELGSFARVDNRQYRWIKGATPGPYVFILEATKEVPRRLSHPSRKTIG
CCCEEEEEEHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCHHHHHHHCCCCCCEEE
VRVPEHAIPLALLADAGEPLLTATLQLPGDEEPMNDPAEIRARLEKLLDLVICGGPAPAQ
EECCCHHCCCCEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCC
PTTVIDLTSGEPELVRQGRGDIARFGL
CEEEEEECCCCHHHHHCCCCCCHHCCC
>Mature Secondary Structure 
SQYFEIHPQNPQPRLIKQAVQIIRQGGLIALPTDSSYALGCQLDDKAAVERLRRLRGID
CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHCCC
DKHHLTLMCSDLSELGSFARVDNRQYRWIKGATPGPYVFILEATKEVPRRLSHPSRKTIG
CCCEEEEEEHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCHHHHHHHCCCCCCEEE
VRVPEHAIPLALLADAGEPLLTATLQLPGDEEPMNDPAEIRARLEKLLDLVICGGPAPAQ
EECCCHHCCCCEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCC
PTTVIDLTSGEPELVRQGRGDIARFGL
CEEEEEECCCCHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]