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The map label for this gene is orn [H]

Identifier: 73540610

GI number: 73540610

Start: 989329

End: 989961

Strand: Direct

Name: orn [H]

Synonym: Reut_A0907

Alternate gene names: 73540610

Gene position: 989329-989961 (Clockwise)

Preceding gene: 73540606

Following gene: 73540611

Centisome position: 25.99

GC content: 62.4

Gene sequence:

>633_bases
ATGACAAGCCAATCCACCGCCAAATCCGTCAAGAGTGAAAACAACCTGGTCTGGTTGGACATGGAAATGACCGGCCTGTC
GCCGGATAGCGACCGCATCATCGAGGTCGCGGTCGTCGTGACCGACTCCGAACTCAACATCCTGGCCGAAGGCCCGGTGC
TGGTGATCCACCAGTCCGACGCCGTGCTCGACGGCATGGACAACTGGAACAAGGGCACCCATGGCCGCTCGGGCCTGATC
GACAAGGTCAAGGCCTCCACGCTGACCGAAGAGCAGGCCGAAGCCGAGCTGCTGGCGTTCCTCAAGCGCTGGGTGCCGGC
CAGCAAGTCGCCGATGTGCGGCAACTCGATCTGCCAGGACCGCCGCTTCATGGCGCGCTACATGCCCAAGCTCGAAGCTT
TTTTCCACTACCGGAACCTTGACGTGTCGACGCTCAAGGAGCTGTGCAAGCGCTGGGAGCCGGCCATCCACAAGGGTTTC
GTCAAGCGCCAGCTGCATACGGCGCTCGCCGACATTCTCGAATCGGTCGAGGAACTGCGCTACTACCGCACGCACTTTAT
CCGCCATACGGCAGCTACGCCCGCCGCACCTGCTGCACCTGCCGAACCGGCCGCTGACAGCTCCGCCCAATAA

Upstream 100 bases:

>100_bases
TGCGCGCTGCCACGGCGGACGGATATGCGAGAATTATAAGTTGTTCGCGCGCGCGGGCCTTCCGCGGCGCTTTTTCTTTG
AGCCAGACACCGCAGTCCAC

Downstream 100 bases:

>100_bases
ACAAGAACCGGCGGACCGGCCCGCGGCCGGTCCGCCGCCCGCCTGTCTCGCACAGGCCGCCCGATTTCCGTCCCGCCATC
CCCATGTTTGCCCGCATCGT

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTSQSTAKSVKSENNLVWLDMEMTGLSPDSDRIIEVAVVVTDSELNILAEGPVLVIHQSDAVLDGMDNWNKGTHGRSGLI
DKVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQDRRFMARYMPKLEAFFHYRNLDVSTLKELCKRWEPAIHKGF
VKRQLHTALADILESVEELRYYRTHFIRHTAATPAAPAAPAEPAADSSAQ

Sequences:

>Translated_210_residues
MTSQSTAKSVKSENNLVWLDMEMTGLSPDSDRIIEVAVVVTDSELNILAEGPVLVIHQSDAVLDGMDNWNKGTHGRSGLI
DKVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQDRRFMARYMPKLEAFFHYRNLDVSTLKELCKRWEPAIHKGF
VKRQLHTALADILESVEELRYYRTHFIRHTAATPAAPAAPAEPAADSSAQ
>Mature_209_residues
TSQSTAKSVKSENNLVWLDMEMTGLSPDSDRIIEVAVVVTDSELNILAEGPVLVIHQSDAVLDGMDNWNKGTHGRSGLID
KVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQDRRFMARYMPKLEAFFHYRNLDVSTLKELCKRWEPAIHKGFV
KRQLHTALADILESVEELRYYRTHFIRHTAATPAAPAAPAEPAADSSAQ

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=49.1329479768786, Blast_Score=183, Evalue=8e-47,
Organism=Escherichia coli, GI87082382, Length=177, Percent_Identity=63.2768361581921, Blast_Score=248, Evalue=2e-67,
Organism=Caenorhabditis elegans, GI17557752, Length=184, Percent_Identity=46.195652173913, Blast_Score=167, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6323088, Length=182, Percent_Identity=39.010989010989, Blast_Score=121, Evalue=6e-29,
Organism=Drosophila melanogaster, GI21355135, Length=177, Percent_Identity=42.3728813559322, Blast_Score=165, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 23410; Mature: 23279

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSQSTAKSVKSENNLVWLDMEMTGLSPDSDRIIEVAVVVTDSELNILAEGPVLVIHQSD
CCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCEEEECCCEEEEECCC
AVLDGMDNWNKGTHGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQD
CHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
RRFMARYMPKLEAFFHYRNLDVSTLKELCKRWEPAIHKGFVKRQLHTALADILESVEELR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YYRTHFIRHTAATPAAPAAPAEPAADSSAQ
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSQSTAKSVKSENNLVWLDMEMTGLSPDSDRIIEVAVVVTDSELNILAEGPVLVIHQSD
CCHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCEEEECCCEEEEECCC
AVLDGMDNWNKGTHGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQD
CHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
RRFMARYMPKLEAFFHYRNLDVSTLKELCKRWEPAIHKGFVKRQLHTALADILESVEELR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YYRTHFIRHTAATPAAPAAPAEPAADSSAQ
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]