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The map label for this gene is 73539710

Identifier: 73539710

GI number: 73539710

Start: 6870

End: 7844

Strand: Reverse

Name: 73539710

Synonym: Reut_A0004

Alternate gene names: NA

Gene position: 7844-6870 (Counterclockwise)

Preceding gene: 73539711

Following gene: NA

Centisome position: 0.21

GC content: 46.97

Gene sequence:

>975_bases
ATGCCAGAAAGCGAAGATTTATTGGCTCTCTTAAACATATGTGAAATTGAGAGCAGCAACACCCCAGTGCTTTTCAGCGT
GCTTGGCTCGCCGGACAAGTTCTACAGATCCTTCAAGATCCCGAAACGAAACGGAGGCTTTCGTGTCATCGACAGCCCCT
ATCCGTCCTTGGAAATAATTCAGCGGAGCATCTTGAGAAATGTATTATCGAATTTTCCCGCTCACCCAAACGCGTATGCC
TTTATAAAGGGAAGGAATGCCATTACCCATGCGTCGCACCACCTAGCATGCCGGGAACTGATCACGCTCGATATAAAGGA
TTTCTTTCCAAGTATCACGCGTCAGATGGTAATCGATGCCCTTATCGAGAATGGCTTGGCTAATGGCGTCGCAAACTATA
TATCGTTACTCTGCTGCTTGAACGGCACACTTCCTCAAGGTGCCTGCACAAGCCCTGCATTGAGCAACCTTGTATTCGAG
CGGATTGACGAGCGACTTAGTCGCCTGGCAAAGACTCTGAAGCTCAAATACTCCAGATACGCCGATGATTTGGCATTCTC
TGGAGATGCGATACCGCGAGATATGCCGCAGTTAATCGAGCGCATCCTGGAGTCCAGGGATCTCAAATTAAACAAGGAAA
AAATCAGATTAAAGATCGCCGGAGCGAAGAAGATAATTACCGGCGTTTCGATATCATCGGGAACCCTGAAGGCACCAAGA
GAATTTAAGCGCCTCCTTCGCACTCAAATATATGAGTTGGAGAAGAATATTGACGATATCTCACAAATGAGATCTTTTGA
TCCCTTGGTATATGAGAGAGTTCTTGGTCGACTAAATTACTTGCTTCAGATCGAGCCCAAGAACGCATTTGCTCTACAGA
AAAAGGCCTCACTGAGTCAACATCACCAACGCTTTTTGGCGTTATCTAGTGGCCAATGGCCTGCACTTTTTCCGGACGCC
GATTTGGCAGCATGA

Upstream 100 bases:

>100_bases
ATGAATTTACTCTGCTTCTGCGAAGCAGAGTAAATCCATTCACTGACGTGAATGTATTTCCGTGAAAACTGCAGGCTCGT
AACGCTGAATCCCAGCACCC

Downstream 100 bases:

>100_bases
TGTAATCTGGAAGGTGGGCGTGAAGCAAGACGTGATGCGGCATCGCCATAGCCAAGTATGGAGACAAGCGCGACCCTCCA
GCGTATCAACTGAGACTCGC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: Mx65-RT; Reverse transcriptase [H]

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MPESEDLLALLNICEIESSNTPVLFSVLGSPDKFYRSFKIPKRNGGFRVIDSPYPSLEIIQRSILRNVLSNFPAHPNAYA
FIKGRNAITHASHHLACRELITLDIKDFFPSITRQMVIDALIENGLANGVANYISLLCCLNGTLPQGACTSPALSNLVFE
RIDERLSRLAKTLKLKYSRYADDLAFSGDAIPRDMPQLIERILESRDLKLNKEKIRLKIAGAKKIITGVSISSGTLKAPR
EFKRLLRTQIYELEKNIDDISQMRSFDPLVYERVLGRLNYLLQIEPKNAFALQKKASLSQHHQRFLALSSGQWPALFPDA
DLAA

Sequences:

>Translated_324_residues
MPESEDLLALLNICEIESSNTPVLFSVLGSPDKFYRSFKIPKRNGGFRVIDSPYPSLEIIQRSILRNVLSNFPAHPNAYA
FIKGRNAITHASHHLACRELITLDIKDFFPSITRQMVIDALIENGLANGVANYISLLCCLNGTLPQGACTSPALSNLVFE
RIDERLSRLAKTLKLKYSRYADDLAFSGDAIPRDMPQLIERILESRDLKLNKEKIRLKIAGAKKIITGVSISSGTLKAPR
EFKRLLRTQIYELEKNIDDISQMRSFDPLVYERVLGRLNYLLQIEPKNAFALQKKASLSQHHQRFLALSSGQWPALFPDA
DLAA
>Mature_323_residues
PESEDLLALLNICEIESSNTPVLFSVLGSPDKFYRSFKIPKRNGGFRVIDSPYPSLEIIQRSILRNVLSNFPAHPNAYAF
IKGRNAITHASHHLACRELITLDIKDFFPSITRQMVIDALIENGLANGVANYISLLCCLNGTLPQGACTSPALSNLVFER
IDERLSRLAKTLKLKYSRYADDLAFSGDAIPRDMPQLIERILESRDLKLNKEKIRLKIAGAKKIITGVSISSGTLKAPRE
FKRLLRTQIYELEKNIDDISQMRSFDPLVYERVLGRLNYLLQIEPKNAFALQKKASLSQHHQRFLALSSGQWPALFPDAD
LAA

Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000123
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: =2.7.7.49 [H]

Molecular weight: Translated: 36454; Mature: 36323

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPESEDLLALLNICEIESSNTPVLFSVLGSPDKFYRSFKIPKRNGGFRVIDSPYPSLEII
CCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEECCCCCHHHHH
QRSILRNVLSNFPAHPNAYAFIKGRNAITHASHHLACRELITLDIKDFFPSITRQMVIDA
HHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIENGLANGVANYISLLCCLNGTLPQGACTSPALSNLVFERIDERLSRLAKTLKLKYSRY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADDLAFSGDAIPRDMPQLIERILESRDLKLNKEKIRLKIAGAKKIITGVSISSGTLKAPR
HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHEEEEEECCHHHHEECCCCCCCCCCCH
EFKRLLRTQIYELEKNIDDISQMRSFDPLVYERVLGRLNYLLQIEPKNAFALQKKASLSQ
HHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHH
HHQRFLALSSGQWPALFPDADLAA
HHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PESEDLLALLNICEIESSNTPVLFSVLGSPDKFYRSFKIPKRNGGFRVIDSPYPSLEII
CCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEECCCCCHHHHH
QRSILRNVLSNFPAHPNAYAFIKGRNAITHASHHLACRELITLDIKDFFPSITRQMVIDA
HHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIENGLANGVANYISLLCCLNGTLPQGACTSPALSNLVFERIDERLSRLAKTLKLKYSRY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADDLAFSGDAIPRDMPQLIERILESRDLKLNKEKIRLKIAGAKKIITGVSISSGTLKAPR
HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHEEEEEECCHHHHEECCCCCCCCCCCH
EFKRLLRTQIYELEKNIDDISQMRSFDPLVYERVLGRLNYLLQIEPKNAFALQKKASLSQ
HHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHH
HHQRFLALSSGQWPALFPDADLAA
HHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1689062 [H]