Click here to switch to the map view.

The map label for this gene is ywbI [H]

Identifier: 73539659

GI number: 73539659

Start: 2671701

End: 2672636

Strand: Reverse

Name: ywbI [H]

Synonym: Reut_B5839

Alternate gene names: 73539659

Gene position: 2672636-2671701 (Counterclockwise)

Preceding gene: 73539661

Following gene: 73539658

Centisome position: 98.04

GC content: 64.0

Gene sequence:

>936_bases
ATGGCAAAGGCTCGCGAGACGCCCGAACGTCTGGCCAAGGAAATCACATTGCGGCAGTTCCGCTACTTCGTTGCCGCGGC
GGAAACGGGCCAATTCTCGATGGCCGCGACGGCCGAACATGTGTCGCAATCAGCCATCACCAATGCGGTACTGACGCTGG
AACAGCGCCTCGCGGTACGCCTGTTCGACCGCCTGCCCCACGGCGTAGCACTGACGGCCGAGGGCCACCTGTTCCACCAG
CACGCGCGGCAGATCCTTGATTCGGTCGAGGACGCGCTGCGCGAGCCGCGGTTTCAGGTACACGGGTTGAAGGGCAGCGT
ACGGCTGGCCGCGTCGTACACCGTGCTCGGCTACTTCCTGCCGGGGCTGCTGGCGCGCTTTCGCACGAACTACCCCGATA
TCGAACTCGACCTGCTGGACATGGATCGCCCCGAGATTGAAAAAGCCGTGTTGTCCGGCGACATCGAGCTCGGCATCGCG
CTGCTGTCCAACCTGGAACGGCCGCAGCGCTTTTCACGTCACACGCTGGTCCGTTCGCGGCGGCAGCTATGGACATCGGC
CACGCACCCGCTGCTCGCTATCGACCGCCCTTCACTGCGCGATATCGCGGCTCATCCGTACATCCTCATCACCGTGGATG
AGGCGGAAACGTCGACCATGCGCTACTGGCGCAGCCGCAAGCTCGCGCCGAATGTTGCGTTCCGCACCAGTTCGATGGAA
GCGTTGCGCGGGCTGGTCGCGCATGGCTTCGGTGTCACAGTGCTGTCCGATATCGTGTACCGGCCCTGGTCGCTGGAGGG
TAAGGAGATTGCCGCACGGCCGATTGCGGATGCAGTGCCGGACATGGAGGTCGGGATGCTGTGGCAGCCCGGGCGCAAGC
TGGAGAAACCGGCGGATGCGCTGCGGGAGTTTTTGATTCATGCGTGTGGGAGCTGA

Upstream 100 bases:

>100_bases
TATCGGGCTTATCGGGGCAGTGTAGAAAGCACCGCGGCTATCGTAAAATCATGAAATACGAGAGCTGATATCTGACAAAC
GAATACCGGAGAGCACGACC

Downstream 100 bases:

>100_bases
CGAGGTGACGCCTCCTCCCTTTGGCTAAGCTCAACCTTTGGTCTCATACCGCACCAAGAGCCTAAGCCCTTCAGCCAATG
TTCGTCCACGTACAGAACGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MAKARETPERLAKEITLRQFRYFVAAAETGQFSMAATAEHVSQSAITNAVLTLEQRLAVRLFDRLPHGVALTAEGHLFHQ
HARQILDSVEDALREPRFQVHGLKGSVRLAASYTVLGYFLPGLLARFRTNYPDIELDLLDMDRPEIEKAVLSGDIELGIA
LLSNLERPQRFSRHTLVRSRRQLWTSATHPLLAIDRPSLRDIAAHPYILITVDEAETSTMRYWRSRKLAPNVAFRTSSME
ALRGLVAHGFGVTVLSDIVYRPWSLEGKEIAARPIADAVPDMEVGMLWQPGRKLEKPADALREFLIHACGS

Sequences:

>Translated_311_residues
MAKARETPERLAKEITLRQFRYFVAAAETGQFSMAATAEHVSQSAITNAVLTLEQRLAVRLFDRLPHGVALTAEGHLFHQ
HARQILDSVEDALREPRFQVHGLKGSVRLAASYTVLGYFLPGLLARFRTNYPDIELDLLDMDRPEIEKAVLSGDIELGIA
LLSNLERPQRFSRHTLVRSRRQLWTSATHPLLAIDRPSLRDIAAHPYILITVDEAETSTMRYWRSRKLAPNVAFRTSSME
ALRGLVAHGFGVTVLSDIVYRPWSLEGKEIAARPIADAVPDMEVGMLWQPGRKLEKPADALREFLIHACGS
>Mature_310_residues
AKARETPERLAKEITLRQFRYFVAAAETGQFSMAATAEHVSQSAITNAVLTLEQRLAVRLFDRLPHGVALTAEGHLFHQH
ARQILDSVEDALREPRFQVHGLKGSVRLAASYTVLGYFLPGLLARFRTNYPDIELDLLDMDRPEIEKAVLSGDIELGIAL
LSNLERPQRFSRHTLVRSRRQLWTSATHPLLAIDRPSLRDIAAHPYILITVDEAETSTMRYWRSRKLAPNVAFRTSSMEA
LRGLVAHGFGVTVLSDIVYRPWSLEGKEIAARPIADAVPDMEVGMLWQPGRKLEKPADALREFLIHACGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=307, Percent_Identity=28.3387622149837, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI157672245, Length=230, Percent_Identity=29.5652173913043, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=26.7796610169492, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788887, Length=303, Percent_Identity=26.7326732673267, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790399, Length=293, Percent_Identity=24.5733788395904, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788748, Length=146, Percent_Identity=32.8767123287671, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87081904, Length=183, Percent_Identity=30.6010928961749, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI145693105, Length=145, Percent_Identity=29.6551724137931, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=272, Percent_Identity=21.6911764705882, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082132, Length=250, Percent_Identity=25.2, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787949, Length=270, Percent_Identity=24.0740740740741, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786401, Length=249, Percent_Identity=26.5060240963855, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787530, Length=257, Percent_Identity=25.2918287937743, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788626, Length=294, Percent_Identity=26.530612244898, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1789440, Length=273, Percent_Identity=24.9084249084249, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790208, Length=254, Percent_Identity=25.5905511811024, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787128, Length=128, Percent_Identity=32.03125, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788297, Length=253, Percent_Identity=24.901185770751, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790262, Length=258, Percent_Identity=23.2558139534884, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34951; Mature: 34819

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKARETPERLAKEITLRQFRYFVAAAETGQFSMAATAEHVSQSAITNAVLTLEQRLAVR
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFDRLPHGVALTAEGHLFHQHARQILDSVEDALREPRFQVHGLKGSVRLAASYTVLGYFL
HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEHHHHHHHHHHH
PGLLARFRTNYPDIELDLLDMDRPEIEKAVLSGDIELGIALLSNLERPQRFSRHTLVRSR
HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHH
RQLWTSATHPLLAIDRPSLRDIAAHPYILITVDEAETSTMRYWRSRKLAPNVAFRTSSME
HHHHHHCCCCEEEECCCCHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCHHH
ALRGLVAHGFGVTVLSDIVYRPWSLEGKEIAARPIADAVPDMEVGMLWQPGRKLEKPADA
HHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHCCHHHHCCCCCCCEEECCCCCCCCHHHH
LREFLIHACGS
HHHHHHHHCCC
>Mature Secondary Structure 
AKARETPERLAKEITLRQFRYFVAAAETGQFSMAATAEHVSQSAITNAVLTLEQRLAVR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFDRLPHGVALTAEGHLFHQHARQILDSVEDALREPRFQVHGLKGSVRLAASYTVLGYFL
HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEHHHHHHHHHHH
PGLLARFRTNYPDIELDLLDMDRPEIEKAVLSGDIELGIALLSNLERPQRFSRHTLVRSR
HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHH
RQLWTSATHPLLAIDRPSLRDIAAHPYILITVDEAETSTMRYWRSRKLAPNVAFRTSSME
HHHHHHCCCCEEEECCCCHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCHHH
ALRGLVAHGFGVTVLSDIVYRPWSLEGKEIAARPIADAVPDMEVGMLWQPGRKLEKPADA
HHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHCCHHHHCCCCCCCEEECCCCCCCCHHHH
LREFLIHACGS
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]