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The map label for this gene is ydhC [H]

Identifier: 73539618

GI number: 73539618

Start: 2621587

End: 2622291

Strand: Direct

Name: ydhC [H]

Synonym: Reut_B5798

Alternate gene names: 73539618

Gene position: 2621587-2622291 (Clockwise)

Preceding gene: 73539617

Following gene: 73539619

Centisome position: 96.16

GC content: 62.41

Gene sequence:

>705_bases
ATGATTGCAGGCGTCCCGTCTGTCCATCCGCTGCCGAACATGAACCATGTAGAAGTCAAGGGCGTAGATCTTCCGGCCCA
GATCGCCCAACAGGTCCGCAAGCTGATCAATCGCGGCACCCTTGCCCCGGGGCTCCAGTTGCGCCAGTCAGACCTGGCCG
ATCGCTTCGGCATCAGCCGGGTGCCGGTGCGAGAGGCGCTCAAGCTGCTGGCGGCCGAGGGCATCATTGAACATGATCCT
AACCGCGGCTTTTTCGTTGCTCCGCTTTCGACAGACGAAGCCCGCCAGCTCTACCGCTACCGGTTCCTGCTGGAGCGGGA
GTTGCTGAAGACCGTCGAATGGCCGGACAGCACGCAGATGAAGGCACTGAAGGCGATGCTGGAACGGCTCGACAGCTACC
TCGATAGCGGCCAACGCGCAGAGTGGATCGACGAATACCAGGATTTCTATGCACTGCTGTTTGACCTGTCACCGGACAAG
ATCCTGCGGCGCGAGGCGATTCGCCTGATCAGGCTGACCGACCGCTACCGGGCACTGGCCTCGGAGGTGAGGGTACCGGG
CGAACAACGGACCGCGCACCTGGAACATACGCTGTTGGCCGCCATGTCGAAACGGGACCGTGCGCAACTCATCCGCGGTT
TCGAACGCGAGCGCGAGAAGATTCTGGCGTCGATGCTGGCGAGGATCGACGCGCGCGGGCTGTAG

Upstream 100 bases:

>100_bases
CCTGCGGCGTGGTGTTGTTGTTGGCATCGGCGCTGTACATGACGAACGTCGCCGCCATGCGCGAGCAGGTTCAACCGGTG
TACAGTCGCATGAACCTGTC

Downstream 100 bases:

>100_bases
CTCGCCTGAGAACCCGCGTGATGCCGCGCGGGTAGACCGCGGTTCTCGAACAGGAAGCTGTCGTAGTACGGCTCGAAGGC
CGCAGCACCAGGTTGCCGAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MIAGVPSVHPLPNMNHVEVKGVDLPAQIAQQVRKLINRGTLAPGLQLRQSDLADRFGISRVPVREALKLLAAEGIIEHDP
NRGFFVAPLSTDEARQLYRYRFLLERELLKTVEWPDSTQMKALKAMLERLDSYLDSGQRAEWIDEYQDFYALLFDLSPDK
ILRREAIRLIRLTDRYRALASEVRVPGEQRTAHLEHTLLAAMSKRDRAQLIRGFEREREKILASMLARIDARGL

Sequences:

>Translated_234_residues
MIAGVPSVHPLPNMNHVEVKGVDLPAQIAQQVRKLINRGTLAPGLQLRQSDLADRFGISRVPVREALKLLAAEGIIEHDP
NRGFFVAPLSTDEARQLYRYRFLLERELLKTVEWPDSTQMKALKAMLERLDSYLDSGQRAEWIDEYQDFYALLFDLSPDK
ILRREAIRLIRLTDRYRALASEVRVPGEQRTAHLEHTLLAAMSKRDRAQLIRGFEREREKILASMLARIDARGL
>Mature_234_residues
MIAGVPSVHPLPNMNHVEVKGVDLPAQIAQQVRKLINRGTLAPGLQLRQSDLADRFGISRVPVREALKLLAAEGIIEHDP
NRGFFVAPLSTDEARQLYRYRFLLERELLKTVEWPDSTQMKALKAMLERLDSYLDSGQRAEWIDEYQDFYALLFDLSPDK
ILRREAIRLIRLTDRYRALASEVRVPGEQRTAHLEHTLLAAMSKRDRAQLIRGFEREREKILASMLARIDARGL

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26892; Mature: 26892

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAGVPSVHPLPNMNHVEVKGVDLPAQIAQQVRKLINRGTLAPGLQLRQSDLADRFGISR
CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
VPVREALKLLAAEGIIEHDPNRGFFVAPLSTDEARQLYRYRFLLERELLKTVEWPDSTQM
CCHHHHHHHHHHHCHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
KALKAMLERLDSYLDSGQRAEWIDEYQDFYALLFDLSPDKILRREAIRLIRLTDRYRALA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
SEVRVPGEQRTAHLEHTLLAAMSKRDRAQLIRGFEREREKILASMLARIDARGL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIAGVPSVHPLPNMNHVEVKGVDLPAQIAQQVRKLINRGTLAPGLQLRQSDLADRFGISR
CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
VPVREALKLLAAEGIIEHDPNRGFFVAPLSTDEARQLYRYRFLLERELLKTVEWPDSTQM
CCHHHHHHHHHHHCHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
KALKAMLERLDSYLDSGQRAEWIDEYQDFYALLFDLSPDKILRREAIRLIRLTDRYRALA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
SEVRVPGEQRTAHLEHTLLAAMSKRDRAQLIRGFEREREKILASMLARIDARGL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]