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The map label for this gene is virS [H]

Identifier: 73538877

GI number: 73538877

Start: 1789948

End: 1790949

Strand: Direct

Name: virS [H]

Synonym: Reut_B5052

Alternate gene names: 73538877

Gene position: 1789948-1790949 (Clockwise)

Preceding gene: 73538876

Following gene: 73538878

Centisome position: 65.66

GC content: 65.37

Gene sequence:

>1002_bases
ATGAGCACCCTGATTCGCAGCGCCCTACTTGTCAAGTTCTCCGAGATCGCACGCACGCTCAGCGTCGACCCGGAGCGCAT
GATCCGTCATGTCGGGGCGGACCGCTCATGCATCGTTTCACCGGACCTCCATGTCCCCGAGCCGTGGCTGGCGAATGTGC
TCGATGCCTCCGAGCAGGCGTCCAGCGGCGCGGCGGTCGGATTGCTGATGGCCGAGTCGTGGCGCCTGTCCGATTTCGGC
CCGATCAGCCTGCTGCTGCAGCACCAGCCGACTTTGCGCCACGCGCTCGGCCAGCTCGAGACGTACCGCCACCTGCTGAG
CGAGTCCGTGCTCGTCCATGTCGAGGAAACCGATGCTGTCGCCATCGTCCGGCTGCAGTTGATCACCGACCGCCCGACCC
CCGGGCGCCAGCCGGTCGAGCTTTCGATCGGCGCGATGCTTTGCCTGATGAAATCGATGCTCGGCGGAAAGTGGAAGCCG
CGCAGCGTGCATTTCACGCATGGCGCGCCCGCGAACCTGCACGTGCATCGCCGGCTGTTCGGCACGAATGTGGAGTTCGG
CAGCGACTTCGATGGCATCGTGCTGGACCGGCAGGATCTCGATCGTCCCAATCCGCTTGGCGATGTGAATCTCGCCCGCT
ACGCCAGGGAATTTCTCGACCAGCACCCGCGCGGGCGCAGGATTTCCACGGCGTCCAACGTACGCCGTTCGGTCCATATG
CTGCTGCCGCGCGGACAAGGCAGCATCGAGCAGGTCGGCCAGCAGCTCGGCATGAGCGCGCGGACCCTGCAACGCCGGCT
CGGACAAGAAGGGCAAGAGTTCTCTTCGCTCGTAAACGAGGTCCGGCGCGGGCTGGCAAGCCGCTACCTCGCGGATCTCC
GCTATCCTGTCTCCCAGGTGGCGATGCTGGTTGGCTTCGCGGAAGTCAGCACCTTTTCGCGCTGGTTCAGCTCGCAATTC
GGCATGCCGCCGACACGCTGGCGCACCGGCGCGGAACACTGA

Upstream 100 bases:

>100_bases
CAAGGTTGACACGCCACGGGCGCCTGAATACCTTGAGTGACGGCACCGCGGCGTCGCAACGGCGCGCCGCAAGCCACGGA
TTCGTCCCCTGAGCCATCAC

Downstream 100 bases:

>100_bases
TCGCGCCACCCGTCCCGCTACATCCCTTGTTTGCGCCGTCGGCCTGACGGCGCCCCTGCTCCCGCTTTGCTTTCCGGCGC
CCGCGTGCGCCAGCGCTTCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSTLIRSALLVKFSEIARTLSVDPERMIRHVGADRSCIVSPDLHVPEPWLANVLDASEQASSGAAVGLLMAESWRLSDFG
PISLLLQHQPTLRHALGQLETYRHLLSESVLVHVEETDAVAIVRLQLITDRPTPGRQPVELSIGAMLCLMKSMLGGKWKP
RSVHFTHGAPANLHVHRRLFGTNVEFGSDFDGIVLDRQDLDRPNPLGDVNLARYAREFLDQHPRGRRISTASNVRRSVHM
LLPRGQGSIEQVGQQLGMSARTLQRRLGQEGQEFSSLVNEVRRGLASRYLADLRYPVSQVAMLVGFAEVSTFSRWFSSQF
GMPPTRWRTGAEH

Sequences:

>Translated_333_residues
MSTLIRSALLVKFSEIARTLSVDPERMIRHVGADRSCIVSPDLHVPEPWLANVLDASEQASSGAAVGLLMAESWRLSDFG
PISLLLQHQPTLRHALGQLETYRHLLSESVLVHVEETDAVAIVRLQLITDRPTPGRQPVELSIGAMLCLMKSMLGGKWKP
RSVHFTHGAPANLHVHRRLFGTNVEFGSDFDGIVLDRQDLDRPNPLGDVNLARYAREFLDQHPRGRRISTASNVRRSVHM
LLPRGQGSIEQVGQQLGMSARTLQRRLGQEGQEFSSLVNEVRRGLASRYLADLRYPVSQVAMLVGFAEVSTFSRWFSSQF
GMPPTRWRTGAEH
>Mature_332_residues
STLIRSALLVKFSEIARTLSVDPERMIRHVGADRSCIVSPDLHVPEPWLANVLDASEQASSGAAVGLLMAESWRLSDFGP
ISLLLQHQPTLRHALGQLETYRHLLSESVLVHVEETDAVAIVRLQLITDRPTPGRQPVELSIGAMLCLMKSMLGGKWKPR
SVHFTHGAPANLHVHRRLFGTNVEFGSDFDGIVLDRQDLDRPNPLGDVNLARYAREFLDQHPRGRRISTASNVRRSVHML
LPRGQGSIEQVGQQLGMSARTLQRRLGQEGQEFSSLVNEVRRGLASRYLADLRYPVSQVAMLVGFAEVSTFSRWFSSQFG
MPPTRWRTGAEH

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37189; Mature: 37058

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLIRSALLVKFSEIARTLSVDPERMIRHVGADRSCIVSPDLHVPEPWLANVLDASEQA
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHC
SSGAAVGLLMAESWRLSDFGPISLLLQHQPTLRHALGQLETYRHLLSESVLVHVEETDAV
CCCCEEEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCE
AIVRLQLITDRPTPGRQPVELSIGAMLCLMKSMLGGKWKPRSVHFTHGAPANLHVHRRLF
EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEHHHHH
GTNVEFGSDFDGIVLDRQDLDRPNPLGDVNLARYAREFLDQHPRGRRISTASNVRRSVHM
CCCCCCCCCCCCEEECHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
LLPRGQGSIEQVGQQLGMSARTLQRRLGQEGQEFSSLVNEVRRGLASRYLADLRYPVSQV
HCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AMLVGFAEVSTFSRWFSSQFGMPPTRWRTGAEH
HHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC
>Mature Secondary Structure 
STLIRSALLVKFSEIARTLSVDPERMIRHVGADRSCIVSPDLHVPEPWLANVLDASEQA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHC
SSGAAVGLLMAESWRLSDFGPISLLLQHQPTLRHALGQLETYRHLLSESVLVHVEETDAV
CCCCEEEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCE
AIVRLQLITDRPTPGRQPVELSIGAMLCLMKSMLGGKWKPRSVHFTHGAPANLHVHRRLF
EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEHHHHH
GTNVEFGSDFDGIVLDRQDLDRPNPLGDVNLARYAREFLDQHPRGRRISTASNVRRSVHM
CCCCCCCCCCCCEEECHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
LLPRGQGSIEQVGQQLGMSARTLQRRLGQEGQEFSSLVNEVRRGLASRYLADLRYPVSQV
HCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AMLVGFAEVSTFSRWFSSQFGMPPTRWRTGAEH
HHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]