Click here to switch to the map view.

The map label for this gene is pqqE [H]

Identifier: 73538842

GI number: 73538842

Start: 1748541

End: 1749704

Strand: Direct

Name: pqqE [H]

Synonym: Reut_B5017

Alternate gene names: 73538842

Gene position: 1748541-1749704 (Clockwise)

Preceding gene: 73538841

Following gene: 73538843

Centisome position: 64.14

GC content: 68.04

Gene sequence:

>1164_bases
ATGTTCCGCCTGTCCCGATTCATGGAAGCGCTGCGCGATGGCGGTCCCGTGCCCGCGCCGCGCAAGCCGGCCGGCCCGGT
CGTCATCTGGAACTTGATCCGGCGCTGCAACCTCAACTGCAAGCATTGCTATTCGACCTCCGCCGACACCAACTTCAAGG
GCGAACTGACTACGGCTGAAGCGCTGGATGTGCTCGGGCAGCTCAAGGCAGCGCATGCCCCCGCGCTGATCCTGTCCGGC
GGCGAGCCGCTGCTGCGCGAGGATCTGTACACGATTGCAGCGCGCGCGCGAGAGATGGGCTTCCACTTGTCGCTGTCGTC
GAACGGCACATTGCTGGATGCCGCGCACGCCGCGCGGCTAGCCGAGAGCGGCTTCGACTATGTCGGCGTCAGCCTCGACG
GCATGCAGGACACACACGACCGCTTCCGCCGCAGCGGCGATGCTTTCCGCCATGCGCTCGCCGGCCTGCGCGCGGCGCGC
AGCGCTGGCCTGCGGGTAGGCGTGCGCATGACGCTGACCGAAGAGAACGCGAACGAACTGCCGGCGGTGGTGGCCTTTAC
CGAAGCGGAAGGCATCGACAAGTTCTACCTGTCGCACTTCAACTACGCGGGGCGCGGCCGCAGCCACCGTGGCGACGACG
CGCGTCACGCGGCCACGCGCGCCGCGCTTGACTGGCTGTTTGACCACGTCTGGGAGCGCGCGCGCCAGGGCCATGCCGGG
GACTTCGTCACCGGCAATAACGATGCAGACGGCGTCTACCTGCTGCACTGGATCGCGCGGCACCAGCCGCACCGGCTGGC
CGACATGCGCCGGCGGCTTGTGAACTGGGGCGGCAATGCGACCGGCGTTGGCGTGGCCAATATCGACAACCTCGGCAACG
TCCACCCCGACACGATGTGGTGGCACGTCACGCTCGGTAATGTGCGCGAGCGCGCGTTCGGCGATATCTGGGCCGACCGC
AGCGATCCGCTCATGGCAGGCCTGGCGGCATCGCCGCGTCCGCTGCAAGGGCGCTGCGCGAACTGCGCGCAGGTGGATAT
CTGCAACGGCAATACGCGTGTGCGCGCGGCCGCGGTGACCGGCAATCCATGGGCGCAAGACCCCGGCTGCTACCTGACCG
ACGAGGAACTTGCCATGCAGCTCGGTGCGGAGGTCGCCGCATGA

Upstream 100 bases:

>100_bases
GGTGACGCCTGCCGCGCGCACGACGTGTTGTGGTCCACGCGCATCCTCAAGAAGACCGGCCTGCGCCTGCCACCGGCCCG
TACCGAGTAAGGGAGTCATC

Downstream 100 bases:

>100_bases
ACCGCTTCCTGCAATGGCTGGCGGCGTGCGTGCTCGCAGGCCTGTGCCAGACGGCGGCCATAGGCGGGCAAGCGGCCACC
GTCGACGCCGCCGCGCTATA

Product: radical SAM family protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MFRLSRFMEALRDGGPVPAPRKPAGPVVIWNLIRRCNLNCKHCYSTSADTNFKGELTTAEALDVLGQLKAAHAPALILSG
GEPLLREDLYTIAARAREMGFHLSLSSNGTLLDAAHAARLAESGFDYVGVSLDGMQDTHDRFRRSGDAFRHALAGLRAAR
SAGLRVGVRMTLTEENANELPAVVAFTEAEGIDKFYLSHFNYAGRGRSHRGDDARHAATRAALDWLFDHVWERARQGHAG
DFVTGNNDADGVYLLHWIARHQPHRLADMRRRLVNWGGNATGVGVANIDNLGNVHPDTMWWHVTLGNVRERAFGDIWADR
SDPLMAGLAASPRPLQGRCANCAQVDICNGNTRVRAAAVTGNPWAQDPGCYLTDEELAMQLGAEVAA

Sequences:

>Translated_387_residues
MFRLSRFMEALRDGGPVPAPRKPAGPVVIWNLIRRCNLNCKHCYSTSADTNFKGELTTAEALDVLGQLKAAHAPALILSG
GEPLLREDLYTIAARAREMGFHLSLSSNGTLLDAAHAARLAESGFDYVGVSLDGMQDTHDRFRRSGDAFRHALAGLRAAR
SAGLRVGVRMTLTEENANELPAVVAFTEAEGIDKFYLSHFNYAGRGRSHRGDDARHAATRAALDWLFDHVWERARQGHAG
DFVTGNNDADGVYLLHWIARHQPHRLADMRRRLVNWGGNATGVGVANIDNLGNVHPDTMWWHVTLGNVRERAFGDIWADR
SDPLMAGLAASPRPLQGRCANCAQVDICNGNTRVRAAAVTGNPWAQDPGCYLTDEELAMQLGAEVAA
>Mature_387_residues
MFRLSRFMEALRDGGPVPAPRKPAGPVVIWNLIRRCNLNCKHCYSTSADTNFKGELTTAEALDVLGQLKAAHAPALILSG
GEPLLREDLYTIAARAREMGFHLSLSSNGTLLDAAHAARLAESGFDYVGVSLDGMQDTHDRFRRSGDAFRHALAGLRAAR
SAGLRVGVRMTLTEENANELPAVVAFTEAEGIDKFYLSHFNYAGRGRSHRGDDARHAATRAALDWLFDHVWERARQGHAG
DFVTGNNDADGVYLLHWIARHQPHRLADMRRRLVNWGGNATGVGVANIDNLGNVHPDTMWWHVTLGNVRERAFGDIWADR
SDPLMAGLAASPRPLQGRCANCAQVDICNGNTRVRAAAVTGNPWAQDPGCYLTDEELAMQLGAEVAA

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 42262; Mature: 42262

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRLSRFMEALRDGGPVPAPRKPAGPVVIWNLIRRCNLNCKHCYSTSADTNFKGELTTAE
CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHH
ALDVLGQLKAAHAPALILSGGEPLLREDLYTIAARAREMGFHLSLSSNGTLLDAAHAARL
HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEEECCCCCEEHHHHHHHH
AESGFDYVGVSLDGMQDTHDRFRRSGDAFRHALAGLRAARSAGLRVGVRMTLTEENANEL
HHCCCCEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC
PAVVAFTEAEGIDKFYLSHFNYAGRGRSHRGDDARHAATRAALDWLFDHVWERARQGHAG
CEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DFVTGNNDADGVYLLHWIARHQPHRLADMRRRLVNWGGNATGVGVANIDNLGNVHPDTMW
CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCEE
WHVTLGNVRERAFGDIWADRSDPLMAGLAASPRPLQGRCANCAQVDICNGNTRVRAAAVT
EEEEECCHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEE
GNPWAQDPGCYLTDEELAMQLGAEVAA
CCCCCCCCCCEECHHHHHHHHHHHHCC
>Mature Secondary Structure
MFRLSRFMEALRDGGPVPAPRKPAGPVVIWNLIRRCNLNCKHCYSTSADTNFKGELTTAE
CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHH
ALDVLGQLKAAHAPALILSGGEPLLREDLYTIAARAREMGFHLSLSSNGTLLDAAHAARL
HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEEECCCCCEEHHHHHHHH
AESGFDYVGVSLDGMQDTHDRFRRSGDAFRHALAGLRAARSAGLRVGVRMTLTEENANEL
HHCCCCEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC
PAVVAFTEAEGIDKFYLSHFNYAGRGRSHRGDDARHAATRAALDWLFDHVWERARQGHAG
CEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DFVTGNNDADGVYLLHWIARHQPHRLADMRRRLVNWGGNATGVGVANIDNLGNVHPDTMW
CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCEE
WHVTLGNVRERAFGDIWADRSDPLMAGLAASPRPLQGRCANCAQVDICNGNTRVRAAAVT
EEEEECCHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEE
GNPWAQDPGCYLTDEELAMQLGAEVAA
CCCCCCCCCCEECHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11111029 [H]