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The map label for this gene is nirF [H]

Identifier: 73538838

GI number: 73538838

Start: 1745335

End: 1746576

Strand: Direct

Name: nirF [H]

Synonym: Reut_B5013

Alternate gene names: 73538838

Gene position: 1745335-1746576 (Clockwise)

Preceding gene: 73538837

Following gene: 73538839

Centisome position: 64.02

GC content: 68.52

Gene sequence:

>1242_bases
ATGGCTGATCGAACGATTGCAGGCCGGCCAGGCACCAGCCGTTCCGGGCAGGTAGCCCGGATCAGACGGCAGGCACTGAA
GTGTCTGTTGCCCATTCTCCTGACCGGTGCGTTGCTCGCCGGTTGCGCAACGCCGGTGCGCGGCACTGGCGATCTCGGCG
TCATCATCGAACGCGCCGCGGGCCGCATGCAGGTCGTGGAGACCACTGGCATGACGCAGCTTGCGACGGTCGACGGCCTG
GGCGATCTGTCGCACGCGAGCGTGGTGTTCTCGCGCGATGGCCGCTTTGCCTACGTCTTCGGGCGCGACGGCGGATTGTC
GCGCGTGGACCTTCTGCAAGCGCGCGTCACGCATCGCGTGATGCAGGCTGGCAACAGCATCGGCGGCGCCATTACGCAAG
ATGGCCGCGTGGTAGCGGCACAGAACTATGCGCCGGGGGGCATCAAGCTGTTCGATGCGGCGACGCTGGAACCCCTGGCA
GACATTCCCGCCATTGGCATGGACGGCAAGCGCTCCAAGGTCGTCGGCCTGGCCGACCTGCCGGGCCGGAGGCTCGCCGC
CAGCCTGTTCGAATCGGGCGAGATCTGGATCATCGACATCCACCACCCGCGCGAGCCGCAGGTCACGCGGCTGCACGCCG
GACGCGACCCGTACGACGGGCTCGTCACGCCGGATGGCCGCTGGTACATCGCGGGCCTATTTGGCCAGGACGGGCTGGCG
CTGGTGGACCTGTGGCAGTCTCCGCCCGAGGCGCGGCGCATCCTGTCCGGCTATGGCCGCGGCACCGATCCACTGCCCGT
CTACAAGATGCCGCACCTGCGCGGCTGGGGCATGGCACAGGGCATGGCATGGTTGCCCGCGATCGGACGGCACGAGGTGC
TCGTCGCCGACGCTGCGCAAGGCTGGAAGGAATCCGCACGCGTTGCGCTGGCCGGCCAGCCGGTGTTTGTCATGGCGCGC
CCGGATGGCCGGCAGGTCTGGGTCAACTTCGCCTTCCCGCACAACGACACGGTGCAGGTCATCGACACCGCGACGCGGCG
GGTCGTGCGGACCATGCGCCCGTGCCGCGGCGTGCTGCACATGGAATTCACGCCCAAGGGCGAAGCCGTGTGGCTGTCGT
GCCGCGACGACAACCGCGTGGAGGTCTACGACACAGCCACCTTCGCGCGGCTCGCCACGCTGCCGGTCGATAACCCGAGC
GGCATCTTCTTCACGGTGCGCGCCCAGCGCTTCGGCATGTAA

Upstream 100 bases:

>100_bases
CAGGCAAGCCGCGCGATGGCCTGGTGGCCACCGTGCTGCAGGGCCGCCCCGGCACCGCCATGCCACCATGGCAACCTTTC
ATGACGCAGGATGAAGCCCA

Downstream 100 bases:

>100_bases
CGATTGCAACCATGTACGACGAAGCCATGCTCTACGACCGGATCCAGCGCGACCTGCCGCTGCATCCGCGCCCATACCGC
CAACTGGCCGGTGAACTGGG

Product: cytochrome d1, heme region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MADRTIAGRPGTSRSGQVARIRRQALKCLLPILLTGALLAGCATPVRGTGDLGVIIERAAGRMQVVETTGMTQLATVDGL
GDLSHASVVFSRDGRFAYVFGRDGGLSRVDLLQARVTHRVMQAGNSIGGAITQDGRVVAAQNYAPGGIKLFDAATLEPLA
DIPAIGMDGKRSKVVGLADLPGRRLAASLFESGEIWIIDIHHPREPQVTRLHAGRDPYDGLVTPDGRWYIAGLFGQDGLA
LVDLWQSPPEARRILSGYGRGTDPLPVYKMPHLRGWGMAQGMAWLPAIGRHEVLVADAAQGWKESARVALAGQPVFVMAR
PDGRQVWVNFAFPHNDTVQVIDTATRRVVRTMRPCRGVLHMEFTPKGEAVWLSCRDDNRVEVYDTATFARLATLPVDNPS
GIFFTVRAQRFGM

Sequences:

>Translated_413_residues
MADRTIAGRPGTSRSGQVARIRRQALKCLLPILLTGALLAGCATPVRGTGDLGVIIERAAGRMQVVETTGMTQLATVDGL
GDLSHASVVFSRDGRFAYVFGRDGGLSRVDLLQARVTHRVMQAGNSIGGAITQDGRVVAAQNYAPGGIKLFDAATLEPLA
DIPAIGMDGKRSKVVGLADLPGRRLAASLFESGEIWIIDIHHPREPQVTRLHAGRDPYDGLVTPDGRWYIAGLFGQDGLA
LVDLWQSPPEARRILSGYGRGTDPLPVYKMPHLRGWGMAQGMAWLPAIGRHEVLVADAAQGWKESARVALAGQPVFVMAR
PDGRQVWVNFAFPHNDTVQVIDTATRRVVRTMRPCRGVLHMEFTPKGEAVWLSCRDDNRVEVYDTATFARLATLPVDNPS
GIFFTVRAQRFGM
>Mature_412_residues
ADRTIAGRPGTSRSGQVARIRRQALKCLLPILLTGALLAGCATPVRGTGDLGVIIERAAGRMQVVETTGMTQLATVDGLG
DLSHASVVFSRDGRFAYVFGRDGGLSRVDLLQARVTHRVMQAGNSIGGAITQDGRVVAAQNYAPGGIKLFDAATLEPLAD
IPAIGMDGKRSKVVGLADLPGRRLAASLFESGEIWIIDIHHPREPQVTRLHAGRDPYDGLVTPDGRWYIAGLFGQDGLAL
VDLWQSPPEARRILSGYGRGTDPLPVYKMPHLRGWGMAQGMAWLPAIGRHEVLVADAAQGWKESARVALAGQPVFVMARP
DGRQVWVNFAFPHNDTVQVIDTATRRVVRTMRPCRGVLHMEFTPKGEAVWLSCRDDNRVEVYDTATFARLATLPVDNPSG
IFFTVRAQRFGM

Specific function: Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR003143
- InterPro:   IPR015943 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44772; Mature: 44641

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRTIAGRPGTSRSGQVARIRRQALKCLLPILLTGALLAGCATPVRGTGDLGVIIERAA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
GRMQVVETTGMTQLATVDGLGDLSHASVVFSRDGRFAYVFGRDGGLSRVDLLQARVTHRV
CCEEEEEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHH
MQAGNSIGGAITQDGRVVAAQNYAPGGIKLFDAATLEPLADIPAIGMDGKRSKVVGLADL
HHCCCCCCCEEECCCEEEEECCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCEEEEEECC
PGRRLAASLFESGEIWIIDIHHPREPQVTRLHAGRDPYDGLVTPDGRWYIAGLFGQDGLA
CCHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCCCEECCCCCEEEEEEECCCCEE
LVDLWQSPPEARRILSGYGRGTDPLPVYKMPHLRGWGMAQGMAWLPAIGRHEVLVADAAQ
EEEECCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCEEEEECCCC
GWKESARVALAGQPVFVMARPDGRQVWVNFAFPHNDTVQVIDTATRRVVRTMRPCRGVLH
CHHHCCEEEEECCCEEEEECCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHCCEEE
MEFTPKGEAVWLSCRDDNRVEVYDTATFARLATLPVDNPSGIFFTVRAQRFGM
EEECCCCCEEEEEECCCCEEEEEECCEEEEEEEECCCCCCCEEEEEEEEECCC
>Mature Secondary Structure 
ADRTIAGRPGTSRSGQVARIRRQALKCLLPILLTGALLAGCATPVRGTGDLGVIIERAA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
GRMQVVETTGMTQLATVDGLGDLSHASVVFSRDGRFAYVFGRDGGLSRVDLLQARVTHRV
CCEEEEEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHH
MQAGNSIGGAITQDGRVVAAQNYAPGGIKLFDAATLEPLADIPAIGMDGKRSKVVGLADL
HHCCCCCCCEEECCCEEEEECCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCEEEEEECC
PGRRLAASLFESGEIWIIDIHHPREPQVTRLHAGRDPYDGLVTPDGRWYIAGLFGQDGLA
CCHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCCCEECCCCCEEEEEEECCCCEE
LVDLWQSPPEARRILSGYGRGTDPLPVYKMPHLRGWGMAQGMAWLPAIGRHEVLVADAAQ
EEEECCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCEEEEECCCC
GWKESARVALAGQPVFVMARPDGRQVWVNFAFPHNDTVQVIDTATRRVVRTMRPCRGVLH
CHHHCCEEEEECCCEEEEECCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHCCEEE
MEFTPKGEAVWLSCRDDNRVEVYDTATFARLATLPVDNPSGIFFTVRAQRFGM
EEECCCCCEEEEEECCCCEEEEEECCEEEEEEEECCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7588711; 2001732 [H]