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The map label for this gene is yfdE [H]

Identifier: 73538610

GI number: 73538610

Start: 1483456

End: 1484682

Strand: Reverse

Name: yfdE [H]

Synonym: Reut_B4785

Alternate gene names: 73538610

Gene position: 1484682-1483456 (Counterclockwise)

Preceding gene: 73538611

Following gene: 73538609

Centisome position: 54.46

GC content: 66.59

Gene sequence:

>1227_bases
ATGGCAGACATCAGACAAGACGCGCGCGACGCTGGCGCGCGCAAGGGGCCCCTGTCCCGCTTCACCATTCTTGATGCTTC
GCGTGTGCGCGCAGGCCCCACCGCGGTGAGGCTGTTCGCAGACATGGGCGCACGCGTGATCAAGCTCGAGATTCCGGCGG
GCGCACCGGGTGGCGACGACATGATCGGCGGACGCGACCATAACCGGGCGGACTACGAGAACCTGCACCGCAACAAGGAA
AGTCTCACGCTCAATATGAAGACGCCGGAGGGCGTGAAGATCCTCCACGAGCTGGTGAGCCGCGCCGATGTCTTTATCGA
GAACTACCGCCCTGACGTGAAGCACCGGCTCGGCATCGGCCCGGATGCGCTGCGCGCGATCAATCCGCGCTTGGTCTACG
CGAGCATATCCGGCTTCGGGCAGGACGGTCCCTACGCGGGCTGGCCCGGGTTTGACTCCATCGCGCAGGGCATGGGCGGC
CTGATGAGCGTGACCGGCAAGCCGGGCGAGGGCCCGATGCGCGTCGGCATTCCGCTTGCGGACCTGTGTGCCGGGCACTT
CTGCGCGATGGGCATCCTCACTGCATTGCTCGAGCGCGAAGCATCGGGCGAAGGGCAGTGGGTGCAAACGTCACTGCTCG
AAGCCCAGATCGCGATGCTCGACTTCCAGGCCGCGCAGTGGCTCGTGGACAAAAAGATCCCGGAGCAGACCGGCAACGAG
CATCCGCTGACCGTGCCTACGGGCGTGTTTGCAACGAGCGACGGCTACCTGAACATCGCCGCGATCGGCCAGACCATGTG
GAAGCGCCTGTGCGAGGCACTGGACGTGCCGCACCTTATTGACGAGCCTGGCATGGGTTCCGACCCTGAGCGCGTGCGCA
GTCGCGACAAGGTCAATGCCGCCATCGAAGCCGCGCTACGCACGCGCACCACCGCCGAGTGGACCGAACGGCTGCTCAAG
GCCGGCGTGCCGTGCGGGCCTATCCATCGTGTCGACCAGGTATTCGCCGACGCGCAGGTGAAGCACCTTGGTGTGGCCTG
GCCGATGCAGCACGCCGAGCTTGGCGATGTCGCGCTGGTCGGCCAGCCGATGCGCCTGTCGCGCTATCCGCGCGATCTGC
CGCCGCAGCCGGCGCCGGAGCAGGGCGCCAACACCGACGACATCCTGCGCGAGCTTGGCTATAGCGCCGGGCAGGTCGAA
GCACTGCGCGCCGCCTACATCGTTTGA

Upstream 100 bases:

>100_bases
AGTCGAGATCGGCCAGCGCGTCAGGGCGGTGTTCAAGCCAAGCGACGGCGGCCATGCGGTTCCGATGTTCACCCCGGCAT
GATGAACTGAGGCAACGACC

Downstream 100 bases:

>100_bases
ACGAAGGACATTCCCATGGCAAGACTCGTCGCCGCTTTTGGCTCTTCCCACAGCATCATGCTGGTTTGCCAGCGTGAAGA
CTGGCAACACGGCTTCCGCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MADIRQDARDAGARKGPLSRFTILDASRVRAGPTAVRLFADMGARVIKLEIPAGAPGGDDMIGGRDHNRADYENLHRNKE
SLTLNMKTPEGVKILHELVSRADVFIENYRPDVKHRLGIGPDALRAINPRLVYASISGFGQDGPYAGWPGFDSIAQGMGG
LMSVTGKPGEGPMRVGIPLADLCAGHFCAMGILTALLEREASGEGQWVQTSLLEAQIAMLDFQAAQWLVDKKIPEQTGNE
HPLTVPTGVFATSDGYLNIAAIGQTMWKRLCEALDVPHLIDEPGMGSDPERVRSRDKVNAAIEAALRTRTTAEWTERLLK
AGVPCGPIHRVDQVFADAQVKHLGVAWPMQHAELGDVALVGQPMRLSRYPRDLPPQPAPEQGANTDDILRELGYSAGQVE
ALRAAYIV

Sequences:

>Translated_408_residues
MADIRQDARDAGARKGPLSRFTILDASRVRAGPTAVRLFADMGARVIKLEIPAGAPGGDDMIGGRDHNRADYENLHRNKE
SLTLNMKTPEGVKILHELVSRADVFIENYRPDVKHRLGIGPDALRAINPRLVYASISGFGQDGPYAGWPGFDSIAQGMGG
LMSVTGKPGEGPMRVGIPLADLCAGHFCAMGILTALLEREASGEGQWVQTSLLEAQIAMLDFQAAQWLVDKKIPEQTGNE
HPLTVPTGVFATSDGYLNIAAIGQTMWKRLCEALDVPHLIDEPGMGSDPERVRSRDKVNAAIEAALRTRTTAEWTERLLK
AGVPCGPIHRVDQVFADAQVKHLGVAWPMQHAELGDVALVGQPMRLSRYPRDLPPQPAPEQGANTDDILRELGYSAGQVE
ALRAAYIV
>Mature_407_residues
ADIRQDARDAGARKGPLSRFTILDASRVRAGPTAVRLFADMGARVIKLEIPAGAPGGDDMIGGRDHNRADYENLHRNKES
LTLNMKTPEGVKILHELVSRADVFIENYRPDVKHRLGIGPDALRAINPRLVYASISGFGQDGPYAGWPGFDSIAQGMGGL
MSVTGKPGEGPMRVGIPLADLCAGHFCAMGILTALLEREASGEGQWVQTSLLEAQIAMLDFQAAQWLVDKKIPEQTGNEH
PLTVPTGVFATSDGYLNIAAIGQTMWKRLCEALDVPHLIDEPGMGSDPERVRSRDKVNAAIEAALRTRTTAEWTERLLKA
GVPCGPIHRVDQVFADAQVKHLGVAWPMQHAELGDVALVGQPMRLSRYPRDLPPQPAPEQGANTDDILRELGYSAGQVEA
LRAAYIV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=383, Percent_Identity=34.2036553524804, Blast_Score=242, Evalue=5e-64,
Organism=Homo sapiens, GI300863124, Length=409, Percent_Identity=32.0293398533007, Blast_Score=228, Evalue=9e-60,
Organism=Homo sapiens, GI300863126, Length=383, Percent_Identity=30.8093994778068, Blast_Score=192, Evalue=6e-49,
Organism=Homo sapiens, GI13376042, Length=409, Percent_Identity=28.8508557457213, Blast_Score=184, Evalue=2e-46,
Organism=Homo sapiens, GI42794625, Length=412, Percent_Identity=27.1844660194175, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI266456254, Length=412, Percent_Identity=27.1844660194175, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI266458397, Length=206, Percent_Identity=33.9805825242718, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI266458393, Length=206, Percent_Identity=33.9805825242718, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI266458395, Length=135, Percent_Identity=35.5555555555556, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI42822893, Length=131, Percent_Identity=35.8778625954198, Blast_Score=90, Evalue=3e-18,
Organism=Escherichia coli, GI87082093, Length=355, Percent_Identity=34.0845070422535, Blast_Score=217, Evalue=9e-58,
Organism=Escherichia coli, GI1788717, Length=421, Percent_Identity=27.3159144893112, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=25.5583126550869, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=328, Percent_Identity=23.1707317073171, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24648431, Length=399, Percent_Identity=33.0827067669173, Blast_Score=215, Evalue=4e-56,
Organism=Drosophila melanogaster, GI24585488, Length=311, Percent_Identity=29.5819935691318, Blast_Score=124, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44194; Mature: 44063

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIRQDARDAGARKGPLSRFTILDASRVRAGPTAVRLFADMGARVIKLEIPAGAPGGDD
CCCHHHHHHHCCCCCCCCCEEEEECHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCC
MIGGRDHNRADYENLHRNKESLTLNMKTPEGVKILHELVSRADVFIENYRPDVKHRLGIG
CCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC
PDALRAINPRLVYASISGFGQDGPYAGWPGFDSIAQGMGGLMSVTGKPGEGPMRVGIPLA
HHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCEEECCCHH
DLCAGHFCAMGILTALLEREASGEGQWVQTSLLEAQIAMLDFQAAQWLVDKKIPEQTGNE
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
HPLTVPTGVFATSDGYLNIAAIGQTMWKRLCEALDVPHLIDEPGMGSDPERVRSRDKVNA
CCCEECCCCEEECCCCEEHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHH
AIEAALRTRTTAEWTERLLKAGVPCGPIHRVDQVFADAQVKHLGVAWPMQHAELGDVALV
HHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
GQPMRLSRYPRDLPPQPAPEQGANTDDILRELGYSAGQVEALRAAYIV
CCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
ADIRQDARDAGARKGPLSRFTILDASRVRAGPTAVRLFADMGARVIKLEIPAGAPGGDD
CCHHHHHHHCCCCCCCCCEEEEECHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCC
MIGGRDHNRADYENLHRNKESLTLNMKTPEGVKILHELVSRADVFIENYRPDVKHRLGIG
CCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC
PDALRAINPRLVYASISGFGQDGPYAGWPGFDSIAQGMGGLMSVTGKPGEGPMRVGIPLA
HHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCEEECCCHH
DLCAGHFCAMGILTALLEREASGEGQWVQTSLLEAQIAMLDFQAAQWLVDKKIPEQTGNE
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
HPLTVPTGVFATSDGYLNIAAIGQTMWKRLCEALDVPHLIDEPGMGSDPERVRSRDKVNA
CCCEECCCCEEECCCCEEHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHH
AIEAALRTRTTAEWTERLLKAGVPCGPIHRVDQVFADAQVKHLGVAWPMQHAELGDVALV
HHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
GQPMRLSRYPRDLPPQPAPEQGANTDDILRELGYSAGQVEALRAAYIV
CCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]