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The map label for this gene is ccmF [H]

Identifier: 73538595

GI number: 73538595

Start: 1469700

End: 1471721

Strand: Direct

Name: ccmF [H]

Synonym: Reut_B4770

Alternate gene names: 73538595

Gene position: 1469700-1471721 (Clockwise)

Preceding gene: 73538594

Following gene: 73538596

Centisome position: 53.91

GC content: 69.04

Gene sequence:

>2022_bases
ATGATCCCGGAACTCGGACACTTTGCATTGATCGTGGCGCTGTTGGCCGCCATGATGCAGGCTCTGCTGCCGCTGGCCGG
CGCGGCGCGTGCCAATGCGGCGTGGATGTCTGTCGCCAGGCCTGCAGCGCGCGTGCAGTGCGCGTTGATAGTGCTGGCCT
ACGTGACACTGACGCTGGCCTTCGCGGGCAATGACTTCAGCGTGCGCTACGTCGCCGCAAATTCGAACAGCGACCTGCCG
CTCGCCTACCGGCTGGCCGCCGTCTGGGGGGGACATGAGGGCTCGATGCTGCTGTGGACGCTGATGCTGGCGCTGTGGTC
CCTCGCGGTCTCGGTGTTCAGCCGCCGCCTCCCGCTGCCCGTGGTCGCACGCGTGCTCGGCGTGATGGGCGCCATCAGCA
GTGGCTTGCTGCTGTTCCTGCTGTTCGCGTCCAATCCGTTCATCCGCCTGCTGCCGCCGGCAATGGCCGGTCGGGACCTT
AACCCGCTGCTGCAGGACCCCGGCATGGTGTTCCATCCGCCCATGCTTTACATGGGATACGTCGGCTTTGCCGTGACCTT
TTCCTTTGCCGTCGCGGCGCTGCTCGAAGGGCGCCTCGACGCCGCGTGGGCACGCTGGGCGCGGCCGTGGACCACGGTGG
CCTGGATGTTCCTGACGCTCGGCATCATGCTTGGCAGCGCATGGGCCTACTACGAGCTGGGCTGGGGCGGCTGGTGGTTC
TGGGATCCGGTCGAGAATGCATCGTTCATGCCGTGGCTCGCCGGCACGGCGCTGATGCATTCGCTCGCGGTGACGGAGAA
ACGCGGCGCGTTCCGCGCCTGGACCGCGCTGCTCGCGATCTTCACGTTCTCGCTGAGCTTGCTCGGCACCTTCCTGGTCC
GCTCGGGTGTGCTGACCTCGGTCCACGCGTTCGCCGTCGACCCGAAGCGCGGCATCTTCATCCTCGCGCTGCTGGGTCTT
GTGACCGGCCTGGCGCTCGCGCTGTTTGCATGGCGCGCGCCGCGACTCGCTCGGCGCACGGCGTTCAGCCTGCTGTCGCG
GGAAACTTTCCTGCTCGCCAACAATGTGCTGCTGGCCATCGCGGCGGCGACGGTGCTGCTGGGCACGCTCTACCCACTGC
TGGTCGATGTGCTCGGCCTCGGCAAGATCTCGGTGGGCCCGGCCTACTTCGAGCAGGTCTTCGTGCCGCTGATGGCGCCC
GCCGTGCTGCTGATGGGCGCCGCGCCGCTCGCGCGCTGGCGGCAGGGCGACTTGCCGGACATGGCGCGCCGGCTGCGCTG
GGCAGCCGCGGCCAGCATCGCCATTGGTGTCGGCCTGCTGCTGATCCTGCGCAATGCATCGGCACTGACCGGACTTGGCT
TGCTGCTCGCGGCCTGGTGCGCTGCGAGCGCGGCCGCCAGCGTGGCCGCAAGGCTGCGCAACCAGCGCGGACGCCGGCTG
GCCGCGCTGCGGCAACTGCCGGCCGGCTATTTCGGCATGCTGCTGGCTCACCTTGGCGTGGGCGTGTTCATCGCGGGCGT
GACGCTCGTGAGCAGCCAGGAAAGCCTGCGTGAGCTGCCGATGCAGCCCGGCGAGACCGTCGCCGTCGGCGATCATGACT
TCCGCTTCGGCGGCGTCAGTCCCGCCACGGGCCCGAACTACGAAGCGCTGCGCGGCATCATCAGCGTGTCGCGCCACGGC
AAGACGATCACCACGCTGATGCCCGAACGCCGCATCTACCGCAGCCAGGACATGCCGACCACCGAGGCCGCCATCGACAG
CGGCTTCACACGCGATCTCTACGTGGCGCTCGGCGAATCGCTCGGCGAAGGCCGCTGGGCCGTGCGCATCCACGTCAAGC
CGTTCGTCGACTGGATCTGGGGCGGGTGCGTGCTGATGGCGATCGGCGGGCTGCTCGCGGCCTGTGACCGGCGCTACCGG
CTGCACCGGCAGGCTGCCAGCGCTGTGGCACCGGAAGCGAATGTCCCCCAGCCTCAGGCGCCCGCACTGGCGCTCGCTGG
CAGCGAGGAGACGCAGGCATGA

Upstream 100 bases:

>100_bases
ACTACATGCCGCCCGAAGCCGCCGATGCGCTGAAGCAGGCGGAACAGGTCAACCGCCGCATGGCGAGCCAGTTAGCGGAA
GGCGAACGGGAGACGCAGCG

Downstream 100 bases:

>100_bases
CGCGCTTCCTGCTGCCGCTTGCGGTGTTCCTGGCGCTCGCTGTGGCGCTGGCCGCGGGCTTGCGCCACGATCCGCGCGAG
CTCCCGTCGCCACTGGTCGG

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MIPELGHFALIVALLAAMMQALLPLAGAARANAAWMSVARPAARVQCALIVLAYVTLTLAFAGNDFSVRYVAANSNSDLP
LAYRLAAVWGGHEGSMLLWTLMLALWSLAVSVFSRRLPLPVVARVLGVMGAISSGLLLFLLFASNPFIRLLPPAMAGRDL
NPLLQDPGMVFHPPMLYMGYVGFAVTFSFAVAALLEGRLDAAWARWARPWTTVAWMFLTLGIMLGSAWAYYELGWGGWWF
WDPVENASFMPWLAGTALMHSLAVTEKRGAFRAWTALLAIFTFSLSLLGTFLVRSGVLTSVHAFAVDPKRGIFILALLGL
VTGLALALFAWRAPRLARRTAFSLLSRETFLLANNVLLAIAAATVLLGTLYPLLVDVLGLGKISVGPAYFEQVFVPLMAP
AVLLMGAAPLARWRQGDLPDMARRLRWAAAASIAIGVGLLLILRNASALTGLGLLLAAWCAASAAASVAARLRNQRGRRL
AALRQLPAGYFGMLLAHLGVGVFIAGVTLVSSQESLRELPMQPGETVAVGDHDFRFGGVSPATGPNYEALRGIISVSRHG
KTITTLMPERRIYRSQDMPTTEAAIDSGFTRDLYVALGESLGEGRWAVRIHVKPFVDWIWGGCVLMAIGGLLAACDRRYR
LHRQAASAVAPEANVPQPQAPALALAGSEETQA

Sequences:

>Translated_673_residues
MIPELGHFALIVALLAAMMQALLPLAGAARANAAWMSVARPAARVQCALIVLAYVTLTLAFAGNDFSVRYVAANSNSDLP
LAYRLAAVWGGHEGSMLLWTLMLALWSLAVSVFSRRLPLPVVARVLGVMGAISSGLLLFLLFASNPFIRLLPPAMAGRDL
NPLLQDPGMVFHPPMLYMGYVGFAVTFSFAVAALLEGRLDAAWARWARPWTTVAWMFLTLGIMLGSAWAYYELGWGGWWF
WDPVENASFMPWLAGTALMHSLAVTEKRGAFRAWTALLAIFTFSLSLLGTFLVRSGVLTSVHAFAVDPKRGIFILALLGL
VTGLALALFAWRAPRLARRTAFSLLSRETFLLANNVLLAIAAATVLLGTLYPLLVDVLGLGKISVGPAYFEQVFVPLMAP
AVLLMGAAPLARWRQGDLPDMARRLRWAAAASIAIGVGLLLILRNASALTGLGLLLAAWCAASAAASVAARLRNQRGRRL
AALRQLPAGYFGMLLAHLGVGVFIAGVTLVSSQESLRELPMQPGETVAVGDHDFRFGGVSPATGPNYEALRGIISVSRHG
KTITTLMPERRIYRSQDMPTTEAAIDSGFTRDLYVALGESLGEGRWAVRIHVKPFVDWIWGGCVLMAIGGLLAACDRRYR
LHRQAASAVAPEANVPQPQAPALALAGSEETQA
>Mature_673_residues
MIPELGHFALIVALLAAMMQALLPLAGAARANAAWMSVARPAARVQCALIVLAYVTLTLAFAGNDFSVRYVAANSNSDLP
LAYRLAAVWGGHEGSMLLWTLMLALWSLAVSVFSRRLPLPVVARVLGVMGAISSGLLLFLLFASNPFIRLLPPAMAGRDL
NPLLQDPGMVFHPPMLYMGYVGFAVTFSFAVAALLEGRLDAAWARWARPWTTVAWMFLTLGIMLGSAWAYYELGWGGWWF
WDPVENASFMPWLAGTALMHSLAVTEKRGAFRAWTALLAIFTFSLSLLGTFLVRSGVLTSVHAFAVDPKRGIFILALLGL
VTGLALALFAWRAPRLARRTAFSLLSRETFLLANNVLLAIAAATVLLGTLYPLLVDVLGLGKISVGPAYFEQVFVPLMAP
AVLLMGAAPLARWRQGDLPDMARRLRWAAAASIAIGVGLLLILRNASALTGLGLLLAAWCAASAAASVAARLRNQRGRRL
AALRQLPAGYFGMLLAHLGVGVFIAGVTLVSSQESLRELPMQPGETVAVGDHDFRFGGVSPATGPNYEALRGIISVSRHG
KTITTLMPERRIYRSQDMPTTEAAIDSGFTRDLYVALGESLGEGRWAVRIHVKPFVDWIWGGCVLMAIGGLLAACDRRYR
LHRQAASAVAPEANVPQPQAPALALAGSEETQA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=656, Percent_Identity=53.9634146341463, Blast_Score=625, Evalue=1e-180,
Organism=Escherichia coli, GI1790511, Length=587, Percent_Identity=39.1822827938671, Blast_Score=333, Evalue=2e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72317; Mature: 72317

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGHFALIVALLAAMMQALLPLAGAARANAAWMSVARPAARVQCALIVLAYVTLTLA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHH
FAGNDFSVRYVAANSNSDLPLAYRLAAVWGGHEGSMLLWTLMLALWSLAVSVFSRRLPLP
EECCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
VVARVLGVMGAISSGLLLFLLFASNPFIRLLPPAMAGRDLNPLLQDPGMVFHPPMLYMGY
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCHHHHCCCCEECCHHHHHHH
VGFAVTFSFAVAALLEGRLDAAWARWARPWTTVAWMFLTLGIMLGSAWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHEEEECCCCEEE
WDPVENASFMPWLAGTALMHSLAVTEKRGAFRAWTALLAIFTFSLSLLGTFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFAVDPKRGIFILALLGLVTGLALALFAWRAPRLARRTAFSLLSRETFLLANNVLLAI
HHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAATVLLGTLYPLLVDVLGLGKISVGPAYFEQVFVPLMAPAVLLMGAAPLARWRQGDLPD
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHH
MARRLRWAAAASIAIGVGLLLILRNASALTGLGLLLAAWCAASAAASVAARLRNQRGRRL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AALRQLPAGYFGMLLAHLGVGVFIAGVTLVSSQESLRELPMQPGETVAVGDHDFRFGGVS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEECCCCCCCCCCC
PATGPNYEALRGIISVSRHGKTITTLMPERRIYRSQDMPTTEAAIDSGFTRDLYVALGES
CCCCCCHHHHHHHHHHHCCCCEEEHHCCHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHH
LGEGRWAVRIHVKPFVDWIWGGCVLMAIGGLLAACDRRYRLHRQAASAVAPEANVPQPQA
CCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PALALAGSEETQA
CEEEECCCCCCCC
>Mature Secondary Structure
MIPELGHFALIVALLAAMMQALLPLAGAARANAAWMSVARPAARVQCALIVLAYVTLTLA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHH
FAGNDFSVRYVAANSNSDLPLAYRLAAVWGGHEGSMLLWTLMLALWSLAVSVFSRRLPLP
EECCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
VVARVLGVMGAISSGLLLFLLFASNPFIRLLPPAMAGRDLNPLLQDPGMVFHPPMLYMGY
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCHHHHCCCCEECCHHHHHHH
VGFAVTFSFAVAALLEGRLDAAWARWARPWTTVAWMFLTLGIMLGSAWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHEEEECCCCEEE
WDPVENASFMPWLAGTALMHSLAVTEKRGAFRAWTALLAIFTFSLSLLGTFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFAVDPKRGIFILALLGLVTGLALALFAWRAPRLARRTAFSLLSRETFLLANNVLLAI
HHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAATVLLGTLYPLLVDVLGLGKISVGPAYFEQVFVPLMAPAVLLMGAAPLARWRQGDLPD
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHH
MARRLRWAAAASIAIGVGLLLILRNASALTGLGLLLAAWCAASAAASVAARLRNQRGRRL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AALRQLPAGYFGMLLAHLGVGVFIAGVTLVSSQESLRELPMQPGETVAVGDHDFRFGGVS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEECCCCCCCCCCC
PATGPNYEALRGIISVSRHGKTITTLMPERRIYRSQDMPTTEAAIDSGFTRDLYVALGES
CCCCCCHHHHHHHHHHHCCCCEEEHHCCHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHH
LGEGRWAVRIHVKPFVDWIWGGCVLMAIGGLLAACDRRYRLHRQAASAVAPEANVPQPQA
CCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PALALAGSEETQA
CEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]