| Definition | Ralstonia eutropha JMP134 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007348 |
| Length | 2,726,152 |
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The map label for this gene is lcfB [H]
Identifier: 73538524
GI number: 73538524
Start: 1396458
End: 1397954
Strand: Reverse
Name: lcfB [H]
Synonym: Reut_B4698
Alternate gene names: 73538524
Gene position: 1397954-1396458 (Counterclockwise)
Preceding gene: 73538527
Following gene: 73538523
Centisome position: 51.28
GC content: 64.53
Gene sequence:
>1497_bases ATGTACCCCATCGACTTCCTGTGGCGAGCAGCGCGCCGGCACCAAGACCGGGTCGCAATCATCAGCCCCACGGGCAACCT GACCTTTGGCGAACTGGCTGACGTCGTACTGAGGCGGGCGGCGGCGCTGACTGCGATCGATCCCAAGCCGCGCAGCCGGG TTTGCGTGGGGGCGGCGAATTCGGTCGATCATCTGGTGGCCATCCTTGCCATCCTGGCTGCCGGCAAGGTATGGGTACCG CTCAACCCGCGGAACGGCGATCCGGAACTGCGGCGCATCGTGGCGTTCGTAGAGCCTTCGCTGGTGCTGGCCGATCACGA GATGGCCGCACGGCTGGCGAACATTTCCGCAAGCCTGTATGCCCTCGATGTGCTCGAGTGCTATTCGGGTGATACCGCAA GCGTCATGATGGGGCCGTACTCGCGCCACGGCGTCGACCTTGGCGAGGCGCAGGCCATCAAGTTCACGGGCGGTACCACC GGGGTACCCAAGGGCGTGATCCAGCCCATGCGTGCATGGAACACCAATATCGCCACGCAGATCCACGAACTGGCACTGAC GCCGGACGACCGCTACCTGGTAGCTGCGCCGATCACGCATGGCACTTCGACCTATATGCTGCCTTTGCTCGGTGCGGGTG GCGCTCTGATTTTCCCGGAGTACGGCAAGGCGCCGGCCTTGCTTGATGCGGCGGAGCGGCACCGGGCGACCCTGTTCTTC GCGCCTCCCACGCTGATCCTGGCGTTAGTGGAAGAGCAGCGTTACGCGCCCCGTCCGCTGAAGGATTTGCGTTACCTGGT TTACGGCGGCGCGCCGATGCGCCCGGAGCAGATTCGCGACGCGCAGTCGGCCTTCGGCCAGGTTCTGTGCACCTCGTTCG GCCAGACCGAGGCGCCGCAGATCATTACCTTCCTGTCACCGTCCGAAATGACCGGAGAAAACCTCGCCTCGGTCGGCAGG CCGTCGATCCTGACCCGCGTGGCCATCGTCGACAAGCAAGGCCGGCCGCTGCCGGCCGGGGAGGAGGGCGAGATCGCCGT GCGAGGCGACCTGGTCATGAGCGGCTACCTGAAGGCAGAGGAAGAGACCCACAAGACCCTCGTCGATGGCTGGCTGCGCA CCGGGGACGCTGGCGTGCTGGATGAGCGCGGGTATCTCTTCCTGCGAGACCGCATTCGCGACGTGATCATTACCGGAGGA TTCAACGTTTATCCGAGCGATGTCGAGGTGGTGCTGTCCGCGCATCCGGCGGTGGCCGATTGTTCCGTAGTCGGTGTGCC GGATGCCAAGTGGGGTGAGGCCGTACACGCAGCGGTGCAGTTGCATCCGGGCATGAGCGTCGACACCGAGGATCTGATCG CGCTCGTCAAGCGCGAACTGGGTTCAGTCAAGACACCCAAGCATGTCCACCTGTTCGAGGCCCTCCCGCGCAGCGCGGTC GGCAAGGTACTGAAGCCTGCCGTCCGGGAAATCATTCTGAATCACCGGAGCCAATGA
Upstream 100 bases:
>100_bases AATATTCGAATATTCGAACAAAGTCCTATAGTGCTGTCATCGCGGCGGTAACTATTCCGTTCGCATCGCACGACTTATCG ATATCCGGAGATCACTGAGC
Downstream 100 bases:
>100_bases TGGCCAATACCAACGCGAAAGCCGCACCCGGCACGAAGCTGTGCCACTACACGGAGCACGCGGTCTACTACGGCGAAGAC GATCTGGTAGTAGATCTGCT
Product: AMP-dependent synthetase and ligase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase [H]
Number of amino acids: Translated: 498; Mature: 498
Protein sequence:
>498_residues MYPIDFLWRAARRHQDRVAIISPTGNLTFGELADVVLRRAAALTAIDPKPRSRVCVGAANSVDHLVAILAILAAGKVWVP LNPRNGDPELRRIVAFVEPSLVLADHEMAARLANISASLYALDVLECYSGDTASVMMGPYSRHGVDLGEAQAIKFTGGTT GVPKGVIQPMRAWNTNIATQIHELALTPDDRYLVAAPITHGTSTYMLPLLGAGGALIFPEYGKAPALLDAAERHRATLFF APPTLILALVEEQRYAPRPLKDLRYLVYGGAPMRPEQIRDAQSAFGQVLCTSFGQTEAPQIITFLSPSEMTGENLASVGR PSILTRVAIVDKQGRPLPAGEEGEIAVRGDLVMSGYLKAEEETHKTLVDGWLRTGDAGVLDERGYLFLRDRIRDVIITGG FNVYPSDVEVVLSAHPAVADCSVVGVPDAKWGEAVHAAVQLHPGMSVDTEDLIALVKRELGSVKTPKHVHLFEALPRSAV GKVLKPAVREIILNHRSQ
Sequences:
>Translated_498_residues MYPIDFLWRAARRHQDRVAIISPTGNLTFGELADVVLRRAAALTAIDPKPRSRVCVGAANSVDHLVAILAILAAGKVWVP LNPRNGDPELRRIVAFVEPSLVLADHEMAARLANISASLYALDVLECYSGDTASVMMGPYSRHGVDLGEAQAIKFTGGTT GVPKGVIQPMRAWNTNIATQIHELALTPDDRYLVAAPITHGTSTYMLPLLGAGGALIFPEYGKAPALLDAAERHRATLFF APPTLILALVEEQRYAPRPLKDLRYLVYGGAPMRPEQIRDAQSAFGQVLCTSFGQTEAPQIITFLSPSEMTGENLASVGR PSILTRVAIVDKQGRPLPAGEEGEIAVRGDLVMSGYLKAEEETHKTLVDGWLRTGDAGVLDERGYLFLRDRIRDVIITGG FNVYPSDVEVVLSAHPAVADCSVVGVPDAKWGEAVHAAVQLHPGMSVDTEDLIALVKRELGSVKTPKHVHLFEALPRSAV GKVLKPAVREIILNHRSQ >Mature_498_residues MYPIDFLWRAARRHQDRVAIISPTGNLTFGELADVVLRRAAALTAIDPKPRSRVCVGAANSVDHLVAILAILAAGKVWVP LNPRNGDPELRRIVAFVEPSLVLADHEMAARLANISASLYALDVLECYSGDTASVMMGPYSRHGVDLGEAQAIKFTGGTT GVPKGVIQPMRAWNTNIATQIHELALTPDDRYLVAAPITHGTSTYMLPLLGAGGALIFPEYGKAPALLDAAERHRATLFF APPTLILALVEEQRYAPRPLKDLRYLVYGGAPMRPEQIRDAQSAFGQVLCTSFGQTEAPQIITFLSPSEMTGENLASVGR PSILTRVAIVDKQGRPLPAGEEGEIAVRGDLVMSGYLKAEEETHKTLVDGWLRTGDAGVLDERGYLFLRDRIRDVIITGG FNVYPSDVEVVLSAHPAVADCSVVGVPDAKWGEAVHAAVQLHPGMSVDTEDLIALVKRELGSVKTPKHVHLFEALPRSAV GKVLKPAVREIILNHRSQ
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Partially Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI187761345, Length=522, Percent_Identity=29.1187739463602, Blast_Score=155, Evalue=6e-38, Organism=Homo sapiens, GI187761343, Length=522, Percent_Identity=29.1187739463602, Blast_Score=155, Evalue=6e-38, Organism=Homo sapiens, GI156151445, Length=516, Percent_Identity=27.1317829457364, Blast_Score=148, Evalue=9e-36, Organism=Homo sapiens, GI42544132, Length=362, Percent_Identity=29.5580110497238, Blast_Score=132, Evalue=5e-31, Organism=Homo sapiens, GI122937307, Length=368, Percent_Identity=30.4347826086957, Blast_Score=129, Evalue=5e-30, Organism=Homo sapiens, GI38505220, Length=355, Percent_Identity=29.8591549295775, Blast_Score=125, Evalue=1e-28, Organism=Homo sapiens, GI58082049, Length=376, Percent_Identity=28.4574468085106, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI157311624, Length=376, Percent_Identity=27.1276595744681, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI157311622, Length=376, Percent_Identity=27.1276595744681, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI115511026, Length=376, Percent_Identity=27.1276595744681, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI13375727, Length=376, Percent_Identity=25.7978723404255, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI253970489, Length=378, Percent_Identity=25.9259259259259, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI8923896, Length=378, Percent_Identity=25.9259259259259, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI28416953, Length=375, Percent_Identity=25.6, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI42794760, Length=321, Percent_Identity=26.791277258567, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI42794758, Length=321, Percent_Identity=26.791277258567, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI42794756, Length=321, Percent_Identity=26.791277258567, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI13325057, Length=573, Percent_Identity=24.2582897033159, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI195947378, Length=266, Percent_Identity=28.1954887218045, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI57165410, Length=166, Percent_Identity=33.7349397590361, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI57165412, Length=166, Percent_Identity=33.7349397590361, Blast_Score=70, Evalue=4e-12, Organism=Escherichia coli, GI1788107, Length=529, Percent_Identity=26.8431001890359, Blast_Score=166, Evalue=3e-42, Organism=Escherichia coli, GI221142682, Length=485, Percent_Identity=27.2164948453608, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI145693145, Length=532, Percent_Identity=27.2556390977444, Blast_Score=148, Evalue=7e-37, Organism=Escherichia coli, GI1790505, Length=359, Percent_Identity=27.2980501392758, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1786810, Length=517, Percent_Identity=24.3713733075435, Blast_Score=116, Evalue=4e-27, Organism=Escherichia coli, GI1789201, Length=357, Percent_Identity=25.4901960784314, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786801, Length=465, Percent_Identity=24.5161290322581, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1786529, Length=381, Percent_Identity=24.6719160104987, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1788595, Length=321, Percent_Identity=26.4797507788162, Blast_Score=66, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17558820, Length=494, Percent_Identity=28.1376518218623, Blast_Score=174, Evalue=1e-43, Organism=Caenorhabditis elegans, GI32563687, Length=474, Percent_Identity=26.5822784810127, Blast_Score=171, Evalue=9e-43, Organism=Caenorhabditis elegans, GI71994694, Length=353, Percent_Identity=30.3116147308782, Blast_Score=142, Evalue=3e-34, Organism=Caenorhabditis elegans, GI71994690, Length=353, Percent_Identity=30.3116147308782, Blast_Score=142, Evalue=4e-34, Organism=Caenorhabditis elegans, GI71994703, Length=353, Percent_Identity=30.3116147308782, Blast_Score=142, Evalue=4e-34, Organism=Caenorhabditis elegans, GI17560308, Length=356, Percent_Identity=29.2134831460674, Blast_Score=141, Evalue=7e-34, Organism=Caenorhabditis elegans, GI17559526, Length=352, Percent_Identity=28.4090909090909, Blast_Score=129, Evalue=4e-30, Organism=Caenorhabditis elegans, GI17557194, Length=488, Percent_Identity=24.7950819672131, Blast_Score=122, Evalue=3e-28, Organism=Caenorhabditis elegans, GI17538037, Length=526, Percent_Identity=23.574144486692, Blast_Score=122, Evalue=5e-28, Organism=Caenorhabditis elegans, GI71985884, Length=360, Percent_Identity=28.6111111111111, Blast_Score=101, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17531443, Length=363, Percent_Identity=24.7933884297521, Blast_Score=101, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17560140, Length=350, Percent_Identity=25.1428571428571, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI71996755, Length=509, Percent_Identity=22.3968565815324, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71983001, Length=394, Percent_Identity=24.8730964467005, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71982997, Length=394, Percent_Identity=24.8730964467005, Blast_Score=75, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17564090, Length=166, Percent_Identity=32.5301204819277, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17510401, Length=167, Percent_Identity=30.5389221556886, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6319699, Length=535, Percent_Identity=25.2336448598131, Blast_Score=153, Evalue=5e-38, Organism=Saccharomyces cerevisiae, GI6323182, Length=384, Percent_Identity=27.6041666666667, Blast_Score=106, Evalue=8e-24, Organism=Saccharomyces cerevisiae, GI6319264, Length=385, Percent_Identity=24.9350649350649, Blast_Score=93, Evalue=8e-20, Organism=Saccharomyces cerevisiae, GI6324893, Length=167, Percent_Identity=31.1377245508982, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI24581924, Length=344, Percent_Identity=32.8488372093023, Blast_Score=174, Evalue=2e-43, Organism=Drosophila melanogaster, GI21355181, Length=525, Percent_Identity=23.6190476190476, Blast_Score=138, Evalue=9e-33, Organism=Drosophila melanogaster, GI18859661, Length=521, Percent_Identity=24.1842610364683, Blast_Score=125, Evalue=9e-29, Organism=Drosophila melanogaster, GI24648260, Length=516, Percent_Identity=25.5813953488372, Blast_Score=118, Evalue=9e-27, Organism=Drosophila melanogaster, GI24653035, Length=494, Percent_Identity=22.8744939271255, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI21356947, Length=507, Percent_Identity=23.4714003944773, Blast_Score=113, Evalue=3e-25, Organism=Drosophila melanogaster, GI24648257, Length=524, Percent_Identity=26.3358778625954, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI161076582, Length=495, Percent_Identity=23.2323232323232, Blast_Score=110, Evalue=3e-24, Organism=Drosophila melanogaster, GI24648253, Length=523, Percent_Identity=23.9005736137667, Blast_Score=109, Evalue=4e-24, Organism=Drosophila melanogaster, GI21356441, Length=527, Percent_Identity=23.9089184060721, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI24648255, Length=523, Percent_Identity=24.0917782026769, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI19922652, Length=516, Percent_Identity=24.6124031007752, Blast_Score=105, Evalue=8e-23, Organism=Drosophila melanogaster, GI21358303, Length=234, Percent_Identity=27.7777777777778, Blast_Score=102, Evalue=4e-22, Organism=Drosophila melanogaster, GI281365686, Length=375, Percent_Identity=24, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI20130357, Length=341, Percent_Identity=26.3929618768328, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24667955, Length=364, Percent_Identity=25.8241758241758, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI62472339, Length=364, Percent_Identity=25.8241758241758, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI24667959, Length=364, Percent_Identity=25.8241758241758, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI24656500, Length=446, Percent_Identity=24.6636771300448, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI19921316, Length=517, Percent_Identity=22.6305609284333, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI21355225, Length=532, Percent_Identity=22.7443609022556, Blast_Score=79, Evalue=7e-15, Organism=Drosophila melanogaster, GI24648676, Length=532, Percent_Identity=25, Blast_Score=74, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020459 - InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 53841; Mature: 53841
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYPIDFLWRAARRHQDRVAIISPTGNLTFGELADVVLRRAAALTAIDPKPRSRVCVGAAN CCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCEEEECCC SVDHLVAILAILAAGKVWVPLNPRNGDPELRRIVAFVEPSLVLADHEMAARLANISASLY CHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCHHHH ALDVLECYSGDTASVMMGPYSRHGVDLGEAQAIKFTGGTTGVPKGVIQPMRAWNTNIATQ HHHHHHHHCCCCCEEEECCCHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHH IHELALTPDDRYLVAAPITHGTSTYMLPLLGAGGALIFPEYGKAPALLDAAERHRATLFF HHHHEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHCCEEEEE APPTLILALVEEQRYAPRPLKDLRYLVYGGAPMRPEQIRDAQSAFGQVLCTSFGQTEAPQ CCHHHHHHHHHHHCCCCCCHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC IITFLSPSEMTGENLASVGRPSILTRVAIVDKQGRPLPAGEEGEIAVRGDLVMSGYLKAE EEEEECCCCCCCHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCCEEEECCEEEECCCCCH EETHKTLVDGWLRTGDAGVLDERGYLFLRDRIRDVIITGGFNVYPSDVEVVLSAHPAVAD HHHHHHHHHHHHHCCCCCEECCCCEEEEECCCCEEEEECCCEECCCCEEEEEECCCCCCC CSVVGVPDAKWGEAVHAAVQLHPGMSVDTEDLIALVKRELGSVKTPKHVHLFEALPRSAV CEEEECCCCCHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHH GKVLKPAVREIILNHRSQ HHHHHHHHHHHHHHCCCC >Mature Secondary Structure MYPIDFLWRAARRHQDRVAIISPTGNLTFGELADVVLRRAAALTAIDPKPRSRVCVGAAN CCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCEEEECCC SVDHLVAILAILAAGKVWVPLNPRNGDPELRRIVAFVEPSLVLADHEMAARLANISASLY CHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCHHHH ALDVLECYSGDTASVMMGPYSRHGVDLGEAQAIKFTGGTTGVPKGVIQPMRAWNTNIATQ HHHHHHHHCCCCCEEEECCCHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHH IHELALTPDDRYLVAAPITHGTSTYMLPLLGAGGALIFPEYGKAPALLDAAERHRATLFF HHHHEECCCCCEEEEEECCCCCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHCCEEEEE APPTLILALVEEQRYAPRPLKDLRYLVYGGAPMRPEQIRDAQSAFGQVLCTSFGQTEAPQ CCHHHHHHHHHHHCCCCCCHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC IITFLSPSEMTGENLASVGRPSILTRVAIVDKQGRPLPAGEEGEIAVRGDLVMSGYLKAE EEEEECCCCCCCHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCCEEEECCEEEECCCCCH EETHKTLVDGWLRTGDAGVLDERGYLFLRDRIRDVIITGGFNVYPSDVEVVLSAHPAVAD HHHHHHHHHHHHHCCCCCEECCCCEEEEECCCCEEEEECCCEECCCCEEEEEECCCCCCC CSVVGVPDAKWGEAVHAAVQLHPGMSVDTEDLIALVKRELGSVKTPKHVHLFEALPRSAV CEEEECCCCCHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHH GKVLKPAVREIILNHRSQ HHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]