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The map label for this gene is ydhC [H]

Identifier: 73537950

GI number: 73537950

Start: 758795

End: 759571

Strand: Reverse

Name: ydhC [H]

Synonym: Reut_B4119

Alternate gene names: 73537950

Gene position: 759571-758795 (Counterclockwise)

Preceding gene: 73537951

Following gene: 73537949

Centisome position: 27.86

GC content: 58.82

Gene sequence:

>777_bases
ATGGCAGCGATCCTTTCCATCGGCGGGCGGACGGGGAAGCGCCATTTCCTGGGGCGATACGAGGGGCGACCGACTCACCT
GCCAAGTCAAGCACCTATGAATACTCGCATTGAAATCGACAAGCGCAGCCTGGATCGACAGGCAGCCGACTGGATCCGGG
ACGCCATCTTTTCCGGGGATCTGGCACCGGGCTCACGACTCACGGAGATCTCGCTTGCGACCCAGATCGGCCTTTCCCGC
TCCACGGTTCGTGCTGGCATGCAGCGATTGGCCAGTGAGGGTCTTCTGATCCAGCACGCCTATACCGGATGGGAAGTGGT
ATCGCTCTCGGCAGAAGACGCCTGGGAACTATATACGTTGCGCAGCAACCTGGAAGGGATGGCCGCCAGCCTCGCAGCCG
CAAATATCGACGATGCTGGCCGCACGCAGCTGCGCAAGGCTTTGGCGGAATTGAAATCCGCTATCGCAAACAAGGACCGC
AGGGGCATAGCCGAAGCCGACCTGGCTTTTCACAAGACCGTCGTCGCGCTATCGCGCCATCGTCGCCTCATCGCCCAGTA
CGGACAAATCAGCGACCCGGTCATGCTCTACATCCTCATGACCACGAAACTAATGGAATATTCCGATGCCATCTATGCCG
AGCACGAGCATATGGCCACTGCAATTCTCGATGGCAATGTTACGGAAGCCGAGAAACTTGCCCATGACTACGCGCGCATG
CATGGCGAACACCTGGTGAAGGTTCTGCGAACGCAAAGCGAGTTCCAGGACGCCTGA

Upstream 100 bases:

>100_bases
CGCCTGCCCAAGTGACGGCAACACGGCTTGCGGCTGCGGCTTCGGGGTTGCCCCTCTTCAATTGGCAACAATTAACAATC
ATGACTCAGGTGGCGGTATC

Downstream 100 bases:

>100_bases
GTGGGCGATTTGCAGACGGCCCTCGCTACGTTCCCACGCCGAAACAAAGAACAATGAACTGATGCTGGAGGCAGCGTCCG
AATGACGCGGAATCGATGAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MAAILSIGGRTGKRHFLGRYEGRPTHLPSQAPMNTRIEIDKRSLDRQAADWIRDAIFSGDLAPGSRLTEISLATQIGLSR
STVRAGMQRLASEGLLIQHAYTGWEVVSLSAEDAWELYTLRSNLEGMAASLAAANIDDAGRTQLRKALAELKSAIANKDR
RGIAEADLAFHKTVVALSRHRRLIAQYGQISDPVMLYILMTTKLMEYSDAIYAEHEHMATAILDGNVTEAEKLAHDYARM
HGEHLVKVLRTQSEFQDA

Sequences:

>Translated_258_residues
MAAILSIGGRTGKRHFLGRYEGRPTHLPSQAPMNTRIEIDKRSLDRQAADWIRDAIFSGDLAPGSRLTEISLATQIGLSR
STVRAGMQRLASEGLLIQHAYTGWEVVSLSAEDAWELYTLRSNLEGMAASLAAANIDDAGRTQLRKALAELKSAIANKDR
RGIAEADLAFHKTVVALSRHRRLIAQYGQISDPVMLYILMTTKLMEYSDAIYAEHEHMATAILDGNVTEAEKLAHDYARM
HGEHLVKVLRTQSEFQDA
>Mature_257_residues
AAILSIGGRTGKRHFLGRYEGRPTHLPSQAPMNTRIEIDKRSLDRQAADWIRDAIFSGDLAPGSRLTEISLATQIGLSRS
TVRAGMQRLASEGLLIQHAYTGWEVVSLSAEDAWELYTLRSNLEGMAASLAAANIDDAGRTQLRKALAELKSAIANKDRR
GIAEADLAFHKTVVALSRHRRLIAQYGQISDPVMLYILMTTKLMEYSDAIYAEHEHMATAILDGNVTEAEKLAHDYARMH
GEHLVKVLRTQSEFQDA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28582; Mature: 28451

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAILSIGGRTGKRHFLGRYEGRPTHLPSQAPMNTRIEIDKRSLDRQAADWIRDAIFSGD
CCEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCC
LAPGSRLTEISLATQIGLSRSTVRAGMQRLASEGLLIQHAYTGWEVVSLSAEDAWELYTL
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCHHHHHHH
RSNLEGMAASLAAANIDDAGRTQLRKALAELKSAIANKDRRGIAEADLAFHKTVVALSRH
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHH
RRLIAQYGQISDPVMLYILMTTKLMEYSDAIYAEHEHMATAILDGNVTEAEKLAHDYARM
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHH
HGEHLVKVLRTQSEFQDA
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AAILSIGGRTGKRHFLGRYEGRPTHLPSQAPMNTRIEIDKRSLDRQAADWIRDAIFSGD
CEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCC
LAPGSRLTEISLATQIGLSRSTVRAGMQRLASEGLLIQHAYTGWEVVSLSAEDAWELYTL
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCHHHHHHH
RSNLEGMAASLAAANIDDAGRTQLRKALAELKSAIANKDRRGIAEADLAFHKTVVALSRH
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHH
RRLIAQYGQISDPVMLYILMTTKLMEYSDAIYAEHEHMATAILDGNVTEAEKLAHDYARM
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHH
HGEHLVKVLRTQSEFQDA
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]