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The map label for this gene is rpoE [H]

Identifier: 73537629

GI number: 73537629

Start: 396734

End: 397300

Strand: Reverse

Name: rpoE [H]

Synonym: Reut_B3794

Alternate gene names: 73537629

Gene position: 397300-396734 (Counterclockwise)

Preceding gene: 73537630

Following gene: 73537628

Centisome position: 14.57

GC content: 66.84

Gene sequence:

>567_bases
GTGGACGCTTATCCGGGAGGGCTGGCGGTGAAGGACCTGTTGCAGCAAGTCGAGCCGATGATCCCCGCGCTGCGGCGCTA
TGCGCGCGCACTGCTGCGAGACGCAGCCGCCGCCGACGATCTCGTGCAGGACTGCCTCGAGAAGGTCATCACTTACTGGG
ACAGCCGCCGCCACCACGGCGACACGCGCAGCTGGGTGTTTGCGATCCTGCACAACCTGGCGATGACCACGCTGCGCCGC
CACGCCGGCACGTCGGGCCTGCATGTCGACATCGACGATGTGGCGGAATCCCTGAGCACCCGCGCCACCCAGGAGGATGC
CCTGCACTACCAGGACCTCATGAGCGCACTGGACGCGCTGCCGGCCGAGCAGCGCAGCGTGCTGCTGCTGGTGTCGGTCG
AAGACATGTCGTACGCGGACACCGCGCGCGTGCTCGACATCCCGATCGGCACAGTGATGTCGCGCCTGTCGCGTGCACGG
GATAGGCTGTTGAGGATCATGGAAAGCGGCGAGACGGCGACGACAGCAGGATCGCCCCGGAAGGCGGCATTGCGGAGGGT
CAAATGA

Upstream 100 bases:

>100_bases
GCCGGCACGGAAACGCGGCGCTATCTTGTGATCGCGCCCACGGACAACGGCAAACCCACTGCACCCGTGCAGGTGCAGGC
CATGTAGGCGGGCGCGCGTT

Downstream 100 bases:

>100_bases
ACGAGAACCGGCCCGTGCAGGAAGAAGACCTGCAGGCCTATGTCGACAACGCGCTCGACGAAGCGCGCCGGCAAGAGATC
GAGGCCTATCTGCGCGACCA

Product: sigma-70 region 2:sigma-70 region 4

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MDAYPGGLAVKDLLQQVEPMIPALRRYARALLRDAAAADDLVQDCLEKVITYWDSRRHHGDTRSWVFAILHNLAMTTLRR
HAGTSGLHVDIDDVAESLSTRATQEDALHYQDLMSALDALPAEQRSVLLLVSVEDMSYADTARVLDIPIGTVMSRLSRAR
DRLLRIMESGETATTAGSPRKAALRRVK

Sequences:

>Translated_188_residues
MDAYPGGLAVKDLLQQVEPMIPALRRYARALLRDAAAADDLVQDCLEKVITYWDSRRHHGDTRSWVFAILHNLAMTTLRR
HAGTSGLHVDIDDVAESLSTRATQEDALHYQDLMSALDALPAEQRSVLLLVSVEDMSYADTARVLDIPIGTVMSRLSRAR
DRLLRIMESGETATTAGSPRKAALRRVK
>Mature_188_residues
MDAYPGGLAVKDLLQQVEPMIPALRRYARALLRDAAAADDLVQDCLEKVITYWDSRRHHGDTRSWVFAILHNLAMTTLRR
HAGTSGLHVDIDDVAESLSTRATQEDALHYQDLMSALDALPAEQRSVLLLVSVEDMSYADTARVLDIPIGTVMSRLSRAR
DRLLRIMESGETATTAGSPRKAALRRVK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20893; Mature: 20893

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAYPGGLAVKDLLQQVEPMIPALRRYARALLRDAAAADDLVQDCLEKVITYWDSRRHHG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DTRSWVFAILHNLAMTTLRRHAGTSGLHVDIDDVAESLSTRATQEDALHYQDLMSALDAL
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PAEQRSVLLLVSVEDMSYADTARVLDIPIGTVMSRLSRARDRLLRIMESGETATTAGSPR
CCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
KAALRRVK
HHHHHCCC
>Mature Secondary Structure
MDAYPGGLAVKDLLQQVEPMIPALRRYARALLRDAAAADDLVQDCLEKVITYWDSRRHHG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DTRSWVFAILHNLAMTTLRRHAGTSGLHVDIDDVAESLSTRATQEDALHYQDLMSALDAL
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PAEQRSVLLLVSVEDMSYADTARVLDIPIGTVMSRLSRARDRLLRIMESGETATTAGSPR
CCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
KAALRRVK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]