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The map label for this gene is abgR [H]

Identifier: 73537535

GI number: 73537535

Start: 285232

End: 286230

Strand: Reverse

Name: abgR [H]

Synonym: Reut_B3700

Alternate gene names: 73537535

Gene position: 286230-285232 (Counterclockwise)

Preceding gene: 73537541

Following gene: 73537534

Centisome position: 10.5

GC content: 66.97

Gene sequence:

>999_bases
ATGCACAGCATGCGACTCAGCCAGATCCAGGATTTCATCGCGGTGGCGGAAGGCGGCAGCATCCGCGCCGCGGCTCGGAC
GCGCGACGTGTCGGCGCCCGCGCTGACGAAGAGCATCCGCCAGCTTGAGGACGAACTGCATGTGCCGCTGCTCACGCGCA
CGACGCGCGGGGTCGTGCTGTCGCACTATGGCGAAGCCTTCCTGCGCCGCGCGCGGCTGATTGCCACCGAAGCCCGCCGG
GCCACGGAAGAAATGACGCAGATGCTGGGCGCGCGTACCGGCACCGTTCGCATTGGCGTCACCGGCGGTCCGGCGCACCT
GTTGCTGCCCGCTGCCTTGAACCGGTTCCGCCGGCAGCATCCGGAAGTGCAGGTCTACATCGACAGCGGCCGCTCTGCGG
TGCACCTGCAGGACCTGCGTGCGGGCCTCATCGACGTCGCGGTGAGCCCGATTCCCGATGAAGGCATTGACCACGACTTC
ATCTGCGAGCCGCTCTACAACAACGACTCGGTCGTGGTTGCACACCAGGACCATCCGCTGCGCCATGCGCGCACGCTGCG
TGAGCTGGTGGGTTCGGAATGGATCCTGACTACCTGCCGCATGCACGGGCCTGGCGCGGCCATCATGGATGCCTTCCGCG
CGCAGGATCTGCCCCTGCCCCGCGTGGCCGTGCGGTGCGACACCTTCAACCTCATCCAGGCGCTGCTGCAGAACCGCAGG
CTGCTGTGTATGGTTGCGCGCCAACTCATGCAAGACCGGGTGGGTGCCTCGACGGGGCTGGCGGTCCTTCCGATCGAAGA
CCCGTTGCCGAGCCACACCGTCTGCCTGATCTACCGCGCCGATTCCCCGATGCCTCCGGTGGTCGCCAGCTTTGCCGCAC
AACTGCGGCGCGAGGCGCACTACCTGATCAACATGCCCGACAGCCCGTTGAAGCGACCCGGCGCGCCACCGGAACCGCGC
GATGACAAGCCTGTGGAAACCGCAGACATTGCCGTATAG

Upstream 100 bases:

>100_bases
AACGTGGAATCCATTTCCAGATGTTGGAAATATAGGTCATCGCCTTGACCCGTTTCGCGGGTAGGGCATAAGGTACTTTG
GACGCCGATTCTCAACCCGG

Downstream 100 bases:

>100_bases
GCCACCCATCTCAGGCGACGACACGTTGGCATCCGTCTCCGCAAGCGGCACAGACCGATTGCGCCCGTTCGACTTCGCGA
GATACATCGCCTTGTCCGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MHSMRLSQIQDFIAVAEGGSIRAAARTRDVSAPALTKSIRQLEDELHVPLLTRTTRGVVLSHYGEAFLRRARLIATEARR
ATEEMTQMLGARTGTVRIGVTGGPAHLLLPAALNRFRRQHPEVQVYIDSGRSAVHLQDLRAGLIDVAVSPIPDEGIDHDF
ICEPLYNNDSVVVAHQDHPLRHARTLRELVGSEWILTTCRMHGPGAAIMDAFRAQDLPLPRVAVRCDTFNLIQALLQNRR
LLCMVARQLMQDRVGASTGLAVLPIEDPLPSHTVCLIYRADSPMPPVVASFAAQLRREAHYLINMPDSPLKRPGAPPEPR
DDKPVETADIAV

Sequences:

>Translated_332_residues
MHSMRLSQIQDFIAVAEGGSIRAAARTRDVSAPALTKSIRQLEDELHVPLLTRTTRGVVLSHYGEAFLRRARLIATEARR
ATEEMTQMLGARTGTVRIGVTGGPAHLLLPAALNRFRRQHPEVQVYIDSGRSAVHLQDLRAGLIDVAVSPIPDEGIDHDF
ICEPLYNNDSVVVAHQDHPLRHARTLRELVGSEWILTTCRMHGPGAAIMDAFRAQDLPLPRVAVRCDTFNLIQALLQNRR
LLCMVARQLMQDRVGASTGLAVLPIEDPLPSHTVCLIYRADSPMPPVVASFAAQLRREAHYLINMPDSPLKRPGAPPEPR
DDKPVETADIAV
>Mature_332_residues
MHSMRLSQIQDFIAVAEGGSIRAAARTRDVSAPALTKSIRQLEDELHVPLLTRTTRGVVLSHYGEAFLRRARLIATEARR
ATEEMTQMLGARTGTVRIGVTGGPAHLLLPAALNRFRRQHPEVQVYIDSGRSAVHLQDLRAGLIDVAVSPIPDEGIDHDF
ICEPLYNNDSVVVAHQDHPLRHARTLRELVGSEWILTTCRMHGPGAAIMDAFRAQDLPLPRVAVRCDTFNLIQALLQNRR
LLCMVARQLMQDRVGASTGLAVLPIEDPLPSHTVCLIYRADSPMPPVVASFAAQLRREAHYLINMPDSPLKRPGAPPEPR
DDKPVETADIAV

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=299, Percent_Identity=33.4448160535117, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1789506, Length=287, Percent_Identity=24.390243902439, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790399, Length=298, Percent_Identity=25.8389261744966, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI145693105, Length=306, Percent_Identity=24.8366013071895, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788887, Length=293, Percent_Identity=28.6689419795222, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788481, Length=262, Percent_Identity=26.7175572519084, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081904, Length=177, Percent_Identity=27.683615819209, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786401, Length=174, Percent_Identity=29.3103448275862, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787128, Length=159, Percent_Identity=31.4465408805031, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1789639, Length=144, Percent_Identity=30.5555555555556, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789440, Length=199, Percent_Identity=28.643216080402, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787806, Length=183, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790208, Length=150, Percent_Identity=28, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788297, Length=182, Percent_Identity=29.1208791208791, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=175, Percent_Identity=25.7142857142857, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787879, Length=183, Percent_Identity=29.5081967213115, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI2367136, Length=151, Percent_Identity=29.8013245033113, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI157672245, Length=177, Percent_Identity=29.9435028248588, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36644; Mature: 36644

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSMRLSQIQDFIAVAEGGSIRAAARTRDVSAPALTKSIRQLEDELHVPLLTRTTRGVVL
CCCCHHHHHHHHHHHCCCCCEEEHHHCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCHHH
SHYGEAFLRRARLIATEARRATEEMTQMLGARTGTVRIGVTGGPAHLLLPAALNRFRRQH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
PEVQVYIDSGRSAVHLQDLRAGLIDVAVSPIPDEGIDHDFICEPLYNNDSVVVAHQDHPL
CCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCH
RHARTLRELVGSEWILTTCRMHGPGAAIMDAFRAQDLPLPRVAVRCDTFNLIQALLQNRR
HHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCH
LLCMVARQLMQDRVGASTGLAVLPIEDPLPSHTVCLIYRADSPMPPVVASFAAQLRREAH
HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC
YLINMPDSPLKRPGAPPEPRDDKPVETADIAV
EEEECCCCCCCCCCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MHSMRLSQIQDFIAVAEGGSIRAAARTRDVSAPALTKSIRQLEDELHVPLLTRTTRGVVL
CCCCHHHHHHHHHHHCCCCCEEEHHHCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCHHH
SHYGEAFLRRARLIATEARRATEEMTQMLGARTGTVRIGVTGGPAHLLLPAALNRFRRQH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
PEVQVYIDSGRSAVHLQDLRAGLIDVAVSPIPDEGIDHDFICEPLYNNDSVVVAHQDHPL
CCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCH
RHARTLRELVGSEWILTTCRMHGPGAAIMDAFRAQDLPLPRVAVRCDTFNLIQALLQNRR
HHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCH
LLCMVARQLMQDRVGASTGLAVLPIEDPLPSHTVCLIYRADSPMPPVVASFAAQLRREAH
HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC
YLINMPDSPLKRPGAPPEPRDDKPVETADIAV
EEEECCCCCCCCCCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]